Wall clock time and date at job start Tue Mar 31 2020 00:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47539 * 2 1 4 4 C 1.52998 * 109.47563 * 177.45078 * 3 2 1 5 5 C 1.50702 * 112.90720 * 53.42919 * 4 3 2 6 6 O 1.21277 * 120.00549 * 251.62680 * 5 4 3 7 7 N 1.34782 * 119.99663 * 71.62218 * 5 4 3 8 8 C 1.46932 * 120.63025 * 354.92881 * 7 5 4 9 9 C 1.53186 * 108.77494 * 126.36472 * 8 7 5 10 10 C 1.53043 * 109.31547 * 54.63208 * 9 8 7 11 11 C 1.53036 * 109.53970 * 298.63345 * 10 9 8 12 12 H 1.09005 * 109.49820 * 301.41602 * 11 10 9 13 13 C 1.50692 * 109.50059 * 181.34489 * 11 10 9 14 14 H 1.07998 * 120.00507 * 240.00134 * 13 11 10 15 15 C 1.37882 * 119.99676 * 60.00030 * 13 11 10 16 16 N 1.31509 * 119.99893 * 0.02562 * 15 13 11 17 17 Si 1.86803 * 119.99960 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.46994 * 90.00110 * 17 15 13 19 19 H 1.48502 * 109.47217 * 210.00102 * 17 15 13 20 20 H 1.48501 * 109.47228 * 330.00123 * 17 15 13 21 21 C 1.46923 * 120.63010 * 174.64105 * 7 5 4 22 22 C 1.53775 * 113.61832 * 184.68644 * 4 3 2 23 23 C 1.53778 * 87.08232 * 89.11328 * 22 4 3 24 24 C 1.53781 * 87.08301 * 25.43326 * 23 22 4 25 25 H 1.08998 * 109.47053 * 59.99622 * 1 2 3 26 26 H 1.08996 * 109.46862 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46382 * 299.99755 * 1 2 3 28 28 H 1.09004 * 109.46812 * 240.00199 * 2 1 3 29 29 H 1.09001 * 109.47540 * 120.00527 * 2 1 3 30 30 H 1.09001 * 109.47006 * 57.44689 * 3 2 1 31 31 H 1.09004 * 109.46784 * 297.45374 * 3 2 1 32 32 H 1.08999 * 109.58259 * 246.14884 * 8 7 5 33 33 H 1.09000 * 109.58477 * 6.57250 * 8 7 5 34 34 H 1.09002 * 109.49984 * 174.58763 * 9 8 7 35 35 H 1.09002 * 109.50235 * 294.64892 * 9 8 7 36 36 H 1.09003 * 109.45829 * 58.65439 * 10 9 8 37 37 H 1.09000 * 109.46254 * 178.61087 * 10 9 8 38 38 H 0.97000 * 119.99839 * 180.02562 * 16 15 13 39 39 H 1.09000 * 109.58353 * 353.42401 * 21 7 5 40 40 H 1.09000 * 109.58481 * 113.85121 * 21 7 5 41 41 H 1.09004 * 113.61034 * 334.56950 * 22 4 3 42 42 H 1.08994 * 113.69284 * 203.67931 * 22 4 3 43 43 H 1.09006 * 113.61342 * 139.98439 * 23 22 4 44 44 H 1.09003 * 113.61298 * 270.88455 * 23 22 4 45 45 H 1.08998 * 113.61135 * 89.11096 * 24 23 22 46 46 H 1.08993 * 113.61991 * 220.01959 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5688 1.4429 0.0642 5 6 4.2013 0.5995 -1.0127 6 8 4.7311 -0.4530 -0.7260 7 7 4.1782 1.0151 -2.2947 8 6 3.4454 2.2307 -2.6746 9 6 4.3962 3.1632 -3.4315 10 6 5.0144 2.4078 -4.6102 11 6 5.8205 1.2162 -4.0883 12 1 6.5974 1.5712 -3.4110 13 6 6.4559 0.4924 -5.2473 14 1 6.2198 -0.5454 -5.4308 15 6 7.3387 1.1551 -6.0735 16 7 7.6265 2.4186 -5.8498 17 14 8.1268 0.2576 -7.5098 18 1 7.2729 0.4069 -8.7155 19 1 9.4682 0.8354 -7.7786 20 1 8.2661 -1.1829 -7.1771 21 6 4.8905 0.2646 -3.3378 22 6 4.1799 2.8489 0.1842 23 6 4.0628 2.6841 1.7086 24 6 4.1263 1.1661 1.4704 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8935 -0.5139 0.8899 30 1 1.6399 1.9693 0.8662 31 1 1.7145 1.9429 -0.9120 32 1 2.6057 1.9653 -3.3168 33 1 3.0789 2.7314 -1.7784 34 1 3.8416 4.0252 -3.8024 35 1 5.1862 3.5003 -2.7603 36 1 4.2221 2.0501 -5.2679 37 1 5.6725 3.0764 -5.1651 38 1 8.2473 2.8849 -6.4313 39 1 5.4771 -0.5314 -2.8792 40 1 4.1709 -0.1643 -4.0353 41 1 3.5445 3.6371 -0.2198 42 1 5.2086 2.9110 -0.1706 43 1 4.9192 3.0762 2.2573 44 1 3.1088 3.0231 2.1124 45 1 5.1405 0.7668 1.4671 46 1 3.4478 0.5958 2.1047 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597908297.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:18 Heat of formation + Delta-G solvation = -55.753354 kcal Electronic energy + Delta-G solvation = -23551.675676 eV Core-core repulsion = 20440.161304 eV Total energy + Delta-G solvation = -3111.514372 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.01647 -39.36366 -38.09934 -35.39156 -35.02735 -33.01546 -32.09015 -29.33081 -27.24252 -26.68178 -26.49834 -24.91311 -23.35627 -22.45348 -21.77504 -20.45308 -19.26729 -18.45807 -17.67996 -17.13937 -16.66660 -16.42613 -16.03174 -15.54870 -15.21496 -15.07902 -14.63170 -14.54427 -14.26341 -14.16638 -13.64937 -13.51553 -13.31519 -13.22286 -12.87545 -12.79516 -12.71137 -12.59897 -12.38778 -12.12359 -11.93414 -11.87769 -11.85711 -11.64259 -11.59621 -11.31762 -11.18480 -10.98611 -10.85239 -10.48500 -10.33543 -9.46979 -8.12671 -6.28135 1.38944 1.40089 1.50295 1.70972 2.15076 2.42540 3.13533 3.42195 3.44428 3.74692 3.83080 3.91950 4.09565 4.18564 4.25065 4.27339 4.35167 4.44873 4.51694 4.59953 4.73523 4.77709 4.79114 4.82002 4.84901 4.88079 4.89441 4.96903 5.00677 5.06660 5.12159 5.12440 5.22674 5.28050 5.30042 5.37445 5.46354 5.48566 5.53787 5.58763 5.60082 5.90926 6.12032 6.32785 6.62126 6.80874 7.27502 7.40024 8.90946 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.025137 B = 0.004680 C = 0.004528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.625667 B = 5981.503132 C = 6182.793387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.125 4.125 3 C -0.087 4.087 4 C -0.103 4.103 5 C 0.518 3.482 6 O -0.601 6.601 7 N -0.604 5.604 8 C 0.105 3.895 9 C -0.126 4.126 10 C -0.105 4.105 11 C 0.043 3.957 12 H -0.016 1.016 13 C -0.540 4.540 14 H 0.049 0.951 15 C 0.019 3.981 16 N -0.912 5.912 17 Si 0.955 3.045 18 H -0.270 1.270 19 H -0.282 1.282 20 H -0.274 1.274 21 C 0.130 3.870 22 C -0.128 4.128 23 C -0.120 4.120 24 C -0.119 4.119 25 H 0.059 0.941 26 H 0.050 0.950 27 H 0.073 0.927 28 H 0.027 0.973 29 H 0.056 0.944 30 H 0.108 0.892 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.117 0.883 34 H 0.090 0.910 35 H 0.046 0.954 36 H 0.035 0.965 37 H 0.063 0.937 38 H 0.262 0.738 39 H 0.046 0.954 40 H 0.056 0.944 41 H 0.103 0.897 42 H 0.059 0.941 43 H 0.075 0.925 44 H 0.114 0.886 45 H 0.056 0.944 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.016 4.902 13.029 20.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.163 4.163 3 C -0.124 4.124 4 C -0.106 4.106 5 C 0.309 3.691 6 O -0.483 6.483 7 N -0.334 5.334 8 C -0.016 4.016 9 C -0.164 4.164 10 C -0.143 4.143 11 C 0.024 3.976 12 H 0.002 0.998 13 C -0.579 4.579 14 H 0.067 0.933 15 C -0.180 4.180 16 N -0.551 5.551 17 Si 0.780 3.220 18 H -0.195 1.195 19 H -0.207 1.207 20 H -0.199 1.199 21 C 0.008 3.992 22 C -0.165 4.165 23 C -0.157 4.157 24 C -0.156 4.156 25 H 0.078 0.922 26 H 0.069 0.931 27 H 0.092 0.908 28 H 0.045 0.955 29 H 0.075 0.925 30 H 0.126 0.874 31 H 0.101 0.899 32 H 0.094 0.906 33 H 0.135 0.865 34 H 0.109 0.891 35 H 0.065 0.935 36 H 0.054 0.946 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.074 0.926 41 H 0.121 0.879 42 H 0.077 0.923 43 H 0.094 0.906 44 H 0.133 0.867 45 H 0.074 0.926 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -14.643 4.503 13.091 20.151 hybrid contribution 1.379 -0.954 -1.308 2.127 sum -13.264 3.548 11.783 18.093 Atomic orbital electron populations 1.21714 0.93660 1.01919 1.02807 1.21482 0.97352 0.96793 1.00679 1.21551 0.88593 0.97451 1.04832 1.22319 0.98108 0.96695 0.93524 1.21279 0.78742 0.85635 0.83482 1.90603 1.48794 1.26221 1.82654 1.48315 1.50648 1.27306 1.07152 1.22173 0.93943 0.84332 1.01181 1.21915 0.98660 0.98405 0.97468 1.21413 0.97727 0.98245 0.96908 1.18771 0.92200 0.93288 0.93308 0.99761 1.21422 1.26315 0.97315 1.12835 0.93266 1.25669 0.96622 0.95639 1.00084 1.70001 1.35271 1.10416 1.39369 0.85606 0.77916 0.78708 0.79732 1.19530 1.20739 1.19868 1.21417 0.94550 0.94681 0.88589 1.23057 1.00657 0.94433 0.98393 1.22828 1.04026 0.94010 0.94823 1.22819 1.00575 0.98458 0.93794 0.92201 0.93074 0.90821 0.95450 0.92493 0.87398 0.89891 0.90614 0.86505 0.89133 0.93524 0.94613 0.91823 0.92867 0.93565 0.92618 0.87893 0.92262 0.90637 0.86744 0.92569 0.89866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 9.91 71.98 0.71 -1.58 16 2 C -0.13 -2.74 5.54 30.59 0.17 -2.57 16 3 C -0.09 -1.60 4.27 30.59 0.13 -1.47 16 4 C -0.10 -2.61 0.31 -52.40 -0.02 -2.63 16 5 C 0.52 19.36 5.38 87.66 0.47 19.83 16 6 O -0.60 -27.97 15.74 -3.02 -0.05 -28.02 16 7 N -0.60 -22.88 2.98 -819.72 -2.44 -25.32 16 8 C 0.11 3.07 5.23 86.36 0.45 3.52 16 9 C -0.13 -4.30 6.08 30.67 0.19 -4.12 16 10 C -0.10 -4.79 4.96 30.62 0.15 -4.63 16 11 C 0.04 2.26 2.24 -11.61 -0.03 2.24 16 12 H -0.02 -0.94 8.14 -2.38 -0.02 -0.96 16 13 C -0.54 -30.75 8.57 25.60 0.22 -30.53 16 14 H 0.05 2.79 7.75 -2.91 -0.02 2.77 16 15 C 0.02 1.07 5.30 84.66 0.45 1.52 16 16 N -0.91 -52.64 11.31 21.45 0.24 -52.40 16 17 Si 0.95 44.25 29.54 68.60 2.03 46.28 16 18 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 19 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 20 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 21 C 0.13 6.06 5.62 86.22 0.48 6.55 16 22 C -0.13 -2.75 5.77 31.12 0.18 -2.57 16 23 C -0.12 -2.01 7.73 31.12 0.24 -1.77 16 24 C -0.12 -2.83 6.76 31.12 0.21 -2.62 16 25 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.03 0.78 7.34 -2.38 -0.02 0.76 16 29 H 0.06 1.31 7.57 -2.39 -0.02 1.29 16 30 H 0.11 1.32 7.31 -2.39 -0.02 1.30 16 31 H 0.08 1.38 6.06 -2.39 -0.01 1.37 16 32 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.12 2.56 3.07 -2.39 -0.01 2.55 16 34 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 35 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.06 3.32 6.04 -2.39 -0.01 3.31 16 38 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 39 H 0.05 2.39 7.04 -2.39 -0.02 2.37 16 40 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 41 H 0.10 1.65 7.09 -2.39 -0.02 1.63 16 42 H 0.06 1.63 8.10 -2.39 -0.02 1.61 16 43 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 44 H 0.11 1.24 7.61 -2.39 -0.02 1.22 16 45 H 0.06 1.69 7.83 -2.39 -0.02 1.67 16 46 H 0.08 1.74 7.61 -2.39 -0.02 1.72 16 Total: -1.00 -70.13 344.69 4.73 -65.40 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: 0.94 Total: 14.90 kcal Atomic # 6 Polarization: -24.85 SS G_CDS: 4.02 Total: -20.83 kcal Atomic # 7 Polarization: -75.52 SS G_CDS: -2.20 Total: -77.72 kcal Atomic # 8 Polarization: -27.97 SS G_CDS: -0.05 Total: -28.02 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -70.13 4.73 -65.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597908297.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.645 kcal (2) G-P(sol) polarization free energy of solvation -70.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds