Wall clock time and date at job start Tue Mar 31 2020 00:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 119.99659 * 2 1 4 4 C 1.52998 * 109.46950 * 122.62634 * 3 2 1 5 5 N 1.46497 * 110.43777 * 305.12468 * 4 3 2 6 6 C 1.34784 * 119.99853 * 300.07870 * 5 4 3 7 7 O 1.21284 * 119.99884 * 354.98316 * 6 5 4 8 8 C 1.50701 * 120.00002 * 174.98011 * 6 5 4 9 9 C 1.52992 * 109.47108 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.47285 * 179.97438 * 9 8 6 11 11 C 1.53005 * 109.47283 * 179.97438 * 10 9 8 12 12 C 1.50692 * 109.46910 * 180.02562 * 11 10 9 13 13 H 1.08000 * 120.00634 * 359.97438 * 12 11 10 14 14 C 1.37880 * 120.00161 * 180.02562 * 12 11 10 15 15 N 1.31516 * 120.00186 * 179.97438 * 14 12 11 16 16 Si 1.86803 * 119.99693 * 359.97438 * 14 12 11 17 17 H 1.48493 * 109.46926 * 89.99852 * 16 14 12 18 18 H 1.48495 * 109.47063 * 210.00178 * 16 14 12 19 19 H 1.48504 * 109.46960 * 330.00058 * 16 14 12 20 20 C 1.54897 * 110.48734 * 67.66727 * 4 3 2 21 21 C 1.55240 * 102.58726 * 156.67337 * 20 4 3 22 22 C 1.54264 * 104.23430 * 322.08428 * 21 20 4 23 23 C 1.53872 * 106.60061 * 23.60948 * 22 21 20 24 24 H 1.08007 * 120.00606 * 359.97438 * 1 2 3 25 25 H 1.08006 * 119.99662 * 180.02562 * 1 2 3 26 26 H 1.07993 * 120.00590 * 180.02562 * 2 1 3 27 27 H 1.09006 * 109.47310 * 2.62968 * 3 2 1 28 28 H 1.09000 * 109.47257 * 242.62499 * 3 2 1 29 29 H 0.97000 * 120.00140 * 120.08003 * 5 4 3 30 30 H 1.08997 * 109.46910 * 59.99979 * 8 6 5 31 31 H 1.09000 * 109.46649 * 300.00222 * 8 6 5 32 32 H 1.09001 * 109.46746 * 299.99727 * 9 8 6 33 33 H 1.08997 * 109.47598 * 59.99977 * 9 8 6 34 34 H 1.09001 * 109.47079 * 299.99613 * 10 9 8 35 35 H 1.09007 * 109.46761 * 59.99609 * 10 9 8 36 36 H 1.09001 * 109.46866 * 299.99889 * 11 10 9 37 37 H 1.08996 * 109.47063 * 59.99802 * 11 10 9 38 38 H 0.97004 * 119.99581 * 179.97438 * 15 14 12 39 39 H 1.08998 * 110.75166 * 275.06924 * 20 4 3 40 40 H 1.09002 * 110.75151 * 38.43329 * 20 4 3 41 41 H 1.08999 * 110.46284 * 203.39392 * 21 20 4 42 42 H 1.08999 * 110.46303 * 80.77433 * 21 20 4 43 43 H 1.08996 * 110.03160 * 264.32900 * 22 21 20 44 44 H 1.08998 * 110.03276 * 142.89802 * 22 21 20 45 45 H 1.09004 * 110.03676 * 240.71842 * 23 22 21 46 46 H 1.08998 * 110.03426 * 119.28043 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.9919 1.3580 1.2149 5 7 2.2340 1.1325 2.4481 6 6 1.2307 1.9672 2.7847 7 8 1.0140 2.9555 2.1159 8 6 0.3781 1.6724 3.9918 9 6 -0.6796 2.7666 4.1487 10 6 -1.5456 2.4670 5.3739 11 6 -2.6029 3.5617 5.5312 12 6 -3.4555 3.2669 6.7382 13 1 -3.2629 2.3866 7.3335 14 6 -4.4822 4.1204 7.0822 15 7 -5.2266 3.8628 8.1354 16 14 -4.8160 5.6427 6.0523 17 1 -5.7848 5.3103 4.9772 18 1 -5.3816 6.7102 6.9157 19 1 -3.5466 6.1177 5.4453 20 6 4.1258 0.3118 1.0765 21 6 5.2358 0.8927 1.9933 22 6 5.1545 2.4167 1.7684 23 6 3.7280 2.7126 1.2734 24 1 -0.5401 0.9353 0.0004 25 1 -0.5400 -0.9354 0.0004 26 1 1.8500 -0.9352 -0.0004 27 1 1.3560 2.1331 0.0472 28 1 2.6543 1.3836 -0.9126 29 1 2.4543 0.3825 3.0225 30 1 1.0064 1.6435 4.8820 31 1 -0.1135 0.7082 3.8626 32 1 -0.1881 3.7310 4.2777 33 1 -1.3078 2.7952 3.2584 34 1 -2.0370 1.5027 5.2444 35 1 -0.9176 2.4382 6.2644 36 1 -2.1112 4.5258 5.6608 37 1 -3.2309 3.5910 4.6407 38 1 -5.9487 4.4636 8.3776 39 1 3.7969 -0.6638 1.4343 40 1 4.4703 0.2499 0.0442 41 1 6.2134 0.5145 1.6946 42 1 5.0341 0.6497 3.0366 43 1 5.8816 2.7223 1.0161 44 1 5.3416 2.9427 2.7045 45 1 3.7627 3.1618 0.2809 46 1 3.2226 3.3822 1.9694 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598295875.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:04 Heat of formation + Delta-G solvation = -56.374277 kcal Electronic energy + Delta-G solvation = -22065.771665 eV Core-core repulsion = 18954.230368 eV Total energy + Delta-G solvation = -3111.541298 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -40.57219 -38.06791 -35.00497 -34.71945 -33.30894 -32.50368 -30.34436 -29.22682 -29.07077 -25.93970 -25.01797 -22.39541 -21.23592 -20.47561 -19.98628 -19.80274 -19.23108 -16.92552 -16.61899 -16.36645 -15.76786 -15.48988 -15.16040 -14.50219 -14.16065 -13.99767 -13.72490 -13.52290 -13.37930 -12.71095 -12.61535 -12.30877 -12.08040 -12.01952 -11.72624 -11.69342 -11.47357 -11.36548 -11.08297 -11.07918 -10.79869 -10.72393 -10.68914 -10.49680 -9.86154 -9.69760 -9.61967 -9.53465 -9.29662 -9.09378 -9.00312 -8.47590 -5.98873 -3.96143 2.17639 2.77708 3.16434 3.36711 3.43577 3.49867 4.12528 4.29934 4.51757 4.52988 4.83126 4.88123 4.99373 5.05647 5.14321 5.24003 5.26647 5.31488 5.34317 5.37074 5.42187 5.45484 5.52619 5.60831 5.70587 5.81296 5.83314 5.86855 5.93533 6.00973 6.07704 6.14675 6.20352 6.43890 6.52153 6.54426 6.71436 6.72383 6.86332 7.02312 7.40940 7.53654 7.53781 7.86938 8.34360 8.60424 9.06339 9.64669 11.14703 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.026090 B = 0.003151 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.949199 B = 8882.636526 C = 9170.095338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.151 4.151 3 C -0.102 4.102 4 C 0.181 3.819 5 N -0.722 5.722 6 C 0.517 3.483 7 O -0.534 6.534 8 C -0.140 4.140 9 C -0.104 4.104 10 C -0.103 4.103 11 C -0.015 4.015 12 C -0.519 4.519 13 H 0.071 0.929 14 C 0.064 3.936 15 N -0.907 5.907 16 Si 0.880 3.120 17 H -0.277 1.277 18 H -0.289 1.289 19 H -0.264 1.264 20 C -0.124 4.124 21 C -0.125 4.125 22 C -0.125 4.125 23 C -0.129 4.129 24 H 0.096 0.904 25 H 0.094 0.906 26 H 0.103 0.897 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.397 0.603 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.015 0.985 37 H 0.011 0.989 38 H 0.262 0.738 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.069 0.931 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.266 -9.348 -16.683 29.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.169 4.169 3 C -0.140 4.140 4 C 0.095 3.905 5 N -0.375 5.375 6 C 0.305 3.695 7 O -0.411 6.411 8 C -0.180 4.180 9 C -0.142 4.142 10 C -0.140 4.140 11 C -0.052 4.052 12 C -0.557 4.557 13 H 0.089 0.911 14 C -0.136 4.136 15 N -0.546 5.546 16 Si 0.707 3.293 17 H -0.203 1.203 18 H -0.215 1.215 19 H -0.189 1.189 20 C -0.162 4.162 21 C -0.162 4.162 22 C -0.162 4.162 23 C -0.167 4.167 24 H 0.115 0.885 25 H 0.113 0.887 26 H 0.121 0.879 27 H 0.105 0.895 28 H 0.094 0.906 29 H 0.231 0.769 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.033 0.967 37 H 0.029 0.971 38 H 0.072 0.928 39 H 0.091 0.909 40 H 0.100 0.900 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.088 0.912 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 21.948 -8.552 -17.073 29.092 hybrid contribution -0.225 0.335 -0.112 0.419 sum 21.722 -8.218 -17.185 28.891 Atomic orbital electron populations 1.23902 0.96092 1.01878 1.00575 1.22772 0.95897 0.97863 1.00365 1.21160 0.99254 0.96832 0.96764 1.20989 0.90187 0.95054 0.84299 1.46060 1.35192 1.31658 1.24586 1.20927 0.79860 0.82335 0.86420 1.90655 1.69606 1.27127 1.53673 1.21777 0.98196 1.02283 0.95786 1.21448 0.95954 0.96969 0.99812 1.21477 0.97137 1.00099 0.95307 1.19570 0.94220 0.94523 0.96921 1.21194 1.13770 1.10322 1.10398 0.91126 1.25045 0.95744 0.97878 0.94958 1.69926 1.20223 1.38104 1.26354 0.86772 0.78967 0.83173 0.80386 1.20320 1.21465 1.18897 1.22861 0.94613 0.97805 1.00893 1.22434 0.98539 0.95545 0.99714 1.22138 0.96997 0.95958 1.01126 1.22526 0.94689 0.97088 1.02434 0.88530 0.88726 0.87876 0.89479 0.90635 0.76873 0.89326 0.89182 0.91907 0.91903 0.92940 0.92926 0.96658 0.97097 0.92835 0.90934 0.89995 0.91572 0.91563 0.91939 0.91932 0.91226 0.90102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.93 14.32 29.02 0.42 -1.51 16 2 C -0.15 -1.39 8.65 -36.02 -0.31 -1.70 16 3 C -0.10 -0.99 4.34 -27.88 -0.12 -1.11 16 4 C 0.18 1.59 0.43 -130.15 -0.06 1.54 16 5 N -0.72 -6.82 4.58 -46.06 -0.21 -7.03 16 6 C 0.52 6.68 7.08 -10.98 -0.08 6.60 16 7 O -0.53 -8.76 12.86 5.55 0.07 -8.69 16 8 C -0.14 -1.80 5.70 -27.89 -0.16 -1.96 16 9 C -0.10 -1.76 4.50 -26.74 -0.12 -1.88 16 10 C -0.10 -2.05 5.15 -26.73 -0.14 -2.19 16 11 C -0.01 -0.37 4.04 -27.88 -0.11 -0.48 16 12 C -0.52 -15.24 9.66 -34.44 -0.33 -15.57 16 13 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 14 C 0.06 1.93 5.47 -17.82 -0.10 1.84 16 15 N -0.91 -28.63 13.96 55.43 0.77 -27.85 16 16 Si 0.88 22.55 27.47 -169.99 -4.67 17.88 16 17 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 18 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 19 H -0.26 -6.58 6.54 56.52 0.37 -6.22 16 20 C -0.12 -0.78 5.37 -24.54 -0.13 -0.91 16 21 C -0.12 -0.79 6.80 -24.88 -0.17 -0.96 16 22 C -0.12 -0.96 6.80 -25.62 -0.17 -1.13 16 23 C -0.13 -1.26 5.66 -25.61 -0.14 -1.40 16 24 H 0.10 1.14 7.84 -52.48 -0.41 0.73 16 25 H 0.09 0.86 8.06 -52.48 -0.42 0.44 16 26 H 0.10 0.79 7.93 -52.49 -0.42 0.37 16 27 H 0.09 1.11 6.21 -51.93 -0.32 0.78 16 28 H 0.08 0.63 8.07 -51.93 -0.42 0.21 16 29 H 0.40 2.84 8.49 -40.82 -0.35 2.50 16 30 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.06 1.13 8.10 -51.93 -0.42 0.71 16 33 H 0.06 1.12 8.10 -51.93 -0.42 0.70 16 34 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 37 H 0.01 0.27 7.57 -51.93 -0.39 -0.13 16 38 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 39 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 40 H 0.08 0.46 8.01 -51.93 -0.42 0.05 16 41 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.07 0.66 7.84 -51.93 -0.41 0.25 16 46 H 0.08 1.02 6.38 -51.93 -0.33 0.69 16 LS Contribution 362.90 15.07 5.47 5.47 Total: -1.00 -33.07 362.90 -8.78 -41.86 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -8.49 Total: -0.79 kcal Atomic # 6 Polarization: -19.11 SS G_CDS: -1.73 Total: -20.84 kcal Atomic # 7 Polarization: -35.45 SS G_CDS: 0.56 Total: -34.89 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: 0.07 Total: -8.69 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -4.67 Total: 17.88 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.07 -8.78 -41.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598295875.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.515 kcal (2) G-P(sol) polarization free energy of solvation -33.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds