Wall clock time and date at job start Tue Mar 31 2020 01:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47240 * 2 1 4 4 C 1.53006 * 109.47064 * 185.50245 * 3 2 1 5 5 C 1.52995 * 109.47118 * 65.49963 * 3 2 1 6 6 N 1.46501 * 109.46850 * 305.49656 * 3 2 1 7 7 C 1.46500 * 119.99558 * 109.67854 * 6 3 2 8 8 C 1.50695 * 109.47305 * 263.93470 * 7 6 3 9 9 H 1.08005 * 120.00165 * 2.92811 * 8 7 6 10 10 C 1.37883 * 119.99943 * 182.92410 * 8 7 6 11 11 N 1.31509 * 120.00194 * 0.02562 * 10 8 7 12 12 Si 1.86807 * 119.99767 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.47016 * 0.02562 * 12 10 8 14 14 H 1.48496 * 109.47010 * 120.00419 * 12 10 8 15 15 H 1.48498 * 109.46910 * 240.00250 * 12 10 8 16 16 C 1.34771 * 120.00456 * 289.67969 * 6 3 2 17 17 O 1.21282 * 120.00186 * 183.92818 * 16 6 3 18 18 C 1.50698 * 119.99864 * 3.91825 * 16 6 3 19 19 C 1.53889 * 113.58705 * 155.27831 * 18 16 6 20 20 C 1.53253 * 86.88633 * 89.61152 * 19 18 16 21 21 C 1.52460 * 128.58897 * 165.11282 * 20 19 18 22 22 C 1.52594 * 128.58411 * 245.01944 * 20 19 18 23 23 C 1.53257 * 87.69124 * 25.08121 * 20 19 18 24 24 H 1.08994 * 109.47256 * 203.22255 * 1 2 3 25 25 H 1.09003 * 109.47118 * 323.22572 * 1 2 3 26 26 H 1.09002 * 109.47216 * 83.21909 * 1 2 3 27 27 H 1.08999 * 109.47088 * 240.00280 * 2 1 3 28 28 H 1.08994 * 109.47366 * 120.00080 * 2 1 3 29 29 H 1.08989 * 109.46836 * 176.22161 * 4 3 2 30 30 H 1.08998 * 109.46784 * 296.21927 * 4 3 2 31 31 H 1.09001 * 109.47108 * 56.21900 * 4 3 2 32 32 H 1.08997 * 109.47225 * 302.42610 * 5 3 2 33 33 H 1.09001 * 109.47135 * 62.42728 * 5 3 2 34 34 H 1.09005 * 109.47202 * 182.42328 * 5 3 2 35 35 H 1.09004 * 109.47188 * 23.93862 * 7 6 3 36 36 H 1.09003 * 109.47319 * 143.93222 * 7 6 3 37 37 H 0.97004 * 120.00108 * 179.97438 * 11 10 8 38 38 H 1.09000 * 112.83378 * 24.16693 * 18 16 6 39 39 H 1.08999 * 113.64787 * 335.11502 * 19 18 16 40 40 H 1.09005 * 113.73328 * 204.12027 * 19 18 16 41 41 H 1.09002 * 117.51159 * 225.04849 * 21 20 19 42 42 H 1.08999 * 117.51332 * 10.11091 * 21 20 19 43 43 H 1.08998 * 117.53753 * 134.97941 * 22 20 19 44 44 H 1.09004 * 117.49755 * 349.85243 * 22 20 19 45 45 H 1.09002 * 113.64686 * 89.41222 * 23 20 19 46 46 H 1.08995 * 113.65160 * 220.41775 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5638 1.4447 -0.1383 5 6 1.6461 2.1228 1.3126 6 7 1.4466 2.1702 -1.1245 7 6 0.4452 3.2105 -0.8771 8 6 -0.9352 2.6242 -1.0247 9 1 -1.0553 1.5709 -1.2308 10 6 -2.0448 3.4326 -0.8964 11 7 -1.8986 4.7153 -0.6459 12 14 -3.7560 2.7056 -1.0787 13 1 -3.6487 1.2506 -1.3555 14 1 -4.5191 2.9151 0.1779 15 1 -4.4602 3.3733 -2.2027 16 6 1.8219 1.8827 -2.3866 17 8 1.3845 2.5328 -3.3124 18 6 2.7854 0.7537 -2.6475 19 6 2.6655 0.1560 -4.0605 20 6 3.7007 1.1977 -4.4983 21 6 4.5210 1.2418 -5.7827 22 6 3.5268 2.3631 -5.4680 23 6 4.1942 1.2263 -3.0476 24 1 -0.3633 -0.9443 0.4052 25 1 -0.3633 0.8232 0.6152 26 1 -0.3634 0.1213 -1.0205 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.9210 2.4722 -0.2058 30 1 4.0083 0.9620 0.7320 31 1 3.8476 0.9014 -1.0397 32 1 0.5633 2.0830 1.4317 33 1 2.1225 1.6071 2.1463 34 1 1.9717 3.1629 1.2948 35 1 0.5683 3.6004 0.1334 36 1 0.5755 4.0188 -1.5967 37 1 -2.6792 5.2840 -0.5561 38 1 2.7837 0.0047 -1.8556 39 1 1.6842 0.2978 -4.5134 40 1 3.0214 -0.8717 -4.1338 41 1 5.5830 1.4709 -5.6944 42 1 4.2554 0.5408 -6.5740 43 1 3.9349 3.3296 -5.1726 44 1 2.6070 2.3990 -6.0518 45 1 4.9761 0.4966 -2.8374 46 1 4.4384 2.2259 -2.6884 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598834969.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:13 Heat of formation + Delta-G solvation = 37.054043 kcal Electronic energy + Delta-G solvation = -24147.563855 eV Core-core repulsion = 21040.073914 eV Total energy + Delta-G solvation = -3107.489942 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.65311 -38.32845 -36.41410 -33.69144 -32.78284 -31.59337 -29.99188 -28.42046 -26.46365 -25.44704 -24.05758 -22.96195 -22.24822 -22.08662 -20.27561 -18.71994 -17.22985 -16.62722 -15.74694 -15.53659 -15.08025 -14.87114 -14.46536 -14.19983 -13.99462 -13.72973 -13.31797 -12.80609 -12.46318 -12.30278 -12.10459 -12.01157 -11.77090 -11.65472 -11.56600 -11.24550 -11.16256 -11.04076 -10.85134 -10.67245 -10.51647 -10.41282 -10.31801 -10.05744 -10.00377 -9.92044 -9.62280 -9.35038 -9.16754 -8.62054 -8.34353 -7.46385 -5.96528 -3.98331 3.32332 3.40500 3.42753 3.51562 3.91554 4.08811 4.50015 4.57442 4.79560 4.96168 5.05741 5.07486 5.16837 5.29342 5.36694 5.38802 5.48657 5.64850 5.73613 5.77800 5.78938 5.85610 5.91919 5.97602 6.06716 6.09697 6.17903 6.19367 6.20073 6.26771 6.38531 6.41423 6.43243 6.47112 6.52660 6.62957 6.66299 6.81749 7.21064 7.22612 7.58703 7.73963 8.03705 8.34756 8.60407 9.03558 9.29913 9.65928 11.11713 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.017376 B = 0.006663 C = 0.005651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.059690 B = 4201.454313 C = 4953.486557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.136 4.136 3 C 0.167 3.833 4 C -0.186 4.186 5 C -0.149 4.149 6 N -0.586 5.586 7 C 0.240 3.760 8 C -0.521 4.521 9 H 0.073 0.927 10 C 0.059 3.941 11 N -0.897 5.897 12 Si 0.889 3.111 13 H -0.273 1.273 14 H -0.285 1.285 15 H -0.285 1.285 16 C 0.528 3.472 17 O -0.532 6.532 18 C -0.147 4.147 19 C -0.086 4.086 20 C -0.147 4.147 21 C -0.180 4.180 22 C -0.128 4.128 23 C -0.084 4.084 24 H 0.034 0.966 25 H 0.080 0.920 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.039 0.961 36 H 0.036 0.964 37 H 0.260 0.740 38 H 0.109 0.891 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.096 0.904 45 H 0.088 0.912 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.855 -9.713 -0.399 16.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.174 4.174 3 C 0.081 3.919 4 C -0.243 4.243 5 C -0.207 4.207 6 N -0.318 5.318 7 C 0.121 3.879 8 C -0.560 4.560 9 H 0.090 0.910 10 C -0.142 4.142 11 N -0.537 5.537 12 Si 0.718 3.282 13 H -0.198 1.198 14 H -0.212 1.212 15 H -0.211 1.211 16 C 0.314 3.686 17 O -0.408 6.408 18 C -0.168 4.168 19 C -0.123 4.123 20 C -0.147 4.147 21 C -0.216 4.216 22 C -0.164 4.164 23 C -0.122 4.122 24 H 0.053 0.947 25 H 0.099 0.901 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.057 0.943 36 H 0.054 0.946 37 H 0.069 0.931 38 H 0.127 0.873 39 H 0.094 0.906 40 H 0.102 0.898 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.114 0.886 45 H 0.106 0.894 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 12.492 -9.164 -0.835 15.516 hybrid contribution -1.052 -0.293 0.020 1.092 sum 11.440 -9.458 -0.815 14.866 Atomic orbital electron populations 1.22122 0.94239 1.00951 1.03609 1.22198 0.98066 0.95971 1.01181 1.20303 0.91702 0.91776 0.88087 1.22882 0.95549 1.02744 1.03151 1.22105 1.03733 1.00226 0.94591 1.48261 1.41287 1.38346 1.03899 1.19356 0.85103 0.85944 0.97485 1.21855 0.90470 0.96088 1.47572 0.90956 1.24926 0.98995 0.94716 0.95563 1.69950 1.29827 1.04238 1.49664 0.86576 0.84794 0.79331 0.77544 1.19804 1.21169 1.21119 1.19548 0.81605 0.84309 0.83143 1.90648 1.56046 1.51275 1.42848 1.22977 0.96126 0.98800 0.98854 1.22362 0.99057 0.96541 0.94378 1.22046 1.00496 1.01494 0.90670 1.22854 0.96905 1.03017 0.98869 1.22585 1.00154 0.92810 1.00894 1.22455 0.94824 1.01558 0.93321 0.94738 0.90090 0.91742 0.91716 0.92064 0.92421 0.92210 0.90010 0.90007 0.92777 0.92181 0.94269 0.94559 0.93056 0.87314 0.90576 0.89830 0.89327 0.89233 0.89173 0.88592 0.89388 0.91233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 8.05 37.16 0.30 -2.37 16 2 C -0.14 -2.01 4.80 -26.73 -0.13 -2.14 16 3 C 0.17 2.71 0.70 -131.82 -0.09 2.61 16 4 C -0.19 -2.46 7.74 37.16 0.29 -2.17 16 5 C -0.15 -2.41 6.96 37.16 0.26 -2.15 16 6 N -0.59 -12.06 1.95 -160.18 -0.31 -12.38 16 7 C 0.24 6.09 4.56 -5.20 -0.02 6.06 16 8 C -0.52 -14.12 7.70 -34.44 -0.27 -14.39 16 9 H 0.07 1.93 4.47 -52.48 -0.23 1.70 16 10 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 11 N -0.90 -26.51 13.29 55.43 0.74 -25.78 16 12 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 13 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 14 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 15 H -0.28 -7.10 7.11 56.52 0.40 -6.69 16 16 C 0.53 10.93 6.49 -10.99 -0.07 10.86 16 17 O -0.53 -13.26 14.84 5.56 0.08 -13.17 16 18 C -0.15 -2.27 2.40 -90.85 -0.22 -2.49 16 19 C -0.09 -1.26 7.45 -26.14 -0.19 -1.46 16 20 C -0.15 -2.12 2.47 -154.73 -0.38 -2.50 16 21 C -0.18 -2.19 10.53 -26.94 -0.28 -2.47 16 22 C -0.13 -1.92 9.86 -26.87 -0.26 -2.18 16 23 C -0.08 -1.12 5.75 -26.14 -0.15 -1.27 16 24 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.08 1.58 4.74 -51.93 -0.25 1.33 16 26 H 0.06 1.31 6.12 -51.93 -0.32 0.99 16 27 H 0.06 0.91 5.00 -51.93 -0.26 0.65 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.81 8.14 -51.94 -0.42 0.39 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 1.01 2.74 -51.93 -0.14 0.87 16 32 H 0.08 1.51 5.50 -51.93 -0.29 1.22 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 1.01 7.32 -51.93 -0.38 0.63 16 35 H 0.04 0.99 5.37 -51.93 -0.28 0.72 16 36 H 0.04 1.07 7.56 -51.93 -0.39 0.68 16 37 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.11 1.50 3.24 -51.93 -0.17 1.33 16 39 H 0.08 1.30 7.86 -51.93 -0.41 0.89 16 40 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 42 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 44 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 45 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.07 1.00 7.99 -51.93 -0.41 0.58 16 LS Contribution 337.62 15.07 5.09 5.09 Total: -1.00 -31.06 337.62 -8.07 -39.13 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -7.31 Total: 4.80 kcal Atomic # 6 Polarization: -13.16 SS G_CDS: -1.33 Total: -14.49 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: 0.42 Total: -38.15 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: 0.08 Total: -13.17 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.06 -8.07 -39.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598834969.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.181 kcal (2) G-P(sol) polarization free energy of solvation -31.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds