Wall clock time and date at job start Tue Mar 31 2020 01:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47128 * 2 1 4 4 C 1.53000 * 109.47007 * 119.99779 * 2 1 3 5 5 C 1.53003 * 115.54872 * 29.87285 * 4 2 1 6 6 C 1.53074 * 117.51455 * 244.14776 * 4 2 1 7 7 C 1.53000 * 117.49598 * 175.53688 * 4 2 1 8 8 H 1.09006 * 117.49785 * 215.00301 * 7 4 2 9 9 C 1.50695 * 117.50287 * 0.02562 * 7 4 2 10 10 O 1.21282 * 119.99761 * 341.01680 * 9 7 4 11 11 N 1.34774 * 120.00026 * 161.02010 * 9 7 4 12 12 C 1.46918 * 120.63269 * 359.97438 * 11 9 7 13 13 C 1.53196 * 108.77504 * 126.41490 * 12 11 9 14 14 C 1.53043 * 109.31347 * 54.63906 * 13 12 11 15 15 C 1.53048 * 109.53179 * 298.63429 * 14 13 12 16 16 H 1.08994 * 109.49624 * 301.37909 * 15 14 13 17 17 C 1.50710 * 109.49392 * 181.31490 * 15 14 13 18 18 H 1.07993 * 119.99749 * 240.00127 * 17 15 14 19 19 C 1.37875 * 119.99847 * 59.99796 * 17 15 14 20 20 N 1.31520 * 120.00174 * 0.02562 * 19 17 15 21 21 Si 1.86802 * 119.99888 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.46832 * 180.02562 * 21 19 17 23 23 H 1.48494 * 109.47014 * 300.00441 * 21 19 17 24 24 H 1.48498 * 109.46694 * 60.00502 * 21 19 17 25 25 C 1.46928 * 120.62825 * 180.02562 * 11 9 7 26 26 H 1.09001 * 109.47156 * 60.00137 * 1 2 3 27 27 H 1.08994 * 109.47241 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46995 * 299.99940 * 1 2 3 29 29 H 1.09000 * 109.46995 * 240.00060 * 2 1 3 30 30 H 1.08999 * 109.47156 * 174.32895 * 3 2 1 31 31 H 1.09004 * 109.47379 * 294.32485 * 3 2 1 32 32 H 1.09000 * 109.47546 * 54.32591 * 3 2 1 33 33 H 1.08997 * 109.46799 * 205.66657 * 5 4 2 34 34 H 1.09000 * 109.46804 * 325.66840 * 5 4 2 35 35 H 1.09004 * 109.47026 * 85.66856 * 5 4 2 36 36 H 1.08996 * 117.49241 * 145.04024 * 6 4 2 37 37 H 1.08994 * 117.51511 * 0.02562 * 6 4 2 38 38 H 1.08994 * 109.59033 * 6.62865 * 12 11 9 39 39 H 1.08997 * 109.70575 * 246.26993 * 12 11 9 40 40 H 1.08995 * 109.49621 * 294.68616 * 13 12 11 41 41 H 1.09002 * 109.52205 * 174.60075 * 13 12 11 42 42 H 1.08991 * 109.46372 * 178.61337 * 14 13 12 43 43 H 1.09000 * 109.45002 * 58.64258 * 14 13 12 44 44 H 0.96998 * 119.99733 * 179.97438 * 20 19 17 45 45 H 1.09005 * 109.58521 * 113.79912 * 25 11 9 46 46 H 1.08997 * 109.58679 * 353.37376 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.1314 -1.8272 1.7899 6 6 2.8338 0.1022 2.2666 7 6 3.5511 -0.9202 1.3827 8 1 3.8980 -1.8390 1.8557 9 6 4.4234 -0.3903 0.2739 10 8 3.9426 -0.1490 -0.8131 11 7 5.7376 -0.1846 0.4902 12 6 6.3344 -0.4717 1.8017 13 6 7.5307 -1.4081 1.6047 14 6 8.4994 -0.7865 0.5960 15 6 7.7940 -0.6138 -0.7513 16 1 7.4432 -1.5832 -1.1051 17 6 8.7581 -0.0316 -1.7527 18 1 8.5412 0.9160 -2.2232 19 6 9.9170 -0.7086 -2.0681 20 7 10.1809 -1.8628 -1.4955 21 14 11.1116 0.0127 -3.3099 22 1 12.2698 -0.9025 -3.4719 23 1 10.4264 0.1795 -4.6168 24 1 11.5880 1.3343 -2.8285 25 6 6.6006 0.3321 -0.5808 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 3.1253 1.4441 0.1015 31 1 1.7620 1.9262 -0.9364 32 1 1.5961 1.9848 0.8348 33 1 1.3118 -1.9563 2.8570 34 1 0.0890 -1.5525 1.6281 35 1 1.3461 -2.7606 1.2695 36 1 2.7085 -0.1442 3.3209 37 1 2.9924 1.1577 2.0462 38 1 5.5953 -0.9530 2.4420 39 1 6.6694 0.4567 2.2642 40 1 7.1818 -2.3699 1.2289 41 1 8.0407 -1.5528 2.5571 42 1 9.3634 -1.4392 0.4725 43 1 8.8284 0.1865 0.9609 44 1 10.9961 -2.3393 -1.7177 45 1 6.9577 1.3269 -0.3144 46 1 6.0371 0.3812 -1.5125 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597904019.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:32 Heat of formation + Delta-G solvation = -23.027279 kcal Electronic energy + Delta-G solvation = -23207.200401 eV Core-core repulsion = 20097.105137 eV Total energy + Delta-G solvation = -3110.095263 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.47693 -38.16318 -36.34674 -33.65122 -32.93557 -31.25135 -30.26098 -29.29879 -26.41751 -25.26287 -24.89049 -23.17416 -22.50723 -21.64032 -19.71958 -18.48926 -17.97612 -16.92088 -16.24991 -15.48772 -15.25450 -14.62315 -14.35950 -14.22331 -13.80598 -13.45193 -13.29043 -13.15496 -12.88008 -12.75830 -12.45081 -12.32628 -12.04081 -11.95962 -11.76898 -11.48948 -10.96777 -10.96591 -10.84147 -10.75590 -10.71444 -10.55327 -10.32661 -10.12115 -9.94125 -9.77118 -9.58646 -9.41634 -8.98022 -8.78438 -8.37525 -7.83485 -6.01477 -4.08735 2.97904 3.31566 3.35927 3.38518 3.52002 3.82827 4.42766 4.62219 4.72084 4.83565 4.94654 5.20378 5.27714 5.29658 5.40483 5.49421 5.58013 5.65378 5.67851 5.72844 5.73462 5.78046 5.83133 5.95513 5.99543 6.03171 6.10632 6.14864 6.15899 6.34552 6.41529 6.42665 6.50222 6.57629 6.67064 6.71561 6.83386 7.01708 7.19270 7.34824 7.69281 7.93106 8.06656 8.08425 8.38292 8.72963 8.94927 9.56108 11.03937 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.029079 B = 0.004259 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.674990 B = 6572.328643 C = 7100.760476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.056 4.056 3 C -0.142 4.142 4 C -0.088 4.088 5 C -0.122 4.122 6 C -0.159 4.159 7 C -0.180 4.180 8 H 0.121 0.879 9 C 0.537 3.463 10 O -0.540 6.540 11 N -0.599 5.599 12 C 0.112 3.888 13 C -0.136 4.136 14 C -0.112 4.112 15 C 0.041 3.959 16 H 0.029 0.971 17 C -0.515 4.515 18 H 0.056 0.944 19 C 0.064 3.936 20 N -0.889 5.889 21 Si 0.893 3.107 22 H -0.287 1.287 23 H -0.277 1.277 24 H -0.277 1.277 25 C 0.117 3.883 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.050 0.950 29 H 0.095 0.905 30 H 0.066 0.934 31 H 0.048 0.952 32 H 0.040 0.960 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.097 0.903 37 H 0.103 0.897 38 H 0.071 0.929 39 H 0.060 0.940 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.095 0.905 43 H 0.035 0.965 44 H 0.261 0.739 45 H 0.053 0.947 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.715 1.698 10.028 17.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.074 4.074 3 C -0.199 4.199 4 C -0.089 4.089 5 C -0.178 4.178 6 C -0.196 4.196 7 C -0.201 4.201 8 H 0.139 0.861 9 C 0.325 3.675 10 O -0.418 6.418 11 N -0.331 5.331 12 C -0.011 4.011 13 C -0.174 4.174 14 C -0.150 4.150 15 C 0.022 3.978 16 H 0.047 0.953 17 C -0.553 4.553 18 H 0.074 0.926 19 C -0.138 4.138 20 N -0.528 5.528 21 Si 0.721 3.279 22 H -0.213 1.213 23 H -0.202 1.202 24 H -0.203 1.203 25 C -0.003 4.003 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.114 0.886 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.115 0.885 37 H 0.121 0.879 38 H 0.089 0.911 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.113 0.887 43 H 0.054 0.946 44 H 0.071 0.929 45 H 0.071 0.929 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -14.809 1.690 9.449 17.648 hybrid contribution 0.999 0.223 -0.456 1.121 sum -13.810 1.913 8.993 16.590 Atomic orbital electron populations 1.21963 0.96085 1.01214 1.01127 1.20622 0.93877 0.96091 0.96851 1.22006 1.02213 0.95384 1.00246 1.21595 0.90361 0.99157 0.97772 1.21506 0.99369 0.96932 1.00041 1.23335 1.02652 0.97507 0.96088 1.22312 0.94707 1.02132 1.00940 0.86136 1.19535 0.81967 0.77839 0.88132 1.90637 1.72974 1.52427 1.25798 1.48274 1.07574 1.63639 1.13607 1.21688 0.96035 0.99195 0.84190 1.22012 0.96511 0.98735 1.00119 1.21626 0.99422 0.99616 0.94338 1.18969 0.90699 0.94826 0.93350 0.95330 1.21046 1.04599 1.06305 1.23372 0.92568 1.24932 0.97889 0.94793 0.96150 1.69866 1.25859 1.14332 1.42745 0.86643 0.80456 0.78903 0.81925 1.21309 1.20227 1.20260 1.21988 0.92005 0.97326 0.89024 0.93022 0.92603 0.93130 0.88649 0.91518 0.93270 0.94087 0.92632 0.91082 0.92119 0.88453 0.87917 0.91068 0.92151 0.92468 0.92563 0.88686 0.94642 0.92937 0.92865 0.90326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 8.01 37.16 0.30 -1.25 16 2 C -0.06 -0.75 2.37 -90.62 -0.21 -0.96 16 3 C -0.14 -1.96 7.05 37.15 0.26 -1.70 16 4 C -0.09 -1.07 2.51 -154.47 -0.39 -1.46 16 5 C -0.12 -1.18 9.38 37.16 0.35 -0.83 16 6 C -0.16 -1.79 8.99 -26.69 -0.24 -2.03 16 7 C -0.18 -2.46 4.24 -91.77 -0.39 -2.85 16 8 H 0.12 1.51 7.52 -51.93 -0.39 1.12 16 9 C 0.54 9.58 6.09 -10.99 -0.07 9.51 16 10 O -0.54 -11.02 11.36 5.56 0.06 -10.96 16 11 N -0.60 -11.09 2.97 -172.75 -0.51 -11.60 16 12 C 0.11 1.76 6.35 -3.71 -0.02 1.74 16 13 C -0.14 -2.42 6.08 -26.61 -0.16 -2.59 16 14 C -0.11 -2.52 4.96 -26.68 -0.13 -2.65 16 15 C 0.04 1.00 2.25 -91.62 -0.21 0.80 16 16 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 17 C -0.51 -13.99 8.56 -34.44 -0.29 -14.28 16 18 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 19 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 20 N -0.89 -25.03 11.31 55.43 0.63 -24.41 16 21 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 C 0.12 2.55 5.66 -3.69 -0.02 2.53 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.53 6.57 -51.93 -0.34 0.19 16 28 H 0.05 0.48 8.13 -51.93 -0.42 0.06 16 29 H 0.10 1.55 6.54 -51.93 -0.34 1.21 16 30 H 0.07 1.08 4.37 -51.93 -0.23 0.85 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.04 0.49 7.58 -51.93 -0.39 0.10 16 33 H 0.05 0.47 7.90 -51.93 -0.41 0.06 16 34 H 0.07 0.61 5.61 -51.93 -0.29 0.32 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.10 0.89 8.05 -51.93 -0.42 0.47 16 37 H 0.10 1.23 5.84 -51.93 -0.30 0.93 16 38 H 0.07 0.92 5.96 -51.93 -0.31 0.61 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.09 2.42 6.04 -51.93 -0.31 2.11 16 43 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 45 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 46 H 0.08 1.83 7.00 -51.93 -0.36 1.46 16 LS Contribution 340.75 15.07 5.14 5.14 Total: -1.00 -28.87 340.75 -8.90 -37.77 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -7.87 Total: 2.28 kcal Atomic # 6 Polarization: -13.04 SS G_CDS: -1.32 Total: -14.37 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: 0.11 Total: -36.01 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.06 Total: -10.96 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -28.87 -8.90 -37.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597904019.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.746 kcal (2) G-P(sol) polarization free energy of solvation -28.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds