Wall clock time and date at job start Tue Mar 31 2020 02:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50702 * 119.99932 * 2 1 4 4 C 1.52996 * 109.47175 * 124.72247 * 3 2 1 5 5 H 1.09007 * 109.49473 * 304.99674 * 4 3 2 6 6 C 1.53038 * 109.50031 * 65.06096 * 4 3 2 7 7 C 1.53044 * 109.54133 * 181.28338 * 6 4 3 8 8 C 1.53189 * 109.33584 * 298.68836 * 7 6 4 9 9 N 1.46918 * 108.77978 * 54.61868 * 8 7 6 10 10 C 1.34778 * 120.63106 * 126.41077 * 9 8 7 11 11 O 1.21284 * 120.00045 * 179.97438 * 10 9 8 12 12 C 1.50701 * 120.00100 * 359.97438 * 10 9 8 13 13 C 1.52994 * 109.47105 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.47289 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.47488 * 180.02562 * 14 13 12 16 16 C 1.50701 * 109.47303 * 179.97438 * 15 14 13 17 17 H 1.08000 * 119.99493 * 0.02562 * 16 15 14 18 18 C 1.37869 * 119.99972 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00343 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99808 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47323 * 90.00009 * 20 18 16 22 22 H 1.48502 * 109.47281 * 209.99866 * 20 18 16 23 23 H 1.48496 * 109.47128 * 329.99576 * 20 18 16 24 24 C 1.46928 * 118.74048 * 306.38620 * 9 8 7 25 25 H 1.08002 * 119.99713 * 0.27722 * 1 2 3 26 26 H 1.07999 * 120.00046 * 180.27508 * 1 2 3 27 27 H 1.08002 * 119.99708 * 179.71665 * 2 1 3 28 28 H 1.09002 * 109.47005 * 244.72313 * 3 2 1 29 29 H 1.08999 * 109.47073 * 4.72010 * 3 2 1 30 30 H 1.08995 * 109.46186 * 301.34210 * 6 4 3 31 31 H 1.08998 * 109.45726 * 61.29573 * 6 4 3 32 32 H 1.08996 * 109.49327 * 178.71983 * 7 6 4 33 33 H 1.08993 * 109.49238 * 58.65068 * 7 6 4 34 34 H 1.08998 * 109.58537 * 294.82605 * 8 7 6 35 35 H 1.08997 * 109.58400 * 174.40713 * 8 7 6 36 36 H 1.08996 * 109.47087 * 300.00138 * 12 10 9 37 37 H 1.09004 * 109.46636 * 60.00318 * 12 10 9 38 38 H 1.08996 * 109.47449 * 300.00147 * 13 12 10 39 39 H 1.08999 * 109.47556 * 60.00384 * 13 12 10 40 40 H 1.09003 * 109.46885 * 300.00689 * 14 13 12 41 41 H 1.08995 * 109.47172 * 59.99677 * 14 13 12 42 42 H 1.08996 * 109.47169 * 299.99866 * 15 14 13 43 43 H 1.09000 * 109.46729 * 59.99911 * 15 14 13 44 44 H 0.96999 * 120.00333 * 179.97438 * 19 18 16 45 45 H 1.08996 * 109.58993 * 293.82647 * 24 9 8 46 46 H 1.08997 * 109.70658 * 173.46482 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0301 1.3360 1.1856 5 1 2.4798 1.1521 2.1084 6 6 4.0972 0.2543 1.0030 7 6 5.0458 0.2632 2.2040 8 6 5.7448 1.6237 2.2883 9 7 4.7232 2.6792 2.3185 10 6 4.7193 3.6032 3.2997 11 8 3.8709 4.4698 3.3132 12 6 5.7691 3.5596 4.3800 13 6 5.5397 4.7112 5.3608 14 6 6.6059 4.6673 6.4572 15 6 6.3762 5.8186 7.4384 16 6 7.4260 5.7750 8.5188 17 1 8.1817 5.0035 8.5064 18 6 7.4216 6.7198 9.5228 19 7 6.5017 7.6595 9.5375 20 14 8.7233 6.6662 10.8615 21 1 9.8961 7.4760 10.4443 22 1 8.1622 7.2196 12.1201 23 1 9.1465 5.2603 11.0843 24 6 3.7063 2.7087 1.2584 25 1 -0.5400 0.9353 -0.0045 26 1 -0.5400 -0.9353 0.0045 27 1 1.8500 -0.9353 0.0046 28 1 2.6252 1.4004 -0.9293 29 1 1.3582 2.1318 0.0846 30 1 3.6165 -0.7209 0.9266 31 1 4.6629 0.4524 0.0926 32 1 5.7918 -0.5223 2.0841 33 1 4.4775 0.0890 3.1176 34 1 6.3854 1.7600 1.4170 35 1 6.3453 1.6703 3.1967 36 1 5.7039 2.6104 4.9118 37 1 6.7573 3.6571 3.9304 38 1 5.6052 5.6602 4.8286 39 1 4.5515 4.6142 5.8104 40 1 6.5409 3.7183 6.9894 41 1 7.5939 4.7645 6.0074 42 1 6.4410 6.7677 6.9065 43 1 5.3881 5.7208 7.8883 44 1 6.4984 8.3241 10.2440 45 1 4.1806 2.9334 0.3031 46 1 2.9613 3.4715 1.4848 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597996083.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:16 Heat of formation + Delta-G solvation = -75.850335 kcal Electronic energy + Delta-G solvation = -21405.111587 eV Core-core repulsion = 18292.725744 eV Total energy + Delta-G solvation = -3112.385843 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.30689 -38.99868 -36.64705 -36.24218 -34.63602 -33.45612 -32.42064 -31.34152 -28.05784 -27.01511 -26.17515 -23.97248 -23.25119 -21.89999 -21.45335 -20.37966 -19.79612 -18.44175 -18.00220 -16.98067 -16.92385 -16.49245 -16.20082 -15.83023 -15.39794 -15.18990 -14.80394 -14.53942 -14.45121 -14.04425 -13.93383 -13.61545 -13.56353 -13.36902 -13.28236 -12.81951 -12.59389 -12.33291 -12.22950 -12.17734 -12.14624 -12.01786 -11.71920 -11.55786 -11.38753 -11.32102 -11.25743 -11.11822 -10.71680 -10.55102 -10.21096 -9.60580 -8.18469 -6.30845 1.40404 1.40731 1.42993 1.54052 1.61809 2.02320 2.42146 3.14092 3.54235 3.77397 3.81738 3.90025 4.01721 4.08806 4.12570 4.26784 4.31975 4.40963 4.42491 4.58144 4.59805 4.65913 4.68311 4.78699 4.81516 4.85603 4.88074 4.92312 5.02012 5.06395 5.15359 5.17423 5.20149 5.31490 5.34035 5.36496 5.48838 5.55905 5.59335 5.77587 5.77860 5.87822 5.91392 6.25153 6.38929 6.87602 7.18032 7.38760 8.93872 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.037099 B = 0.002473 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.561547 B =11317.333291 C =11642.658813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C -0.086 4.086 4 C -0.088 4.088 5 H 0.053 0.947 6 C -0.111 4.111 7 C -0.134 4.134 8 C 0.097 3.903 9 N -0.612 5.612 10 C 0.508 3.492 11 O -0.592 6.592 12 C -0.126 4.126 13 C -0.095 4.095 14 C -0.094 4.094 15 C 0.018 3.982 16 C -0.540 4.540 17 H 0.067 0.933 18 C -0.009 4.009 19 N -0.939 5.939 20 Si 0.971 3.029 21 H -0.271 1.271 22 H -0.284 1.284 23 H -0.258 1.258 24 C 0.111 3.889 25 H 0.091 0.909 26 H 0.105 0.895 27 H 0.122 0.878 28 H 0.088 0.912 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.055 0.945 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.116 0.884 37 H 0.118 0.882 38 H 0.041 0.959 39 H 0.040 0.960 40 H 0.061 0.939 41 H 0.062 0.938 42 H -0.016 1.016 43 H -0.017 1.017 44 H 0.263 0.737 45 H 0.082 0.918 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.687 -21.191 -22.724 31.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.172 4.172 3 C -0.124 4.124 4 C -0.108 4.108 5 H 0.072 0.928 6 C -0.149 4.149 7 C -0.172 4.172 8 C -0.025 4.025 9 N -0.344 5.344 10 C 0.298 3.702 11 O -0.473 6.473 12 C -0.165 4.165 13 C -0.133 4.133 14 C -0.132 4.132 15 C -0.019 4.019 16 C -0.578 4.578 17 H 0.085 0.915 18 C -0.206 4.206 19 N -0.579 5.579 20 Si 0.795 3.205 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.182 1.182 24 C -0.011 4.011 25 H 0.110 0.890 26 H 0.124 0.876 27 H 0.140 0.860 28 H 0.106 0.894 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.119 0.881 33 H 0.074 0.926 34 H 0.107 0.893 35 H 0.117 0.883 36 H 0.134 0.866 37 H 0.136 0.864 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.002 0.998 43 H 0.002 0.998 44 H 0.071 0.929 45 H 0.100 0.900 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.175 -20.605 -22.634 30.892 hybrid contribution -0.071 0.757 0.941 1.210 sum -4.246 -19.848 -21.693 29.708 Atomic orbital electron populations 1.24022 0.96367 1.02224 1.01635 1.23050 0.95956 0.98737 0.99422 1.20723 0.97734 0.95612 0.98306 1.21386 0.96366 0.94561 0.98457 0.92821 1.21616 0.96069 0.98469 0.98699 1.21936 0.99717 0.96717 0.98809 1.22106 0.89726 0.86003 1.04647 1.48257 1.31030 1.29345 1.25805 1.21269 0.85749 0.80361 0.82844 1.90673 1.41236 1.38361 1.77031 1.21689 0.98747 1.01358 0.94722 1.21247 0.98600 0.97588 0.95912 1.21439 0.97827 0.98645 0.95261 1.19062 0.95095 0.93776 0.93970 1.21747 1.13546 1.12770 1.09770 0.91466 1.26120 0.98413 0.95007 1.01039 1.70136 1.36234 1.16741 1.34797 0.85361 0.78521 0.78998 0.77628 1.19677 1.20984 1.18235 1.21676 0.91047 0.97961 0.90445 0.89035 0.87632 0.86040 0.89378 0.92241 0.90419 0.90328 0.88103 0.92617 0.89316 0.88251 0.86628 0.86381 0.93964 0.94131 0.92043 0.91914 0.99763 0.99821 0.92864 0.89996 0.92022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.60 14.32 67.78 0.97 -1.63 16 2 C -0.15 -1.83 9.03 25.64 0.23 -1.60 16 3 C -0.09 -1.08 5.14 29.85 0.15 -0.92 16 4 C -0.09 -1.30 2.33 -10.72 -0.02 -1.32 16 5 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 6 C -0.11 -1.08 5.01 30.62 0.15 -0.93 16 7 C -0.13 -1.34 6.08 30.67 0.19 -1.15 16 8 C 0.10 1.21 6.34 86.36 0.55 1.76 16 9 N -0.61 -12.89 2.97 -818.93 -2.43 -15.33 16 10 C 0.51 14.99 7.70 87.66 0.67 15.67 16 11 O -0.59 -23.59 15.40 -3.04 -0.05 -23.64 16 12 C -0.13 -3.31 4.05 29.85 0.12 -3.19 16 13 C -0.10 -3.59 4.50 30.59 0.14 -3.45 16 14 C -0.09 -3.92 5.15 30.60 0.16 -3.76 16 15 C 0.02 1.01 4.97 29.85 0.15 1.16 16 16 C -0.54 -31.63 9.11 25.60 0.23 -31.40 16 17 H 0.07 3.67 7.74 -2.91 -0.02 3.65 16 18 C -0.01 -0.52 5.46 84.65 0.46 -0.06 16 19 N -0.94 -59.72 13.29 21.44 0.28 -59.43 16 20 Si 0.97 45.11 29.54 68.60 2.03 47.13 16 21 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 22 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 23 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 24 C 0.11 2.16 5.71 86.36 0.49 2.65 16 25 H 0.09 1.21 7.84 -2.91 -0.02 1.19 16 26 H 0.11 1.10 8.06 -2.91 -0.02 1.07 16 27 H 0.12 1.12 6.94 -2.91 -0.02 1.10 16 28 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.06 0.87 7.79 -2.39 -0.02 0.85 16 30 H 0.08 0.63 6.68 -2.39 -0.02 0.61 16 31 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.10 1.09 5.93 -2.39 -0.01 1.07 16 36 H 0.12 2.47 7.69 -2.39 -0.02 2.45 16 37 H 0.12 2.47 7.94 -2.39 -0.02 2.45 16 38 H 0.04 1.74 8.10 -2.39 -0.02 1.72 16 39 H 0.04 1.68 8.10 -2.39 -0.02 1.66 16 40 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 41 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 42 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 43 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 44 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 45 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.06 1.58 7.01 -2.39 -0.02 1.57 16 Total: -1.00 -76.33 365.10 5.38 -70.95 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: 0.91 Total: 8.49 kcal Atomic # 6 Polarization: -32.81 SS G_CDS: 4.65 Total: -28.17 kcal Atomic # 7 Polarization: -72.61 SS G_CDS: -2.15 Total: -74.76 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: -0.05 Total: -23.64 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.13 kcal Total: -76.33 5.38 -70.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597996083.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.904 kcal (2) G-P(sol) polarization free energy of solvation -76.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds