Wall clock time and date at job start Tue Mar 31 2020 01:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47128 * 2 1 4 4 C 1.53000 * 109.47007 * 119.99779 * 2 1 3 5 5 C 1.53003 * 115.54872 * 29.87285 * 4 2 1 6 6 C 1.53074 * 117.51455 * 244.14776 * 4 2 1 7 7 C 1.53000 * 117.49598 * 175.53688 * 4 2 1 8 8 H 1.09006 * 117.49785 * 215.00301 * 7 4 2 9 9 C 1.50695 * 117.50287 * 0.02562 * 7 4 2 10 10 O 1.21282 * 119.99761 * 341.01680 * 9 7 4 11 11 N 1.34774 * 120.00026 * 161.02010 * 9 7 4 12 12 C 1.46918 * 120.63269 * 359.97438 * 11 9 7 13 13 C 1.53196 * 108.77504 * 126.41490 * 12 11 9 14 14 C 1.53043 * 109.31347 * 54.63906 * 13 12 11 15 15 C 1.53048 * 109.53179 * 298.63429 * 14 13 12 16 16 H 1.08994 * 109.49624 * 301.37909 * 15 14 13 17 17 C 1.50710 * 109.49392 * 181.31490 * 15 14 13 18 18 H 1.07993 * 119.99749 * 240.00127 * 17 15 14 19 19 C 1.37875 * 119.99847 * 59.99796 * 17 15 14 20 20 N 1.31520 * 120.00174 * 0.02562 * 19 17 15 21 21 Si 1.86802 * 119.99888 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.46832 * 180.02562 * 21 19 17 23 23 H 1.48494 * 109.47014 * 300.00441 * 21 19 17 24 24 H 1.48498 * 109.46694 * 60.00502 * 21 19 17 25 25 C 1.46928 * 120.62825 * 180.02562 * 11 9 7 26 26 H 1.09001 * 109.47156 * 60.00137 * 1 2 3 27 27 H 1.08994 * 109.47241 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46995 * 299.99940 * 1 2 3 29 29 H 1.09000 * 109.46995 * 240.00060 * 2 1 3 30 30 H 1.08999 * 109.47156 * 174.32895 * 3 2 1 31 31 H 1.09004 * 109.47379 * 294.32485 * 3 2 1 32 32 H 1.09000 * 109.47546 * 54.32591 * 3 2 1 33 33 H 1.08997 * 109.46799 * 205.66657 * 5 4 2 34 34 H 1.09000 * 109.46804 * 325.66840 * 5 4 2 35 35 H 1.09004 * 109.47026 * 85.66856 * 5 4 2 36 36 H 1.08996 * 117.49241 * 145.04024 * 6 4 2 37 37 H 1.08994 * 117.51511 * 0.02562 * 6 4 2 38 38 H 1.08994 * 109.59033 * 6.62865 * 12 11 9 39 39 H 1.08997 * 109.70575 * 246.26993 * 12 11 9 40 40 H 1.08995 * 109.49621 * 294.68616 * 13 12 11 41 41 H 1.09002 * 109.52205 * 174.60075 * 13 12 11 42 42 H 1.08991 * 109.46372 * 178.61337 * 14 13 12 43 43 H 1.09000 * 109.45002 * 58.64258 * 14 13 12 44 44 H 0.96998 * 119.99733 * 179.97438 * 20 19 17 45 45 H 1.09005 * 109.58521 * 113.79912 * 25 11 9 46 46 H 1.08997 * 109.58679 * 353.37376 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.1314 -1.8272 1.7899 6 6 2.8338 0.1022 2.2666 7 6 3.5511 -0.9202 1.3827 8 1 3.8980 -1.8390 1.8557 9 6 4.4234 -0.3903 0.2739 10 8 3.9426 -0.1490 -0.8131 11 7 5.7376 -0.1846 0.4902 12 6 6.3344 -0.4717 1.8017 13 6 7.5307 -1.4081 1.6047 14 6 8.4994 -0.7865 0.5960 15 6 7.7940 -0.6138 -0.7513 16 1 7.4432 -1.5832 -1.1051 17 6 8.7581 -0.0316 -1.7527 18 1 8.5412 0.9160 -2.2232 19 6 9.9170 -0.7086 -2.0681 20 7 10.1809 -1.8628 -1.4955 21 14 11.1116 0.0127 -3.3099 22 1 12.2698 -0.9025 -3.4719 23 1 10.4264 0.1795 -4.6168 24 1 11.5880 1.3343 -2.8285 25 6 6.6006 0.3321 -0.5808 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 3.1253 1.4441 0.1015 31 1 1.7620 1.9262 -0.9364 32 1 1.5961 1.9848 0.8348 33 1 1.3118 -1.9563 2.8570 34 1 0.0890 -1.5525 1.6281 35 1 1.3461 -2.7606 1.2695 36 1 2.7085 -0.1442 3.3209 37 1 2.9924 1.1577 2.0462 38 1 5.5953 -0.9530 2.4420 39 1 6.6694 0.4567 2.2642 40 1 7.1818 -2.3699 1.2289 41 1 8.0407 -1.5528 2.5571 42 1 9.3634 -1.4392 0.4725 43 1 8.8284 0.1865 0.9609 44 1 10.9961 -2.3393 -1.7177 45 1 6.9577 1.3269 -0.3144 46 1 6.0371 0.3812 -1.5125 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597904019.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:31 Heat of formation + Delta-G solvation = -37.960043 kcal Electronic energy + Delta-G solvation = -23207.847934 eV Core-core repulsion = 20097.105137 eV Total energy + Delta-G solvation = -3110.742797 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -41.71479 -39.50586 -37.82540 -35.40497 -34.12170 -32.90709 -31.99592 -30.20604 -27.58600 -26.97247 -26.33216 -24.34832 -23.65886 -23.25368 -21.29795 -19.88614 -19.07023 -18.54664 -17.95418 -16.83202 -16.78577 -16.31762 -15.56142 -15.30243 -15.15150 -14.99418 -14.70602 -14.58435 -14.10886 -13.98144 -13.85618 -13.59315 -13.40708 -13.19289 -12.86851 -12.74526 -12.62663 -12.59003 -12.39397 -11.99810 -11.92711 -11.84754 -11.78225 -11.60941 -11.50275 -11.23315 -11.06296 -10.85268 -10.65094 -10.43051 -10.18769 -9.41372 -8.11826 -6.27508 1.39961 1.41631 1.49058 1.66555 2.14185 2.42734 2.80319 3.14340 3.55045 3.73297 3.87864 4.00389 4.11825 4.19142 4.26482 4.34847 4.40085 4.50542 4.55357 4.62337 4.69302 4.79150 4.81724 4.85963 4.88613 4.88915 4.97956 4.99789 5.04997 5.09478 5.11577 5.12226 5.25965 5.27278 5.29740 5.46517 5.48438 5.52633 5.59478 5.63999 5.68952 5.91857 6.12463 6.33294 6.64315 6.81955 7.33166 7.40761 8.91578 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.029079 B = 0.004259 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.674990 B = 6572.328643 C = 7100.760476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.059 4.059 3 C -0.136 4.136 4 C -0.090 4.090 5 C -0.118 4.118 6 C -0.134 4.134 7 C -0.195 4.195 8 H 0.139 0.861 9 C 0.530 3.470 10 O -0.575 6.575 11 N -0.606 5.606 12 C 0.115 3.885 13 C -0.128 4.128 14 C -0.105 4.105 15 C 0.042 3.958 16 H -0.016 1.016 17 C -0.540 4.540 18 H 0.051 0.949 19 C 0.018 3.982 20 N -0.913 5.913 21 Si 0.955 3.045 22 H -0.281 1.281 23 H -0.276 1.276 24 H -0.267 1.267 25 C 0.132 3.868 26 H 0.048 0.952 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.055 0.945 30 H 0.039 0.961 31 H 0.036 0.964 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.054 0.946 36 H 0.133 0.867 37 H 0.095 0.905 38 H 0.110 0.890 39 H 0.078 0.922 40 H 0.042 0.958 41 H 0.089 0.911 42 H 0.062 0.938 43 H 0.036 0.964 44 H 0.262 0.738 45 H 0.057 0.943 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.095 2.035 12.774 20.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.078 4.078 3 C -0.193 4.193 4 C -0.091 4.091 5 C -0.175 4.175 6 C -0.171 4.171 7 C -0.216 4.216 8 H 0.156 0.844 9 C 0.320 3.680 10 O -0.456 6.456 11 N -0.338 5.338 12 C -0.007 4.007 13 C -0.166 4.166 14 C -0.143 4.143 15 C 0.023 3.977 16 H 0.002 0.998 17 C -0.579 4.579 18 H 0.069 0.931 19 C -0.181 4.181 20 N -0.552 5.552 21 Si 0.780 3.220 22 H -0.207 1.207 23 H -0.202 1.202 24 H -0.192 1.192 25 C 0.010 3.990 26 H 0.067 0.933 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.101 0.899 35 H 0.073 0.927 36 H 0.151 0.849 37 H 0.113 0.887 38 H 0.129 0.871 39 H 0.096 0.904 40 H 0.061 0.939 41 H 0.107 0.893 42 H 0.080 0.920 43 H 0.055 0.945 44 H 0.071 0.929 45 H 0.075 0.925 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -16.199 2.026 12.220 20.392 hybrid contribution 1.414 0.119 -1.384 1.982 sum -14.786 2.145 10.836 18.456 Atomic orbital electron populations 1.21905 0.93756 1.02206 1.01846 1.20554 0.95824 0.95233 0.96177 1.21941 1.00543 0.96307 1.00545 1.21737 0.89638 1.00107 0.97613 1.21528 0.99340 0.95503 1.01095 1.23453 0.99806 0.96441 0.97384 1.22286 0.94972 1.03646 1.00691 0.84359 1.20381 0.81858 0.76869 0.88909 1.90630 1.73568 1.53676 1.27739 1.48348 1.07799 1.63834 1.13804 1.21880 0.95899 0.99768 0.83175 1.21919 0.96589 0.98105 0.99958 1.21417 0.99207 0.99250 0.94447 1.18867 0.91612 0.92966 0.94250 0.99833 1.21418 1.05587 1.06437 1.24428 0.93070 1.25690 0.99456 0.95143 0.97859 1.70006 1.26246 1.15261 1.43700 0.85661 0.78308 0.78557 0.79435 1.20655 1.20188 1.19232 1.21495 0.91134 0.96859 0.89529 0.93327 0.91483 0.91382 0.92633 0.94164 0.94434 0.91834 0.90489 0.89867 0.92721 0.84914 0.88705 0.87148 0.90425 0.93906 0.89289 0.91988 0.94514 0.92910 0.92453 0.93067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 8.01 71.98 0.58 -2.10 16 2 C -0.06 -1.54 2.37 -10.79 -0.03 -1.56 16 3 C -0.14 -3.74 7.05 71.98 0.51 -3.23 16 4 C -0.09 -1.96 2.51 -52.16 -0.13 -2.09 16 5 C -0.12 -1.84 9.38 71.98 0.68 -1.17 16 6 C -0.13 -2.50 8.99 30.62 0.28 -2.23 16 7 C -0.20 -4.88 4.24 -11.54 -0.05 -4.93 16 8 H 0.14 2.98 7.52 -2.38 -0.02 2.96 16 9 C 0.53 18.95 6.09 87.66 0.53 19.49 16 10 O -0.58 -24.66 11.36 -3.04 -0.03 -24.70 16 11 N -0.61 -22.46 2.97 -818.85 -2.43 -24.89 16 12 C 0.11 3.33 6.35 86.37 0.55 3.88 16 13 C -0.13 -4.41 6.08 30.67 0.19 -4.22 16 14 C -0.10 -4.82 4.96 30.62 0.15 -4.66 16 15 C 0.04 2.19 2.25 -11.44 -0.03 2.16 16 16 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 17 C -0.54 -30.59 8.56 25.60 0.22 -30.37 16 18 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 19 C 0.02 0.99 5.30 84.65 0.45 1.44 16 20 N -0.91 -53.00 11.31 21.45 0.24 -52.76 16 21 Si 0.96 44.19 29.54 68.60 2.03 46.22 16 22 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 23 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 24 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 25 C 0.13 6.00 5.66 86.38 0.49 6.49 16 26 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.07 1.13 6.57 -2.39 -0.02 1.11 16 28 H 0.07 1.08 8.13 -2.39 -0.02 1.06 16 29 H 0.06 1.88 6.54 -2.39 -0.02 1.87 16 30 H 0.04 1.31 4.37 -2.39 -0.01 1.30 16 31 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.06 1.41 7.58 -2.39 -0.02 1.39 16 33 H 0.08 0.90 7.90 -2.39 -0.02 0.88 16 34 H 0.08 1.11 5.61 -2.39 -0.01 1.09 16 35 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.13 1.61 8.05 -2.39 -0.02 1.59 16 37 H 0.09 1.98 5.84 -2.39 -0.01 1.96 16 38 H 0.11 2.40 5.96 -2.39 -0.01 2.38 16 39 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 42 H 0.06 3.26 6.04 -2.39 -0.01 3.25 16 43 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 45 H 0.06 2.51 8.14 -2.38 -0.02 2.49 16 46 H 0.05 2.55 7.00 -2.39 -0.02 2.54 16 Total: -1.00 -67.52 340.75 5.13 -62.39 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: 0.94 Total: 16.85 kcal Atomic # 6 Polarization: -27.49 SS G_CDS: 4.38 Total: -23.11 kcal Atomic # 7 Polarization: -75.46 SS G_CDS: -2.19 Total: -77.65 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: -0.03 Total: -24.70 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -67.52 5.13 -62.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597904019.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.428 kcal (2) G-P(sol) polarization free energy of solvation -67.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds