Wall clock time and date at job start Tue Mar 31 2020 01:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47577 * 2 1 4 4 C 1.52998 * 109.47112 * 120.00327 * 2 1 3 5 5 C 1.53006 * 115.55101 * 34.41659 * 4 2 1 6 6 C 1.53002 * 117.49839 * 248.74638 * 4 2 1 7 7 C 1.52999 * 59.99973 * 252.48295 * 6 4 2 8 8 H 1.09003 * 117.49831 * 107.48560 * 7 6 4 9 9 C 1.50699 * 117.50321 * 252.50762 * 7 6 4 10 10 O 1.21281 * 119.99637 * 68.62025 * 9 7 6 11 11 N 1.34774 * 120.00127 * 248.62694 * 9 7 6 12 12 C 1.46923 * 120.62965 * 359.71449 * 11 9 7 13 13 C 1.52760 * 109.00961 * 233.58561 * 12 11 9 14 14 C 1.53041 * 109.38323 * 305.59075 * 13 12 11 15 15 C 1.53046 * 109.53854 * 61.23870 * 14 13 12 16 16 H 1.08996 * 109.49675 * 58.58524 * 15 14 13 17 17 C 1.50700 * 109.49505 * 178.68278 * 15 14 13 18 18 H 1.08006 * 119.99846 * 119.84175 * 17 15 14 19 19 C 1.37874 * 120.00379 * 299.83740 * 17 15 14 20 20 N 1.31515 * 119.99953 * 359.97438 * 19 17 15 21 21 Si 1.86796 * 120.00274 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47647 * 89.99706 * 21 19 17 23 23 H 1.48501 * 109.47126 * 210.00154 * 21 19 17 24 24 H 1.48507 * 109.46956 * 329.99463 * 21 19 17 25 25 C 1.46927 * 120.63005 * 180.02562 * 11 9 7 26 26 H 1.09005 * 109.47197 * 300.00203 * 1 2 3 27 27 H 1.09000 * 109.47235 * 59.99731 * 1 2 3 28 28 H 1.09003 * 109.47310 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47197 * 239.99797 * 2 1 3 30 30 H 1.08994 * 109.47263 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47058 * 300.00378 * 3 2 1 32 32 H 1.09005 * 109.46501 * 59.99640 * 3 2 1 33 33 H 1.09001 * 109.47002 * 325.72008 * 5 4 2 34 34 H 1.08993 * 109.46955 * 85.72445 * 5 4 2 35 35 H 1.09000 * 109.47050 * 205.72274 * 5 4 2 36 36 H 1.08995 * 117.50025 * 359.97438 * 6 4 2 37 37 H 1.08998 * 117.49666 * 144.97432 * 6 4 2 38 38 H 1.08997 * 109.58805 * 353.41904 * 12 11 9 39 39 H 1.08998 * 109.58397 * 113.85227 * 12 11 9 40 40 H 1.08995 * 109.57104 * 185.55590 * 13 12 11 41 41 H 1.09003 * 109.38535 * 65.51598 * 13 12 11 42 42 H 1.08996 * 109.46492 * 301.21783 * 14 13 12 43 43 H 1.09000 * 109.46117 * 181.25774 * 14 13 12 44 44 H 0.97001 * 119.99960 * 179.97438 * 20 19 17 45 45 H 1.09007 * 109.58250 * 246.15337 * 25 11 9 46 46 H 1.09000 * 109.58600 * 6.43264 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.1863 -1.8979 1.7266 6 6 2.7393 0.1230 2.3165 7 6 3.5549 -0.8260 1.4361 8 1 4.1886 -0.3811 0.6689 9 6 4.0920 -2.0801 2.0763 10 8 3.3305 -2.9587 2.4215 11 7 5.4185 -2.2253 2.2652 12 6 6.3539 -1.1725 1.8467 13 6 7.4224 -1.7863 0.9439 14 6 8.0824 -2.9633 1.6658 15 6 7.0305 -4.0330 1.9684 16 1 6.5701 -4.3641 1.0376 17 6 7.6873 -5.2055 2.6503 18 1 7.3717 -5.5007 3.6402 19 6 8.6910 -5.9014 2.0107 20 7 9.0750 -5.5423 0.8052 21 14 9.5046 -7.3551 2.8557 22 1 8.7674 -8.5996 2.5192 23 1 10.9110 -7.4727 2.3936 24 1 9.4824 -7.1489 4.3262 25 6 5.9572 -3.4425 2.8874 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9562 0.8900 33 1 0.1349 -1.6868 1.5313 34 1 1.4809 -2.8010 1.1921 35 1 1.3349 -2.0441 2.7965 36 1 2.8364 1.1922 2.1285 37 1 2.5908 -0.1595 3.3587 38 1 5.8138 -0.4006 1.2985 39 1 6.8288 -0.7354 2.7251 40 1 8.1764 -1.0354 0.7079 41 1 6.9588 -2.1384 0.0224 42 1 8.5250 -2.6150 2.5990 43 1 8.8604 -3.3883 1.0316 44 1 9.7814 -6.0317 0.3553 45 1 6.3990 -3.1945 3.8526 46 1 5.1549 -4.1668 3.0280 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597904020.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:34 Heat of formation + Delta-G solvation = -43.090899 kcal Electronic energy + Delta-G solvation = -22922.467246 eV Core-core repulsion = 19811.501959 eV Total energy + Delta-G solvation = -3110.965287 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.58954 -39.60718 -38.02655 -35.38036 -33.99998 -33.03093 -32.00620 -30.18147 -27.60511 -27.00392 -26.36817 -24.35061 -23.82402 -23.25792 -21.27736 -19.79070 -19.03933 -18.59721 -18.10799 -16.83953 -16.59125 -16.38672 -15.79793 -15.35192 -15.13400 -14.98577 -14.72355 -14.49885 -14.12509 -13.90386 -13.70967 -13.61785 -13.49965 -13.30681 -12.89792 -12.74052 -12.63108 -12.49522 -12.44872 -12.22119 -12.04063 -11.86333 -11.84682 -11.59773 -11.51185 -11.24609 -10.97123 -10.85029 -10.61586 -10.43686 -10.34098 -9.45777 -8.12557 -6.28123 1.39383 1.40373 1.50494 1.57848 2.11705 2.42282 2.82837 3.13788 3.50315 3.69311 3.84833 3.97809 4.01843 4.19436 4.26105 4.29949 4.35656 4.45281 4.53654 4.61937 4.69699 4.78517 4.79863 4.85621 4.87290 4.93811 4.97011 5.00072 5.02148 5.10077 5.10998 5.13506 5.24193 5.27513 5.28734 5.47392 5.49579 5.53868 5.56064 5.59277 5.63172 5.90968 6.11495 6.32519 6.61138 6.81352 7.29159 7.40138 8.91227 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.031559 B = 0.003926 C = 0.003733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.016818 B = 7130.108310 C = 7498.794517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.059 4.059 3 C -0.149 4.149 4 C -0.089 4.089 5 C -0.102 4.102 6 C -0.128 4.128 7 C -0.194 4.194 8 H 0.142 0.858 9 C 0.527 3.473 10 O -0.586 6.586 11 N -0.606 5.606 12 C 0.112 3.888 13 C -0.128 4.128 14 C -0.105 4.105 15 C 0.042 3.958 16 H -0.017 1.017 17 C -0.540 4.540 18 H 0.051 0.949 19 C 0.017 3.983 20 N -0.913 5.913 21 Si 0.956 3.044 22 H -0.280 1.280 23 H -0.279 1.279 24 H -0.267 1.267 25 C 0.131 3.869 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.052 0.948 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.034 0.966 35 H 0.040 0.960 36 H 0.140 0.860 37 H 0.085 0.915 38 H 0.112 0.888 39 H 0.079 0.921 40 H 0.091 0.909 41 H 0.042 0.958 42 H 0.037 0.963 43 H 0.062 0.938 44 H 0.262 0.738 45 H 0.059 0.941 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.678 17.830 -1.442 21.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.077 4.077 3 C -0.206 4.206 4 C -0.090 4.090 5 C -0.159 4.159 6 C -0.165 4.165 7 C -0.215 4.215 8 H 0.159 0.841 9 C 0.317 3.683 10 O -0.467 6.467 11 N -0.337 5.337 12 C -0.010 4.010 13 C -0.166 4.166 14 C -0.143 4.143 15 C 0.023 3.977 16 H 0.002 0.998 17 C -0.578 4.578 18 H 0.070 0.930 19 C -0.182 4.182 20 N -0.552 5.552 21 Si 0.781 3.219 22 H -0.206 1.206 23 H -0.204 1.204 24 H -0.191 1.191 25 C 0.009 3.991 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.054 0.946 35 H 0.060 0.940 36 H 0.158 0.842 37 H 0.103 0.897 38 H 0.130 0.870 39 H 0.097 0.903 40 H 0.109 0.891 41 H 0.061 0.939 42 H 0.056 0.944 43 H 0.080 0.920 44 H 0.071 0.929 45 H 0.077 0.923 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.927 17.332 -1.386 21.085 hybrid contribution 0.915 -1.716 0.308 1.969 sum -11.012 15.617 -1.079 19.139 Atomic orbital electron populations 1.21879 0.93956 1.01843 1.02483 1.20635 0.96606 0.96242 0.94253 1.21977 1.01327 0.94421 1.02840 1.21699 0.89923 0.98787 0.98551 1.21345 0.98863 0.95551 1.00131 1.23381 0.99432 0.98188 0.95541 1.22376 0.96627 0.96940 1.05524 0.84078 1.20464 0.81507 0.88319 0.77982 1.90637 1.57335 1.44937 1.53836 1.48334 1.06197 1.19540 1.59649 1.21875 0.90752 0.89187 0.99159 1.21852 0.98366 0.98398 0.98020 1.21414 0.99443 0.94467 0.98990 1.18856 0.92116 0.93609 0.93160 0.99847 1.21443 1.19449 1.14363 1.02569 0.93042 1.25699 0.97243 0.99807 0.95467 1.70012 1.30053 1.41241 1.13905 0.85589 0.77716 0.79471 0.79080 1.20567 1.20390 1.19141 1.21501 0.96073 0.85659 0.95905 0.91904 0.91431 0.92906 0.91636 0.92185 0.91513 0.91205 0.90619 0.94644 0.94042 0.84202 0.89688 0.87009 0.90253 0.89091 0.93929 0.94410 0.91963 0.92897 0.92319 0.93121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 8.20 71.98 0.59 -1.55 16 2 C -0.06 -1.01 3.15 -10.80 -0.03 -1.04 16 3 C -0.15 -1.81 7.79 71.98 0.56 -1.25 16 4 C -0.09 -2.03 2.46 -52.18 -0.13 -2.16 16 5 C -0.10 -2.84 7.74 71.98 0.56 -2.28 16 6 C -0.13 -2.55 8.92 30.59 0.27 -2.27 16 7 C -0.19 -4.95 4.50 -11.54 -0.05 -5.00 16 8 H 0.14 2.98 6.01 -2.39 -0.01 2.96 16 9 C 0.53 19.42 7.46 87.66 0.65 20.07 16 10 O -0.59 -26.02 12.52 -3.03 -0.04 -26.06 16 11 N -0.61 -22.84 2.98 -819.84 -2.44 -25.29 16 12 C 0.11 3.26 6.32 86.22 0.54 3.81 16 13 C -0.13 -4.43 6.06 30.53 0.19 -4.25 16 14 C -0.10 -4.82 4.96 30.62 0.15 -4.67 16 15 C 0.04 2.17 2.25 -11.48 -0.03 2.15 16 16 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 17 C -0.54 -30.66 8.56 25.60 0.22 -30.44 16 18 H 0.05 2.89 7.74 -2.91 -0.02 2.87 16 19 C 0.02 0.95 5.30 84.65 0.45 1.40 16 20 N -0.91 -53.04 11.32 21.45 0.24 -52.80 16 21 Si 0.96 44.27 29.54 68.60 2.03 46.29 16 22 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 23 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 24 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 25 C 0.13 6.01 5.66 86.35 0.49 6.50 16 26 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 27 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.05 0.87 6.44 -2.39 -0.02 0.86 16 29 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 30 H 0.06 0.70 7.07 -2.39 -0.02 0.69 16 31 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.07 0.73 6.97 -2.38 -0.02 0.71 16 33 H 0.08 1.69 5.58 -2.39 -0.01 1.67 16 34 H 0.03 1.19 7.26 -2.39 -0.02 1.17 16 35 H 0.04 1.30 7.02 -2.39 -0.02 1.29 16 36 H 0.14 1.84 5.85 -2.39 -0.01 1.83 16 37 H 0.08 1.91 8.05 -2.39 -0.02 1.89 16 38 H 0.11 2.41 5.51 -2.39 -0.01 2.39 16 39 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 41 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.06 3.27 6.05 -2.39 -0.01 3.26 16 44 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 45 H 0.06 2.59 8.14 -2.38 -0.02 2.57 16 46 H 0.05 2.56 7.00 -2.39 -0.02 2.54 16 Total: -1.00 -68.48 343.30 5.17 -63.31 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: 0.95 Total: 15.51 kcal Atomic # 6 Polarization: -25.41 SS G_CDS: 4.43 Total: -20.97 kcal Atomic # 7 Polarization: -75.89 SS G_CDS: -2.20 Total: -78.09 kcal Atomic # 8 Polarization: -26.02 SS G_CDS: -0.04 Total: -26.06 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Total: -68.48 5.17 -63.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597904020.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.223 kcal (2) G-P(sol) polarization free energy of solvation -68.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds