Wall clock time and date at job start Tue Mar 31 2020 01:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47577 * 2 1 4 4 C 1.52998 * 109.47112 * 120.00327 * 2 1 3 5 5 C 1.53006 * 115.55101 * 34.41659 * 4 2 1 6 6 C 1.53002 * 117.49839 * 248.74638 * 4 2 1 7 7 C 1.52999 * 59.99973 * 252.48295 * 6 4 2 8 8 H 1.09003 * 117.49831 * 107.48560 * 7 6 4 9 9 C 1.50699 * 117.50321 * 252.50762 * 7 6 4 10 10 O 1.21281 * 119.99637 * 68.62025 * 9 7 6 11 11 N 1.34774 * 120.00127 * 248.62694 * 9 7 6 12 12 C 1.46923 * 120.62965 * 359.71449 * 11 9 7 13 13 C 1.52760 * 109.00961 * 233.58561 * 12 11 9 14 14 C 1.53041 * 109.38323 * 305.59075 * 13 12 11 15 15 C 1.53046 * 109.53854 * 61.23870 * 14 13 12 16 16 H 1.08996 * 109.49675 * 58.58524 * 15 14 13 17 17 C 1.50700 * 109.49505 * 178.68278 * 15 14 13 18 18 H 1.08006 * 119.99846 * 119.84175 * 17 15 14 19 19 C 1.37874 * 120.00379 * 299.83740 * 17 15 14 20 20 N 1.31515 * 119.99953 * 359.97438 * 19 17 15 21 21 Si 1.86796 * 120.00274 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47647 * 89.99706 * 21 19 17 23 23 H 1.48501 * 109.47126 * 210.00154 * 21 19 17 24 24 H 1.48507 * 109.46956 * 329.99463 * 21 19 17 25 25 C 1.46927 * 120.63005 * 180.02562 * 11 9 7 26 26 H 1.09005 * 109.47197 * 300.00203 * 1 2 3 27 27 H 1.09000 * 109.47235 * 59.99731 * 1 2 3 28 28 H 1.09003 * 109.47310 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47197 * 239.99797 * 2 1 3 30 30 H 1.08994 * 109.47263 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47058 * 300.00378 * 3 2 1 32 32 H 1.09005 * 109.46501 * 59.99640 * 3 2 1 33 33 H 1.09001 * 109.47002 * 325.72008 * 5 4 2 34 34 H 1.08993 * 109.46955 * 85.72445 * 5 4 2 35 35 H 1.09000 * 109.47050 * 205.72274 * 5 4 2 36 36 H 1.08995 * 117.50025 * 359.97438 * 6 4 2 37 37 H 1.08998 * 117.49666 * 144.97432 * 6 4 2 38 38 H 1.08997 * 109.58805 * 353.41904 * 12 11 9 39 39 H 1.08998 * 109.58397 * 113.85227 * 12 11 9 40 40 H 1.08995 * 109.57104 * 185.55590 * 13 12 11 41 41 H 1.09003 * 109.38535 * 65.51598 * 13 12 11 42 42 H 1.08996 * 109.46492 * 301.21783 * 14 13 12 43 43 H 1.09000 * 109.46117 * 181.25774 * 14 13 12 44 44 H 0.97001 * 119.99960 * 179.97438 * 20 19 17 45 45 H 1.09007 * 109.58250 * 246.15337 * 25 11 9 46 46 H 1.09000 * 109.58600 * 6.43264 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.1863 -1.8979 1.7266 6 6 2.7393 0.1230 2.3165 7 6 3.5549 -0.8260 1.4361 8 1 4.1886 -0.3811 0.6689 9 6 4.0920 -2.0801 2.0763 10 8 3.3305 -2.9587 2.4215 11 7 5.4185 -2.2253 2.2652 12 6 6.3539 -1.1725 1.8467 13 6 7.4224 -1.7863 0.9439 14 6 8.0824 -2.9633 1.6658 15 6 7.0305 -4.0330 1.9684 16 1 6.5701 -4.3641 1.0376 17 6 7.6873 -5.2055 2.6503 18 1 7.3717 -5.5007 3.6402 19 6 8.6910 -5.9014 2.0107 20 7 9.0750 -5.5423 0.8052 21 14 9.5046 -7.3551 2.8557 22 1 8.7674 -8.5996 2.5192 23 1 10.9110 -7.4727 2.3936 24 1 9.4824 -7.1489 4.3262 25 6 5.9572 -3.4425 2.8874 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9562 0.8900 33 1 0.1349 -1.6868 1.5313 34 1 1.4809 -2.8010 1.1921 35 1 1.3349 -2.0441 2.7965 36 1 2.8364 1.1922 2.1285 37 1 2.5908 -0.1595 3.3587 38 1 5.8138 -0.4006 1.2985 39 1 6.8288 -0.7354 2.7251 40 1 8.1764 -1.0354 0.7079 41 1 6.9588 -2.1384 0.0224 42 1 8.5250 -2.6150 2.5990 43 1 8.8604 -3.3883 1.0316 44 1 9.7814 -6.0317 0.3553 45 1 6.3990 -3.1945 3.8526 46 1 5.1549 -4.1668 3.0280 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597904020.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:36 Heat of formation + Delta-G solvation = -27.748588 kcal Electronic energy + Delta-G solvation = -22921.801954 eV Core-core repulsion = 19811.501959 eV Total energy + Delta-G solvation = -3110.299995 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.31771 -38.32183 -36.50469 -33.52176 -33.07152 -31.32531 -30.24232 -29.21624 -26.52874 -25.34846 -24.88582 -23.15334 -22.77742 -21.62757 -19.65595 -18.47413 -17.90937 -17.11167 -16.29730 -15.53780 -15.16752 -14.69887 -14.52164 -14.30275 -13.66233 -13.48927 -13.36590 -13.02773 -12.79520 -12.69786 -12.48252 -12.43182 -12.02158 -11.98734 -11.66626 -11.62948 -11.45863 -11.10057 -10.97304 -10.82318 -10.73737 -10.70866 -10.30867 -10.00328 -9.94807 -9.76963 -9.55746 -9.41855 -9.03209 -8.78356 -8.37895 -7.84232 -6.01545 -4.08613 2.92195 3.30257 3.36721 3.39650 3.54147 3.89835 4.42733 4.56384 4.66654 4.81659 4.88965 4.99815 5.13461 5.24680 5.28944 5.46207 5.48876 5.49572 5.59291 5.67861 5.74968 5.75582 5.79949 5.90443 5.94573 6.01109 6.10298 6.13426 6.14464 6.24650 6.32379 6.34574 6.42744 6.50709 6.66429 6.71239 6.83380 7.01813 7.19139 7.34941 7.69557 7.93314 8.07175 8.08695 8.38502 8.74311 8.95302 9.56244 11.04017 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.031559 B = 0.003926 C = 0.003733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.016818 B = 7130.108310 C = 7498.794517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.061 4.061 3 C -0.151 4.151 4 C -0.086 4.086 5 C -0.107 4.107 6 C -0.153 4.153 7 C -0.183 4.183 8 H 0.120 0.880 9 C 0.537 3.463 10 O -0.547 6.547 11 N -0.600 5.600 12 C 0.111 3.889 13 C -0.136 4.136 14 C -0.112 4.112 15 C 0.040 3.960 16 H 0.029 0.971 17 C -0.514 4.514 18 H 0.057 0.943 19 C 0.063 3.937 20 N -0.889 5.889 21 Si 0.893 3.107 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 C 0.118 3.882 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.052 0.948 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.105 0.895 37 H 0.095 0.905 38 H 0.071 0.929 39 H 0.061 0.939 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.035 0.965 43 H 0.095 0.905 44 H 0.260 0.740 45 H 0.053 0.947 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.418 14.841 -1.388 18.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.080 4.080 3 C -0.208 4.208 4 C -0.087 4.087 5 C -0.163 4.163 6 C -0.190 4.190 7 C -0.204 4.204 8 H 0.137 0.863 9 C 0.325 3.675 10 O -0.426 6.426 11 N -0.331 5.331 12 C -0.012 4.012 13 C -0.175 4.175 14 C -0.150 4.150 15 C 0.021 3.979 16 H 0.047 0.953 17 C -0.552 4.552 18 H 0.075 0.925 19 C -0.138 4.138 20 N -0.528 5.528 21 Si 0.721 3.279 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.199 1.199 25 C -0.003 4.003 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.092 0.908 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.123 0.877 37 H 0.113 0.887 38 H 0.089 0.911 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.054 0.946 43 H 0.113 0.887 44 H 0.070 0.930 45 H 0.071 0.929 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.669 14.314 -1.326 18.515 hybrid contribution 0.887 -0.719 0.304 1.182 sum -10.782 13.595 -1.022 17.381 Atomic orbital electron populations 1.21887 0.94826 1.02115 1.01402 1.20613 0.95863 0.95295 0.96184 1.21982 1.01097 0.95985 1.01709 1.21566 0.91329 0.98963 0.96839 1.21444 0.96959 0.95883 1.02039 1.23265 1.02253 0.96969 0.96548 1.22404 0.95460 0.98357 1.04191 0.86263 1.19561 0.82109 0.87129 0.78687 1.90650 1.56462 1.43128 1.52320 1.48246 1.05187 1.20040 1.59648 1.21648 0.91538 0.89621 0.98433 1.21941 0.97170 0.99480 0.98862 1.21620 1.00861 0.93415 0.99077 1.18957 0.90985 0.93029 0.94929 0.95326 1.21083 1.18831 1.12894 1.02441 0.92505 1.24936 0.96749 0.97293 0.94836 1.69877 1.29768 1.40298 1.12847 0.86580 0.78560 0.82949 0.79829 1.20662 1.21255 1.19880 1.21967 0.97824 0.84443 0.96085 0.92569 0.92920 0.91926 0.90764 0.92548 0.92685 0.92214 0.92946 0.91412 0.91845 0.87690 0.88662 0.91059 0.92118 0.92505 0.92468 0.94616 0.88699 0.92996 0.92861 0.90360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 8.20 37.16 0.30 -0.96 16 2 C -0.06 -0.61 3.15 -90.62 -0.29 -0.89 16 3 C -0.15 -1.25 7.79 37.16 0.29 -0.96 16 4 C -0.09 -1.06 2.46 -154.50 -0.38 -1.44 16 5 C -0.11 -1.47 7.74 37.16 0.29 -1.18 16 6 C -0.15 -1.76 8.92 -26.73 -0.24 -2.00 16 7 C -0.18 -2.53 4.50 -91.77 -0.41 -2.94 16 8 H 0.12 1.49 6.01 -51.93 -0.31 1.18 16 9 C 0.54 9.87 7.46 -10.99 -0.08 9.79 16 10 O -0.55 -11.60 12.52 5.56 0.07 -11.53 16 11 N -0.60 -11.35 2.98 -173.06 -0.52 -11.87 16 12 C 0.11 1.76 6.32 -3.93 -0.02 1.74 16 13 C -0.14 -2.45 6.06 -26.83 -0.16 -2.62 16 14 C -0.11 -2.53 4.96 -26.69 -0.13 -2.66 16 15 C 0.04 1.00 2.25 -91.67 -0.21 0.79 16 16 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 17 C -0.51 -14.05 8.56 -34.44 -0.29 -14.35 16 18 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 19 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 20 N -0.89 -25.11 11.32 55.43 0.63 -24.48 16 21 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 24 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 25 C 0.12 2.60 5.66 -3.74 -0.02 2.58 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.57 6.44 -51.93 -0.33 0.23 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.47 7.07 -51.93 -0.37 0.10 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.46 6.97 -51.93 -0.36 0.10 16 33 H 0.05 0.60 5.58 -51.93 -0.29 0.31 16 34 H 0.07 1.09 7.26 -51.93 -0.38 0.71 16 35 H 0.06 0.97 7.02 -51.93 -0.36 0.61 16 36 H 0.10 0.97 5.85 -51.93 -0.30 0.66 16 37 H 0.09 1.18 8.05 -51.93 -0.42 0.76 16 38 H 0.07 0.93 5.51 -51.93 -0.29 0.64 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.09 2.43 6.05 -51.93 -0.31 2.12 16 44 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 45 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 46 H 0.08 1.85 7.00 -51.93 -0.36 1.49 16 LS Contribution 343.30 15.07 5.17 5.17 Total: -1.00 -29.46 343.30 -8.98 -38.44 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -7.86 Total: 1.51 kcal Atomic # 6 Polarization: -12.00 SS G_CDS: -1.45 Total: -13.46 kcal Atomic # 7 Polarization: -36.46 SS G_CDS: 0.11 Total: -36.35 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: 0.07 Total: -11.53 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.46 -8.98 -38.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597904020.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.692 kcal (2) G-P(sol) polarization free energy of solvation -29.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds