Wall clock time and date at job start Tue Mar 31 2020 00:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 119.99659 * 2 1 4 4 C 1.52998 * 109.46950 * 122.62634 * 3 2 1 5 5 N 1.46497 * 110.43777 * 305.12468 * 4 3 2 6 6 C 1.34784 * 119.99853 * 300.07870 * 5 4 3 7 7 O 1.21284 * 119.99884 * 354.98316 * 6 5 4 8 8 C 1.50701 * 120.00002 * 174.98011 * 6 5 4 9 9 C 1.52992 * 109.47108 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.47285 * 179.97438 * 9 8 6 11 11 C 1.53005 * 109.47283 * 179.97438 * 10 9 8 12 12 C 1.50692 * 109.46910 * 180.02562 * 11 10 9 13 13 H 1.08000 * 120.00634 * 359.97438 * 12 11 10 14 14 C 1.37880 * 120.00161 * 180.02562 * 12 11 10 15 15 N 1.31516 * 120.00186 * 179.97438 * 14 12 11 16 16 Si 1.86803 * 119.99693 * 359.97438 * 14 12 11 17 17 H 1.48493 * 109.46926 * 89.99852 * 16 14 12 18 18 H 1.48495 * 109.47063 * 210.00178 * 16 14 12 19 19 H 1.48504 * 109.46960 * 330.00058 * 16 14 12 20 20 C 1.54897 * 110.48734 * 67.66727 * 4 3 2 21 21 C 1.55240 * 102.58726 * 156.67337 * 20 4 3 22 22 C 1.54264 * 104.23430 * 322.08428 * 21 20 4 23 23 C 1.53872 * 106.60061 * 23.60948 * 22 21 20 24 24 H 1.08007 * 120.00606 * 359.97438 * 1 2 3 25 25 H 1.08006 * 119.99662 * 180.02562 * 1 2 3 26 26 H 1.07993 * 120.00590 * 180.02562 * 2 1 3 27 27 H 1.09006 * 109.47310 * 2.62968 * 3 2 1 28 28 H 1.09000 * 109.47257 * 242.62499 * 3 2 1 29 29 H 0.97000 * 120.00140 * 120.08003 * 5 4 3 30 30 H 1.08997 * 109.46910 * 59.99979 * 8 6 5 31 31 H 1.09000 * 109.46649 * 300.00222 * 8 6 5 32 32 H 1.09001 * 109.46746 * 299.99727 * 9 8 6 33 33 H 1.08997 * 109.47598 * 59.99977 * 9 8 6 34 34 H 1.09001 * 109.47079 * 299.99613 * 10 9 8 35 35 H 1.09007 * 109.46761 * 59.99609 * 10 9 8 36 36 H 1.09001 * 109.46866 * 299.99889 * 11 10 9 37 37 H 1.08996 * 109.47063 * 59.99802 * 11 10 9 38 38 H 0.97004 * 119.99581 * 179.97438 * 15 14 12 39 39 H 1.08998 * 110.75166 * 275.06924 * 20 4 3 40 40 H 1.09002 * 110.75151 * 38.43329 * 20 4 3 41 41 H 1.08999 * 110.46284 * 203.39392 * 21 20 4 42 42 H 1.08999 * 110.46303 * 80.77433 * 21 20 4 43 43 H 1.08996 * 110.03160 * 264.32900 * 22 21 20 44 44 H 1.08998 * 110.03276 * 142.89802 * 22 21 20 45 45 H 1.09004 * 110.03676 * 240.71842 * 23 22 21 46 46 H 1.08998 * 110.03426 * 119.28043 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.9919 1.3580 1.2149 5 7 2.2340 1.1325 2.4481 6 6 1.2307 1.9672 2.7847 7 8 1.0140 2.9555 2.1159 8 6 0.3781 1.6724 3.9918 9 6 -0.6796 2.7666 4.1487 10 6 -1.5456 2.4670 5.3739 11 6 -2.6029 3.5617 5.5312 12 6 -3.4555 3.2669 6.7382 13 1 -3.2629 2.3866 7.3335 14 6 -4.4822 4.1204 7.0822 15 7 -5.2266 3.8628 8.1354 16 14 -4.8160 5.6427 6.0523 17 1 -5.7848 5.3103 4.9772 18 1 -5.3816 6.7102 6.9157 19 1 -3.5466 6.1177 5.4453 20 6 4.1258 0.3118 1.0765 21 6 5.2358 0.8927 1.9933 22 6 5.1545 2.4167 1.7684 23 6 3.7280 2.7126 1.2734 24 1 -0.5401 0.9353 0.0004 25 1 -0.5400 -0.9354 0.0004 26 1 1.8500 -0.9352 -0.0004 27 1 1.3560 2.1331 0.0472 28 1 2.6543 1.3836 -0.9126 29 1 2.4543 0.3825 3.0225 30 1 1.0064 1.6435 4.8820 31 1 -0.1135 0.7082 3.8626 32 1 -0.1881 3.7310 4.2777 33 1 -1.3078 2.7952 3.2584 34 1 -2.0370 1.5027 5.2444 35 1 -0.9176 2.4382 6.2644 36 1 -2.1112 4.5258 5.6608 37 1 -3.2309 3.5910 4.6407 38 1 -5.9487 4.4636 8.3776 39 1 3.7969 -0.6638 1.4343 40 1 4.4703 0.2499 0.0442 41 1 6.2134 0.5145 1.6946 42 1 5.0341 0.6497 3.0366 43 1 5.8816 2.7223 1.0161 44 1 5.3416 2.9427 2.7045 45 1 3.7627 3.1618 0.2809 46 1 3.2226 3.3822 1.9694 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598295875.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:00 Heat of formation + Delta-G solvation = -75.859750 kcal Electronic energy + Delta-G solvation = -22066.616619 eV Core-core repulsion = 18954.230368 eV Total energy + Delta-G solvation = -3112.386251 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 3.79 seconds Orbital eigenvalues (eV) -41.42740 -38.95872 -36.62841 -35.46945 -34.60901 -34.14787 -31.88533 -30.18467 -29.67965 -27.57993 -25.79230 -23.97794 -21.95367 -21.79662 -21.35443 -20.53667 -20.06181 -18.85378 -17.85151 -17.17163 -16.86037 -16.35113 -16.22495 -15.88784 -15.53093 -15.19405 -14.80170 -14.54972 -14.34104 -14.13885 -13.80668 -13.68251 -13.49199 -13.26685 -12.86168 -12.77250 -12.41570 -12.33381 -12.12285 -12.04269 -11.91410 -11.77373 -11.76047 -11.55064 -11.46533 -11.35231 -11.31254 -11.25575 -10.77160 -10.50485 -10.29201 -9.84947 -8.30857 -6.33893 1.33645 1.35043 1.41992 1.48077 1.78270 2.31582 2.34903 3.04508 3.48582 3.69950 3.88165 3.96685 4.05092 4.13989 4.15529 4.28817 4.38171 4.50422 4.57165 4.64076 4.68230 4.68926 4.77343 4.79833 4.81919 4.86870 4.92676 5.02336 5.09619 5.12865 5.14376 5.15421 5.19536 5.26984 5.30615 5.34480 5.50864 5.58764 5.64577 5.67458 5.74633 5.75600 5.97183 6.28548 6.71375 6.74072 7.30972 7.42665 8.85858 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.026090 B = 0.003151 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.949199 B = 8882.636526 C = 9170.095338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.137 4.137 3 C -0.103 4.103 4 C 0.178 3.822 5 N -0.706 5.706 6 C 0.516 3.484 7 O -0.575 6.575 8 C -0.134 4.134 9 C -0.094 4.094 10 C -0.093 4.093 11 C -0.016 4.016 12 C -0.531 4.531 13 H 0.037 0.963 14 C 0.004 3.996 15 N -0.951 5.951 16 Si 0.947 3.053 17 H -0.267 1.267 18 H -0.280 1.280 19 H -0.253 1.253 20 C -0.114 4.114 21 C -0.121 4.121 22 C -0.123 4.123 23 C -0.131 4.131 24 H 0.070 0.930 25 H 0.107 0.893 26 H 0.131 0.869 27 H 0.050 0.950 28 H 0.091 0.909 29 H 0.412 0.588 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.013 0.987 37 H 0.012 0.988 38 H 0.266 0.734 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.082 0.918 42 H 0.068 0.932 43 H 0.072 0.928 44 H 0.053 0.947 45 H 0.066 0.934 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.438 -10.628 -18.085 32.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.155 4.155 3 C -0.141 4.141 4 C 0.092 3.908 5 N -0.358 5.358 6 C 0.304 3.696 7 O -0.455 6.455 8 C -0.174 4.174 9 C -0.132 4.132 10 C -0.131 4.131 11 C -0.053 4.053 12 C -0.569 4.569 13 H 0.055 0.945 14 C -0.192 4.192 15 N -0.592 5.592 16 Si 0.771 3.229 17 H -0.192 1.192 18 H -0.206 1.206 19 H -0.177 1.177 20 C -0.152 4.152 21 C -0.158 4.158 22 C -0.160 4.160 23 C -0.169 4.169 24 H 0.089 0.911 25 H 0.126 0.874 26 H 0.149 0.851 27 H 0.069 0.931 28 H 0.110 0.890 29 H 0.249 0.751 30 H 0.128 0.872 31 H 0.128 0.872 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.031 0.969 37 H 0.030 0.970 38 H 0.075 0.925 39 H 0.108 0.892 40 H 0.113 0.887 41 H 0.101 0.899 42 H 0.086 0.914 43 H 0.091 0.909 44 H 0.072 0.928 45 H 0.085 0.915 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 24.154 -9.874 -18.472 31.970 hybrid contribution -0.882 0.711 0.358 1.188 sum 23.272 -9.163 -18.114 30.881 Atomic orbital electron populations 1.23887 0.96732 1.01302 1.02408 1.22936 0.95481 0.98455 0.98644 1.21146 0.98945 0.95951 0.98030 1.21105 0.90583 0.95741 0.83369 1.45905 1.33890 1.31144 1.24878 1.20911 0.80451 0.82200 0.86067 1.90655 1.70902 1.28999 1.54938 1.21678 0.97514 1.01357 0.96846 1.21230 0.96368 0.98030 0.97540 1.21341 0.96355 0.98479 0.96937 1.19562 0.94874 0.96114 0.94762 1.21545 1.14601 1.09232 1.11509 0.94476 1.25988 0.95548 1.01465 0.96226 1.70061 1.21110 1.39739 1.28243 0.85698 0.79393 0.78976 0.78848 1.19192 1.20594 1.17713 1.22863 0.93013 0.97430 1.01884 1.22434 0.99454 0.94010 0.99929 1.22128 0.95621 0.97391 1.00904 1.22500 0.95962 0.97060 1.01414 0.91132 0.87448 0.85131 0.93132 0.89037 0.75097 0.87152 0.87240 0.93191 0.93204 0.92598 0.92570 0.96877 0.97009 0.92474 0.89151 0.88653 0.89901 0.91372 0.90938 0.92795 0.91546 0.93553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -4.08 14.32 67.78 0.97 -3.11 16 2 C -0.14 -2.24 8.65 25.65 0.22 -2.01 16 3 C -0.10 -1.87 4.34 29.85 0.13 -1.75 16 4 C 0.18 2.80 0.43 4.69 0.00 2.80 16 5 N -0.71 -11.97 4.58 -418.03 -1.91 -13.88 16 6 C 0.52 12.94 7.08 87.66 0.62 13.56 16 7 O -0.58 -19.33 12.86 -3.04 -0.04 -19.37 16 8 C -0.13 -3.22 5.70 29.85 0.17 -3.05 16 9 C -0.09 -3.14 4.50 30.59 0.14 -3.00 16 10 C -0.09 -3.70 5.15 30.60 0.16 -3.54 16 11 C -0.02 -0.78 4.04 29.85 0.12 -0.66 16 12 C -0.53 -31.76 9.66 25.60 0.25 -31.51 16 13 H 0.04 2.39 7.99 -2.91 -0.02 2.37 16 14 C 0.00 0.27 5.47 84.66 0.46 0.73 16 15 N -0.95 -61.11 13.96 21.45 0.30 -60.81 16 16 Si 0.95 46.56 27.47 68.60 1.88 48.45 16 17 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 18 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 19 H -0.25 -11.90 6.54 99.48 0.65 -11.25 16 20 C -0.11 -1.00 5.37 32.01 0.17 -0.82 16 21 C -0.12 -1.11 6.80 31.79 0.22 -0.89 16 22 C -0.12 -1.67 6.80 31.32 0.21 -1.46 16 23 C -0.13 -2.47 5.66 31.32 0.18 -2.30 16 24 H 0.07 1.75 7.84 -2.91 -0.02 1.73 16 25 H 0.11 1.80 8.06 -2.91 -0.02 1.78 16 26 H 0.13 1.45 7.93 -2.91 -0.02 1.43 16 27 H 0.05 1.33 6.21 -2.38 -0.01 1.31 16 28 H 0.09 1.36 8.07 -2.39 -0.02 1.34 16 29 H 0.41 4.56 8.49 -92.71 -0.79 3.77 16 30 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.05 1.79 8.10 -2.39 -0.02 1.77 16 33 H 0.05 1.79 8.10 -2.39 -0.02 1.77 16 34 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 36 H 0.01 0.65 7.20 -2.39 -0.02 0.63 16 37 H 0.01 0.57 7.57 -2.39 -0.02 0.55 16 38 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 39 H 0.09 0.53 8.08 -2.39 -0.02 0.51 16 40 H 0.09 0.65 8.01 -2.39 -0.02 0.63 16 41 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 43 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.07 1.25 7.84 -2.38 -0.02 1.23 16 46 H 0.05 1.21 6.38 -2.39 -0.02 1.19 16 Total: -1.00 -74.13 362.90 4.33 -69.80 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: 0.08 Total: 12.82 kcal Atomic # 6 Polarization: -41.03 SS G_CDS: 4.02 Total: -37.01 kcal Atomic # 7 Polarization: -73.08 SS G_CDS: -1.61 Total: -74.69 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.04 Total: -19.37 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 1.88 Total: 48.45 kcal Total: -74.13 4.33 -69.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598295875.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.059 kcal (2) G-P(sol) polarization free energy of solvation -74.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.79 seconds