Wall clock time and date at job start Tue Mar 31 2020 00:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47404 * 2 1 4 4 C 1.52995 * 109.47463 * 175.26781 * 3 2 1 5 5 C 1.50702 * 112.84879 * 300.44883 * 4 3 2 6 6 O 1.21279 * 120.00698 * 115.19103 * 5 4 3 7 7 N 1.34779 * 119.99805 * 295.19149 * 5 4 3 8 8 C 1.46932 * 120.62913 * 355.07346 * 7 5 4 9 9 C 1.53193 * 108.77290 * 233.58846 * 8 7 5 10 10 C 1.53046 * 109.31285 * 305.35997 * 9 8 7 11 11 C 1.53042 * 109.53484 * 61.36998 * 10 9 8 12 12 H 1.09003 * 109.49988 * 58.58122 * 11 10 9 13 13 C 1.50700 * 109.49884 * 178.65283 * 11 10 9 14 14 H 1.08000 * 119.99995 * 119.99606 * 13 11 10 15 15 C 1.37881 * 119.99443 * 299.99817 * 13 11 10 16 16 N 1.31515 * 120.00250 * 359.97438 * 15 13 11 17 17 Si 1.86804 * 119.99512 * 179.97438 * 15 13 11 18 18 H 1.48493 * 109.46976 * 59.99847 * 17 15 13 19 19 H 1.48495 * 109.46694 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47090 * 299.99786 * 17 15 13 21 21 C 1.46927 * 120.63368 * 175.05026 * 7 5 4 22 22 C 1.53786 * 113.69155 * 71.71061 * 4 3 2 23 23 C 1.53778 * 87.07701 * 89.13202 * 22 4 3 24 24 C 1.53777 * 87.08539 * 25.43295 * 23 22 4 25 25 H 1.09002 * 109.47122 * 60.00141 * 1 2 3 26 26 H 1.08990 * 109.47557 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.47092 * 300.00618 * 1 2 3 28 28 H 1.08995 * 109.47149 * 239.99608 * 2 1 3 29 29 H 1.09001 * 109.46660 * 119.99596 * 2 1 3 30 30 H 1.09004 * 109.47394 * 55.26483 * 3 2 1 31 31 H 1.09000 * 109.46940 * 295.26451 * 3 2 1 32 32 H 1.08994 * 109.58778 * 113.79933 * 8 7 5 33 33 H 1.09004 * 109.58647 * 353.36863 * 8 7 5 34 34 H 1.08998 * 109.49609 * 185.41262 * 9 8 7 35 35 H 1.08997 * 109.50463 * 65.31514 * 9 8 7 36 36 H 1.08998 * 109.45958 * 181.38394 * 10 9 8 37 37 H 1.08997 * 109.46167 * 301.36141 * 10 9 8 38 38 H 0.97001 * 119.99602 * 179.97438 * 16 15 13 39 39 H 1.09002 * 109.58389 * 6.62242 * 21 7 5 40 40 H 1.08997 * 109.69862 * 246.27136 * 21 7 5 41 41 H 1.08998 * 113.61598 * 203.67884 * 22 4 3 42 42 H 1.09002 * 113.61378 * 334.58155 * 22 4 3 43 43 H 1.09007 * 113.61260 * 270.87696 * 23 22 4 44 44 H 1.09000 * 113.61492 * 139.98973 * 23 22 4 45 45 H 1.08997 * 113.61541 * 220.02064 * 24 23 22 46 46 H 1.08997 * 113.69142 * 89.12464 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5654 1.4441 0.1190 5 6 4.0549 0.7742 1.3770 6 8 4.7109 -0.2434 1.3064 7 7 3.7636 1.3059 2.5808 8 6 3.0633 2.5937 2.6806 9 6 3.8806 3.5313 3.5749 10 6 4.1381 2.8499 4.9209 11 6 4.9451 1.5685 4.6997 12 1 5.8865 1.8118 4.2071 13 6 5.2266 0.9156 6.0284 14 1 4.8699 -0.0847 6.2250 15 6 5.9396 1.5954 6.9931 16 7 6.3743 2.8132 6.7536 17 14 6.2879 0.7864 8.6405 18 1 7.0705 -0.4572 8.4255 19 1 7.0649 1.7193 9.4955 20 1 5.0048 0.4543 9.3101 21 6 4.1399 0.6086 3.8181 22 6 4.2850 0.9662 -1.1533 23 6 4.2667 2.4316 -1.6192 24 6 4.2015 2.8213 -0.1331 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0275 0.0005 27 1 -0.3634 0.5140 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8901 30 1 1.6092 1.9803 0.8445 31 1 1.7477 1.9312 -0.9294 32 1 2.0766 2.4401 3.1174 33 1 2.9616 3.0323 1.6879 34 1 3.3261 4.4558 3.7355 35 1 4.8320 3.7562 3.0931 36 1 4.6984 3.5246 5.5681 37 1 3.1862 2.6028 5.3909 38 1 6.8756 3.2915 7.4325 39 1 4.7485 -0.2627 3.5758 40 1 3.2422 0.2912 4.3485 41 1 5.2871 0.5791 -0.9690 42 1 3.6815 0.3033 -1.7734 43 1 3.3719 2.7002 -2.1808 44 1 5.1869 2.7444 -2.1128 45 1 3.5307 3.6559 0.0705 46 1 5.1802 2.9418 0.3314 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597908298.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:28 Heat of formation + Delta-G solvation = -39.681883 kcal Electronic energy + Delta-G solvation = -23532.149797 eV Core-core repulsion = 20421.332336 eV Total energy + Delta-G solvation = -3110.817461 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -40.77250 -37.99448 -36.48683 -34.21878 -33.41381 -31.28554 -30.31656 -28.31101 -25.89794 -25.36765 -24.92639 -23.67782 -21.72642 -21.44754 -20.36988 -18.95854 -17.92298 -16.73015 -16.18491 -15.71370 -15.32715 -15.03436 -14.60727 -14.21716 -13.75645 -13.53604 -13.37078 -13.24049 -12.76521 -12.71852 -12.37086 -12.23702 -11.99258 -11.93670 -11.83264 -11.54514 -11.13574 -11.07600 -10.94687 -10.84234 -10.72513 -10.66487 -10.36491 -10.20813 -10.12233 -9.91163 -9.73828 -9.40551 -9.05693 -8.77360 -8.36784 -7.82281 -6.00562 -4.07662 3.12626 3.32053 3.36329 3.39187 3.61467 4.41548 4.43877 4.48687 4.71013 4.77401 4.96796 5.07203 5.15282 5.25902 5.29161 5.43238 5.53354 5.58425 5.65544 5.69496 5.73986 5.78784 5.83758 5.87548 5.88451 5.95528 6.02434 6.14899 6.16336 6.28024 6.31854 6.35828 6.40934 6.48045 6.51713 6.69158 6.84795 7.03598 7.20447 7.36226 7.70265 7.94688 8.08789 8.10697 8.39647 8.74716 8.95981 9.57043 11.04815 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.024707 B = 0.004689 C = 0.004517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.993188 B = 5969.599311 C = 6197.735413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C -0.093 4.093 4 C -0.105 4.105 5 C 0.526 3.474 6 O -0.552 6.552 7 N -0.599 5.599 8 C 0.104 3.896 9 C -0.135 4.135 10 C -0.112 4.112 11 C 0.041 3.959 12 H 0.028 0.972 13 C -0.514 4.514 14 H 0.056 0.944 15 C 0.064 3.936 16 N -0.889 5.889 17 Si 0.893 3.107 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C 0.116 3.884 22 C -0.111 4.111 23 C -0.141 4.141 24 C -0.126 4.126 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.079 0.921 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.095 0.905 37 H 0.034 0.966 38 H 0.261 0.739 39 H 0.077 0.923 40 H 0.053 0.947 41 H 0.089 0.911 42 H 0.069 0.931 43 H 0.080 0.920 44 H 0.069 0.931 45 H 0.075 0.925 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.828 2.110 -14.735 17.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.131 4.131 4 C -0.108 4.108 5 C 0.313 3.687 6 O -0.431 6.431 7 N -0.331 5.331 8 C -0.019 4.019 9 C -0.173 4.173 10 C -0.150 4.150 11 C 0.022 3.978 12 H 0.046 0.954 13 C -0.553 4.553 14 H 0.074 0.926 15 C -0.138 4.138 16 N -0.528 5.528 17 Si 0.720 3.280 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.005 4.005 22 C -0.149 4.149 23 C -0.178 4.178 24 C -0.163 4.163 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.113 0.887 37 H 0.053 0.947 38 H 0.070 0.930 39 H 0.095 0.905 40 H 0.071 0.929 41 H 0.108 0.892 42 H 0.088 0.912 43 H 0.099 0.901 44 H 0.087 0.913 45 H 0.094 0.906 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.382 1.713 -14.660 17.489 hybrid contribution 0.201 -0.279 1.114 1.166 sum -9.180 1.434 -13.546 16.426 Atomic orbital electron populations 1.21752 0.95799 1.01553 1.01576 1.21501 0.95583 0.96531 1.02627 1.21467 0.91221 0.97730 1.02642 1.22131 0.96646 0.97864 0.94162 1.20238 0.79600 0.84472 0.84365 1.90639 1.40005 1.25604 1.86812 1.48220 1.56956 1.21563 1.06310 1.21933 0.95317 0.84201 1.00475 1.22003 0.99248 0.97263 0.98769 1.21621 0.99315 1.00064 0.93974 1.18949 0.93784 0.91332 0.93725 0.95370 1.21049 1.34633 1.00956 0.98642 0.92603 1.24929 0.95404 0.94880 0.98538 1.69865 1.37303 1.11208 1.34433 0.86648 0.78378 0.79263 0.83661 1.20236 1.21313 1.20278 1.21964 0.99012 0.96751 0.82751 1.22802 1.01368 0.96160 0.94542 1.22843 1.02015 0.96845 0.96143 1.23022 1.01512 0.95180 0.96604 0.92926 0.92839 0.92716 0.91845 0.91785 0.90849 0.91041 0.92377 0.90273 0.92617 0.92448 0.88704 0.94684 0.92955 0.90490 0.92890 0.89208 0.91192 0.90125 0.91263 0.90628 0.89497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.91 37.16 0.37 -1.07 16 2 C -0.12 -1.46 5.66 -26.73 -0.15 -1.61 16 3 C -0.09 -1.03 4.24 -26.73 -0.11 -1.15 16 4 C -0.10 -1.40 0.29 -154.85 -0.04 -1.45 16 5 C 0.53 9.61 5.56 -10.98 -0.06 9.55 16 6 O -0.55 -12.19 15.55 5.56 0.09 -12.10 16 7 N -0.60 -11.20 2.97 -172.76 -0.51 -11.71 16 8 C 0.10 1.63 4.92 -3.71 -0.02 1.61 16 9 C -0.13 -2.41 6.08 -26.61 -0.16 -2.57 16 10 C -0.11 -2.52 4.96 -26.69 -0.13 -2.65 16 11 C 0.04 1.03 2.25 -91.65 -0.21 0.82 16 12 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 13 C -0.51 -14.06 8.57 -34.44 -0.29 -14.36 16 14 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 15 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 16 N -0.89 -25.10 11.31 55.43 0.63 -24.47 16 17 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 C 0.12 2.57 5.67 -3.71 -0.02 2.54 16 22 C -0.11 -1.38 6.77 -25.92 -0.18 -1.56 16 23 C -0.14 -1.41 7.73 -25.92 -0.20 -1.61 16 24 C -0.13 -1.49 5.79 -25.92 -0.15 -1.64 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.52 8.14 -51.92 -0.42 0.10 16 28 H 0.06 0.72 7.28 -51.93 -0.38 0.34 16 29 H 0.06 0.93 7.23 -51.93 -0.38 0.55 16 30 H 0.07 0.81 6.01 -51.93 -0.31 0.50 16 31 H 0.07 0.65 7.30 -51.93 -0.38 0.27 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.08 1.03 3.32 -51.93 -0.17 0.85 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 36 H 0.09 2.42 6.04 -51.93 -0.31 2.11 16 37 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 39 H 0.08 1.84 7.00 -51.93 -0.36 1.48 16 40 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 41 H 0.09 1.30 7.70 -51.93 -0.40 0.90 16 42 H 0.07 0.79 7.22 -51.93 -0.38 0.42 16 43 H 0.08 0.67 7.60 -51.93 -0.39 0.28 16 44 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.08 0.77 7.04 -51.93 -0.37 0.41 16 46 H 0.09 1.18 8.09 -51.93 -0.42 0.76 16 LS Contribution 343.70 15.07 5.18 5.18 Total: -1.00 -29.84 343.70 -9.12 -38.96 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -8.02 Total: 1.39 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: -1.46 Total: -13.47 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: 0.11 Total: -36.18 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: 0.09 Total: -12.10 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.84 -9.12 -38.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597908298.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.723 kcal (2) G-P(sol) polarization free energy of solvation -29.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds