Wall clock time and date at job start Tue Mar 31 2020 00:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47404 * 2 1 4 4 C 1.52995 * 109.47463 * 175.26781 * 3 2 1 5 5 C 1.50702 * 112.84879 * 300.44883 * 4 3 2 6 6 O 1.21279 * 120.00698 * 115.19103 * 5 4 3 7 7 N 1.34779 * 119.99805 * 295.19149 * 5 4 3 8 8 C 1.46932 * 120.62913 * 355.07346 * 7 5 4 9 9 C 1.53193 * 108.77290 * 233.58846 * 8 7 5 10 10 C 1.53046 * 109.31285 * 305.35997 * 9 8 7 11 11 C 1.53042 * 109.53484 * 61.36998 * 10 9 8 12 12 H 1.09003 * 109.49988 * 58.58122 * 11 10 9 13 13 C 1.50700 * 109.49884 * 178.65283 * 11 10 9 14 14 H 1.08000 * 119.99995 * 119.99606 * 13 11 10 15 15 C 1.37881 * 119.99443 * 299.99817 * 13 11 10 16 16 N 1.31515 * 120.00250 * 359.97438 * 15 13 11 17 17 Si 1.86804 * 119.99512 * 179.97438 * 15 13 11 18 18 H 1.48493 * 109.46976 * 59.99847 * 17 15 13 19 19 H 1.48495 * 109.46694 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47090 * 299.99786 * 17 15 13 21 21 C 1.46927 * 120.63368 * 175.05026 * 7 5 4 22 22 C 1.53786 * 113.69155 * 71.71061 * 4 3 2 23 23 C 1.53778 * 87.07701 * 89.13202 * 22 4 3 24 24 C 1.53777 * 87.08539 * 25.43295 * 23 22 4 25 25 H 1.09002 * 109.47122 * 60.00141 * 1 2 3 26 26 H 1.08990 * 109.47557 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.47092 * 300.00618 * 1 2 3 28 28 H 1.08995 * 109.47149 * 239.99608 * 2 1 3 29 29 H 1.09001 * 109.46660 * 119.99596 * 2 1 3 30 30 H 1.09004 * 109.47394 * 55.26483 * 3 2 1 31 31 H 1.09000 * 109.46940 * 295.26451 * 3 2 1 32 32 H 1.08994 * 109.58778 * 113.79933 * 8 7 5 33 33 H 1.09004 * 109.58647 * 353.36863 * 8 7 5 34 34 H 1.08998 * 109.49609 * 185.41262 * 9 8 7 35 35 H 1.08997 * 109.50463 * 65.31514 * 9 8 7 36 36 H 1.08998 * 109.45958 * 181.38394 * 10 9 8 37 37 H 1.08997 * 109.46167 * 301.36141 * 10 9 8 38 38 H 0.97001 * 119.99602 * 179.97438 * 16 15 13 39 39 H 1.09002 * 109.58389 * 6.62242 * 21 7 5 40 40 H 1.08997 * 109.69862 * 246.27136 * 21 7 5 41 41 H 1.08998 * 113.61598 * 203.67884 * 22 4 3 42 42 H 1.09002 * 113.61378 * 334.58155 * 22 4 3 43 43 H 1.09007 * 113.61260 * 270.87696 * 23 22 4 44 44 H 1.09000 * 113.61492 * 139.98973 * 23 22 4 45 45 H 1.08997 * 113.61541 * 220.02064 * 24 23 22 46 46 H 1.08997 * 113.69142 * 89.12464 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5654 1.4441 0.1190 5 6 4.0549 0.7742 1.3770 6 8 4.7109 -0.2434 1.3064 7 7 3.7636 1.3059 2.5808 8 6 3.0633 2.5937 2.6806 9 6 3.8806 3.5313 3.5749 10 6 4.1381 2.8499 4.9209 11 6 4.9451 1.5685 4.6997 12 1 5.8865 1.8118 4.2071 13 6 5.2266 0.9156 6.0284 14 1 4.8699 -0.0847 6.2250 15 6 5.9396 1.5954 6.9931 16 7 6.3743 2.8132 6.7536 17 14 6.2879 0.7864 8.6405 18 1 7.0705 -0.4572 8.4255 19 1 7.0649 1.7193 9.4955 20 1 5.0048 0.4543 9.3101 21 6 4.1399 0.6086 3.8181 22 6 4.2850 0.9662 -1.1533 23 6 4.2667 2.4316 -1.6192 24 6 4.2015 2.8213 -0.1331 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0275 0.0005 27 1 -0.3634 0.5140 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8901 30 1 1.6092 1.9803 0.8445 31 1 1.7477 1.9312 -0.9294 32 1 2.0766 2.4401 3.1174 33 1 2.9616 3.0323 1.6879 34 1 3.3261 4.4558 3.7355 35 1 4.8320 3.7562 3.0931 36 1 4.6984 3.5246 5.5681 37 1 3.1862 2.6028 5.3909 38 1 6.8756 3.2915 7.4325 39 1 4.7485 -0.2627 3.5758 40 1 3.2422 0.2912 4.3485 41 1 5.2871 0.5791 -0.9690 42 1 3.6815 0.3033 -1.7734 43 1 3.3719 2.7002 -2.1808 44 1 5.1869 2.7444 -2.1128 45 1 3.5307 3.6559 0.0705 46 1 5.1802 2.9418 0.3314 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597908298.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:23 Heat of formation + Delta-G solvation = -55.938184 kcal Electronic energy + Delta-G solvation = -23532.854723 eV Core-core repulsion = 20421.332336 eV Total energy + Delta-G solvation = -3111.522387 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 4.62 seconds Orbital eigenvalues (eV) -42.00902 -39.37122 -38.08210 -35.40351 -34.99492 -33.02623 -32.06884 -29.32051 -27.26254 -26.66596 -26.50448 -24.92421 -23.35909 -22.41241 -21.80016 -20.44427 -19.26039 -18.45416 -17.70575 -17.13513 -16.70111 -16.37690 -16.07695 -15.47092 -15.15054 -15.09496 -14.60902 -14.51726 -14.33903 -14.19763 -13.66262 -13.54022 -13.27897 -13.24498 -12.87559 -12.75480 -12.70449 -12.60347 -12.42791 -12.09862 -11.95597 -11.86908 -11.84463 -11.62947 -11.58736 -11.32332 -11.17185 -10.97783 -10.85571 -10.48216 -10.35114 -9.46190 -8.12205 -6.27955 1.39546 1.41225 1.48750 1.70241 2.15084 2.42673 3.13814 3.42538 3.45460 3.72795 3.84432 3.92640 4.11143 4.18449 4.25270 4.28619 4.35884 4.44844 4.52288 4.59601 4.72482 4.78605 4.78648 4.82011 4.84352 4.88611 4.89756 4.97410 5.00350 5.06891 5.11890 5.12553 5.23181 5.28429 5.28901 5.38525 5.46245 5.47894 5.53752 5.58815 5.60842 5.91104 6.12112 6.32719 6.62296 6.81030 7.27747 7.40151 8.91184 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.024707 B = 0.004689 C = 0.004517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.993188 B = 5969.599311 C = 6197.735413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.125 4.125 3 C -0.088 4.088 4 C -0.103 4.103 5 C 0.517 3.483 6 O -0.602 6.602 7 N -0.604 5.604 8 C 0.106 3.894 9 C -0.127 4.127 10 C -0.104 4.104 11 C 0.043 3.957 12 H -0.018 1.018 13 C -0.541 4.541 14 H 0.050 0.950 15 C 0.018 3.982 16 N -0.912 5.912 17 Si 0.955 3.045 18 H -0.277 1.277 19 H -0.281 1.281 20 H -0.267 1.267 21 C 0.129 3.871 22 C -0.120 4.120 23 C -0.119 4.119 24 C -0.128 4.128 25 H 0.074 0.926 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.024 0.976 30 H 0.080 0.920 31 H 0.108 0.892 32 H 0.078 0.922 33 H 0.116 0.884 34 H 0.091 0.909 35 H 0.042 0.958 36 H 0.063 0.937 37 H 0.037 0.963 38 H 0.262 0.738 39 H 0.046 0.954 40 H 0.059 0.941 41 H 0.057 0.943 42 H 0.082 0.918 43 H 0.114 0.886 44 H 0.076 0.924 45 H 0.104 0.896 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.374 3.800 -16.392 20.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.163 4.163 3 C -0.125 4.125 4 C -0.106 4.106 5 C 0.307 3.693 6 O -0.484 6.484 7 N -0.334 5.334 8 C -0.016 4.016 9 C -0.165 4.165 10 C -0.143 4.143 11 C 0.024 3.976 12 H 0.000 1.000 13 C -0.579 4.579 14 H 0.068 0.932 15 C -0.181 4.181 16 N -0.551 5.551 17 Si 0.781 3.219 18 H -0.203 1.203 19 H -0.206 1.206 20 H -0.192 1.192 21 C 0.007 3.993 22 C -0.157 4.157 23 C -0.156 4.156 24 C -0.165 4.165 25 H 0.093 0.907 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.043 0.957 30 H 0.098 0.902 31 H 0.127 0.873 32 H 0.096 0.904 33 H 0.134 0.866 34 H 0.110 0.890 35 H 0.061 0.939 36 H 0.081 0.919 37 H 0.056 0.944 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.101 0.899 43 H 0.132 0.868 44 H 0.094 0.906 45 H 0.122 0.878 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.948 3.427 -16.328 20.520 hybrid contribution 1.064 -0.863 1.633 2.132 sum -10.884 2.564 -14.695 18.465 Atomic orbital electron populations 1.21718 0.93901 1.01909 1.02668 1.21487 0.97210 0.96808 1.00784 1.21538 0.88677 0.97503 1.04799 1.22321 0.98621 0.98525 0.91175 1.21319 0.78422 0.83921 0.85599 1.90605 1.42179 1.28026 1.87572 1.48307 1.57164 1.22595 1.05342 1.22168 0.95093 0.82098 1.02195 1.21919 0.99667 0.98799 0.96128 1.21412 0.98180 0.98298 0.96372 1.18846 0.92614 0.93226 0.92905 0.99999 1.21407 1.35376 1.01051 1.00101 0.93167 1.25686 0.95090 0.95409 1.01905 1.70003 1.37499 1.12217 1.35420 0.85657 0.78520 0.78227 0.79530 1.20266 1.20570 1.19206 1.21505 0.98253 0.95410 0.84174 1.22826 0.99780 0.98501 0.94639 1.22819 1.03984 0.93781 0.95019 1.23053 1.00638 0.94852 0.97999 0.90688 0.93006 0.92658 0.91783 0.95690 0.90180 0.87341 0.90379 0.86575 0.89044 0.93867 0.91892 0.94442 0.92881 0.93563 0.92279 0.92436 0.89916 0.86784 0.90571 0.87758 0.92113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 9.91 71.98 0.71 -1.64 16 2 C -0.13 -2.68 5.66 30.59 0.17 -2.51 16 3 C -0.09 -1.62 4.24 30.59 0.13 -1.49 16 4 C -0.10 -2.58 0.29 -52.40 -0.02 -2.60 16 5 C 0.52 19.34 5.56 87.66 0.49 19.82 16 6 O -0.60 -28.28 15.55 -3.03 -0.05 -28.33 16 7 N -0.60 -22.85 2.97 -818.88 -2.43 -25.29 16 8 C 0.11 3.08 4.92 86.36 0.42 3.51 16 9 C -0.13 -4.38 6.08 30.67 0.19 -4.19 16 10 C -0.10 -4.80 4.96 30.62 0.15 -4.64 16 11 C 0.04 2.27 2.25 -11.46 -0.03 2.24 16 12 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 16 13 C -0.54 -30.86 8.57 25.60 0.22 -30.64 16 14 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 15 C 0.02 1.03 5.30 84.66 0.45 1.48 16 16 N -0.91 -53.04 11.31 21.45 0.24 -52.79 16 17 Si 0.96 44.35 29.54 68.60 2.03 46.38 16 18 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 19 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 20 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 21 C 0.13 6.00 5.67 86.36 0.49 6.49 16 22 C -0.12 -2.82 6.77 31.12 0.21 -2.61 16 23 C -0.12 -1.93 7.73 31.12 0.24 -1.69 16 24 C -0.13 -2.66 5.79 31.12 0.18 -2.48 16 25 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 28 H 0.06 1.34 7.28 -2.39 -0.02 1.32 16 29 H 0.02 0.72 7.23 -2.39 -0.02 0.70 16 30 H 0.08 1.39 6.01 -2.39 -0.01 1.38 16 31 H 0.11 1.29 7.30 -2.39 -0.02 1.28 16 32 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.12 2.54 3.32 -2.39 -0.01 2.54 16 34 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 35 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.06 3.31 6.04 -2.39 -0.01 3.29 16 37 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 39 H 0.05 2.39 7.00 -2.39 -0.02 2.37 16 40 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 41 H 0.06 1.72 7.70 -2.39 -0.02 1.70 16 42 H 0.08 1.71 7.22 -2.39 -0.02 1.69 16 43 H 0.11 1.18 7.60 -2.38 -0.02 1.17 16 44 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.10 1.58 7.04 -2.39 -0.02 1.56 16 46 H 0.06 1.60 8.09 -2.39 -0.02 1.58 16 Total: -1.00 -70.84 343.70 4.74 -66.10 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: 0.94 Total: 14.87 kcal Atomic # 6 Polarization: -24.95 SS G_CDS: 4.02 Total: -20.94 kcal Atomic # 7 Polarization: -75.89 SS G_CDS: -2.19 Total: -78.08 kcal Atomic # 8 Polarization: -28.28 SS G_CDS: -0.05 Total: -28.33 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -70.84 4.74 -66.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597908298.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.159 kcal (2) G-P(sol) polarization free energy of solvation -70.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.62 seconds