Wall clock time and date at job start Tue Mar 31 2020 01:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47240 * 2 1 4 4 C 1.53006 * 109.47064 * 185.50245 * 3 2 1 5 5 C 1.52995 * 109.47118 * 65.49963 * 3 2 1 6 6 N 1.46501 * 109.46850 * 305.49656 * 3 2 1 7 7 C 1.46500 * 119.99558 * 109.67854 * 6 3 2 8 8 C 1.50695 * 109.47305 * 263.93470 * 7 6 3 9 9 H 1.08005 * 120.00165 * 2.92811 * 8 7 6 10 10 C 1.37883 * 119.99943 * 182.92410 * 8 7 6 11 11 N 1.31509 * 120.00194 * 0.02562 * 10 8 7 12 12 Si 1.86807 * 119.99767 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.47016 * 0.02562 * 12 10 8 14 14 H 1.48496 * 109.47010 * 120.00419 * 12 10 8 15 15 H 1.48498 * 109.46910 * 240.00250 * 12 10 8 16 16 C 1.34771 * 120.00456 * 289.67969 * 6 3 2 17 17 O 1.21282 * 120.00186 * 183.92818 * 16 6 3 18 18 C 1.50698 * 119.99864 * 3.91825 * 16 6 3 19 19 C 1.53889 * 113.58705 * 155.27831 * 18 16 6 20 20 C 1.53253 * 86.88633 * 89.61152 * 19 18 16 21 21 C 1.52460 * 128.58897 * 165.11282 * 20 19 18 22 22 C 1.52594 * 128.58411 * 245.01944 * 20 19 18 23 23 C 1.53257 * 87.69124 * 25.08121 * 20 19 18 24 24 H 1.08994 * 109.47256 * 203.22255 * 1 2 3 25 25 H 1.09003 * 109.47118 * 323.22572 * 1 2 3 26 26 H 1.09002 * 109.47216 * 83.21909 * 1 2 3 27 27 H 1.08999 * 109.47088 * 240.00280 * 2 1 3 28 28 H 1.08994 * 109.47366 * 120.00080 * 2 1 3 29 29 H 1.08989 * 109.46836 * 176.22161 * 4 3 2 30 30 H 1.08998 * 109.46784 * 296.21927 * 4 3 2 31 31 H 1.09001 * 109.47108 * 56.21900 * 4 3 2 32 32 H 1.08997 * 109.47225 * 302.42610 * 5 3 2 33 33 H 1.09001 * 109.47135 * 62.42728 * 5 3 2 34 34 H 1.09005 * 109.47202 * 182.42328 * 5 3 2 35 35 H 1.09004 * 109.47188 * 23.93862 * 7 6 3 36 36 H 1.09003 * 109.47319 * 143.93222 * 7 6 3 37 37 H 0.97004 * 120.00108 * 179.97438 * 11 10 8 38 38 H 1.09000 * 112.83378 * 24.16693 * 18 16 6 39 39 H 1.08999 * 113.64787 * 335.11502 * 19 18 16 40 40 H 1.09005 * 113.73328 * 204.12027 * 19 18 16 41 41 H 1.09002 * 117.51159 * 225.04849 * 21 20 19 42 42 H 1.08999 * 117.51332 * 10.11091 * 21 20 19 43 43 H 1.08998 * 117.53753 * 134.97941 * 22 20 19 44 44 H 1.09004 * 117.49755 * 349.85243 * 22 20 19 45 45 H 1.09002 * 113.64686 * 89.41222 * 23 20 19 46 46 H 1.08995 * 113.65160 * 220.41775 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5638 1.4447 -0.1383 5 6 1.6461 2.1228 1.3126 6 7 1.4466 2.1702 -1.1245 7 6 0.4452 3.2105 -0.8771 8 6 -0.9352 2.6242 -1.0247 9 1 -1.0553 1.5709 -1.2308 10 6 -2.0448 3.4326 -0.8964 11 7 -1.8986 4.7153 -0.6459 12 14 -3.7560 2.7056 -1.0787 13 1 -3.6487 1.2506 -1.3555 14 1 -4.5191 2.9151 0.1779 15 1 -4.4602 3.3733 -2.2027 16 6 1.8219 1.8827 -2.3866 17 8 1.3845 2.5328 -3.3124 18 6 2.7854 0.7537 -2.6475 19 6 2.6655 0.1560 -4.0605 20 6 3.7007 1.1977 -4.4983 21 6 4.5210 1.2418 -5.7827 22 6 3.5268 2.3631 -5.4680 23 6 4.1942 1.2263 -3.0476 24 1 -0.3633 -0.9443 0.4052 25 1 -0.3633 0.8232 0.6152 26 1 -0.3634 0.1213 -1.0205 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.9210 2.4722 -0.2058 30 1 4.0083 0.9620 0.7320 31 1 3.8476 0.9014 -1.0397 32 1 0.5633 2.0830 1.4317 33 1 2.1225 1.6071 2.1463 34 1 1.9717 3.1629 1.2948 35 1 0.5683 3.6004 0.1334 36 1 0.5755 4.0188 -1.5967 37 1 -2.6792 5.2840 -0.5561 38 1 2.7837 0.0047 -1.8556 39 1 1.6842 0.2978 -4.5134 40 1 3.0214 -0.8717 -4.1338 41 1 5.5830 1.4709 -5.6944 42 1 4.2554 0.5408 -6.5740 43 1 3.9349 3.3296 -5.1726 44 1 2.6070 2.3990 -6.0518 45 1 4.9761 0.4966 -2.8374 46 1 4.4384 2.2259 -2.6884 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598834969.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:07 Heat of formation + Delta-G solvation = 19.403150 kcal Electronic energy + Delta-G solvation = -24148.329256 eV Core-core repulsion = 21040.073914 eV Total energy + Delta-G solvation = -3108.255342 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 4.22 seconds Orbital eigenvalues (eV) -42.02438 -39.61544 -37.99279 -35.31168 -34.41974 -33.26625 -31.37957 -30.01160 -28.03684 -26.62377 -25.58633 -24.29582 -24.00194 -23.18863 -21.68354 -20.04349 -18.77334 -18.41632 -17.21220 -17.09388 -16.39418 -16.24974 -16.11044 -15.71727 -15.40844 -15.18566 -14.71195 -14.28673 -14.05721 -13.80313 -13.50894 -13.28741 -13.10891 -12.96791 -12.91488 -12.88623 -12.72343 -12.51238 -12.32885 -12.26799 -12.00370 -11.90680 -11.85052 -11.67713 -11.21090 -11.16884 -11.08876 -10.81307 -10.57938 -10.48329 -10.18590 -9.22386 -8.14238 -6.23626 1.33144 1.35925 1.46473 1.94075 2.34830 2.49906 2.95579 3.15358 3.48883 3.64702 3.71338 3.85279 3.85773 4.04866 4.10144 4.13068 4.26498 4.43493 4.61977 4.72053 4.77068 4.80799 4.81492 4.85805 4.87251 4.88631 4.93845 5.01576 5.03234 5.13510 5.17625 5.19781 5.24561 5.26844 5.30794 5.32096 5.37656 5.41383 5.46422 5.50944 5.77263 5.81824 6.04049 6.21196 6.84530 7.01092 7.40290 7.69560 8.93125 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.017376 B = 0.006663 C = 0.005651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.059690 B = 4201.454313 C = 4953.486557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.130 4.130 3 C 0.155 3.845 4 C -0.179 4.179 5 C -0.147 4.147 6 N -0.589 5.589 7 C 0.258 3.742 8 C -0.521 4.521 9 H 0.076 0.924 10 C 0.002 3.998 11 N -0.935 5.935 12 Si 0.952 3.048 13 H -0.265 1.265 14 H -0.272 1.272 15 H -0.289 1.289 16 C 0.515 3.485 17 O -0.590 6.590 18 C -0.142 4.142 19 C -0.084 4.084 20 C -0.163 4.163 21 C -0.140 4.140 22 C -0.164 4.164 23 C -0.069 4.069 24 H 0.059 0.941 25 H 0.054 0.946 26 H 0.027 0.973 27 H 0.079 0.921 28 H 0.102 0.898 29 H 0.043 0.957 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.051 0.949 33 H 0.095 0.905 34 H 0.041 0.959 35 H 0.034 0.966 36 H -0.021 1.021 37 H 0.261 0.739 38 H 0.137 0.863 39 H 0.039 0.961 40 H 0.126 0.874 41 H 0.112 0.888 42 H 0.104 0.896 43 H 0.078 0.922 44 H 0.070 0.930 45 H 0.136 0.864 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.357 -13.564 0.621 20.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.167 4.167 3 C 0.071 3.929 4 C -0.236 4.236 5 C -0.204 4.204 6 N -0.320 5.320 7 C 0.137 3.863 8 C -0.559 4.559 9 H 0.093 0.907 10 C -0.195 4.195 11 N -0.577 5.577 12 Si 0.778 3.222 13 H -0.189 1.189 14 H -0.198 1.198 15 H -0.216 1.216 16 C 0.304 3.696 17 O -0.471 6.471 18 C -0.163 4.163 19 C -0.122 4.122 20 C -0.163 4.163 21 C -0.176 4.176 22 C -0.201 4.201 23 C -0.107 4.107 24 H 0.078 0.922 25 H 0.073 0.927 26 H 0.046 0.954 27 H 0.097 0.903 28 H 0.120 0.880 29 H 0.062 0.938 30 H 0.116 0.884 31 H 0.113 0.887 32 H 0.070 0.930 33 H 0.114 0.886 34 H 0.060 0.940 35 H 0.052 0.948 36 H -0.003 1.003 37 H 0.070 0.930 38 H 0.154 0.846 39 H 0.058 0.942 40 H 0.144 0.856 41 H 0.130 0.870 42 H 0.122 0.878 43 H 0.097 0.903 44 H 0.089 0.911 45 H 0.154 0.846 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 15.021 -13.054 0.218 19.902 hybrid contribution -1.841 0.951 -0.290 2.093 sum 13.180 -12.102 -0.072 17.894 Atomic orbital electron populations 1.22001 0.96702 1.01216 1.00751 1.22193 0.95726 0.94990 1.03810 1.20764 0.93855 0.92176 0.86086 1.22835 0.92532 1.02669 1.05551 1.22076 1.02071 0.99903 0.96353 1.48297 1.40325 1.37588 1.05789 1.18782 0.86296 0.86055 0.95203 1.22162 0.91350 0.96203 1.46223 0.90659 1.25780 1.03036 0.95094 0.95598 1.70083 1.30844 1.05580 1.51169 0.85582 0.80143 0.78788 0.77659 1.18904 1.19779 1.21580 1.20611 0.81795 0.85017 0.82207 1.90620 1.58330 1.53568 1.44553 1.22912 0.96019 0.97053 1.00294 1.22475 0.97590 0.98794 0.93311 1.22191 1.01277 1.00627 0.92238 1.22916 0.97175 1.00152 0.97402 1.22522 1.00857 0.93686 1.03066 1.22540 0.94224 1.02080 0.91815 0.92197 0.92718 0.95417 0.90258 0.87974 0.93814 0.88425 0.88747 0.93046 0.88610 0.94009 0.94789 1.00271 0.93047 0.84585 0.94187 0.85632 0.86975 0.87804 0.90342 0.91135 0.84645 0.92652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.04 8.05 71.98 0.58 -4.47 16 2 C -0.13 -3.37 4.80 30.60 0.15 -3.22 16 3 C 0.16 4.75 0.70 3.61 0.00 4.75 16 4 C -0.18 -4.05 7.74 71.98 0.56 -3.49 16 5 C -0.15 -4.60 6.96 71.98 0.50 -4.10 16 6 N -0.59 -24.96 1.95 -779.08 -1.52 -26.48 16 7 C 0.26 13.99 4.56 85.63 0.39 14.39 16 8 C -0.52 -29.69 7.70 25.60 0.20 -29.49 16 9 H 0.08 4.19 4.47 -2.91 -0.01 4.18 16 10 C 0.00 0.13 5.46 84.66 0.46 0.60 16 11 N -0.94 -58.16 13.29 21.45 0.28 -57.87 16 12 Si 0.95 46.24 29.54 68.60 2.03 48.27 16 13 H -0.26 -12.36 7.11 99.48 0.71 -11.65 16 14 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 15 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 16 C 0.51 21.92 6.49 87.66 0.57 22.49 16 17 O -0.59 -31.57 14.84 -3.04 -0.05 -31.61 16 18 C -0.14 -4.09 2.40 -10.94 -0.03 -4.12 16 19 C -0.08 -2.31 7.45 30.98 0.23 -2.08 16 20 C -0.16 -4.42 2.47 -52.33 -0.13 -4.55 16 21 C -0.14 -3.04 10.53 30.46 0.32 -2.71 16 22 C -0.16 -5.11 9.86 30.50 0.30 -4.81 16 23 C -0.07 -1.62 5.75 30.98 0.18 -1.44 16 24 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 25 H 0.05 2.13 4.74 -2.39 -0.01 2.12 16 26 H 0.03 1.11 6.12 -2.39 -0.01 1.09 16 27 H 0.08 1.85 5.00 -2.39 -0.01 1.84 16 28 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.04 1.12 8.14 -2.39 -0.02 1.11 16 30 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.09 1.89 2.74 -2.39 -0.01 1.88 16 32 H 0.05 1.93 5.50 -2.39 -0.01 1.91 16 33 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.04 1.43 7.32 -2.38 -0.02 1.41 16 35 H 0.03 1.86 5.37 -2.38 -0.01 1.85 16 36 H -0.02 -1.35 7.56 -2.39 -0.02 -1.37 16 37 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 38 H 0.14 3.13 3.24 -2.39 -0.01 3.12 16 39 H 0.04 1.38 7.86 -2.39 -0.02 1.36 16 40 H 0.13 2.39 8.14 -2.38 -0.02 2.37 16 41 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 44 H 0.07 2.48 8.14 -2.38 -0.02 2.46 16 45 H 0.14 1.98 8.14 -2.39 -0.02 1.96 16 46 H 0.05 1.48 7.99 -2.39 -0.02 1.46 16 Total: -1.00 -76.03 337.62 6.00 -70.03 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: 0.97 Total: 19.93 kcal Atomic # 6 Polarization: -26.54 SS G_CDS: 4.28 Total: -22.26 kcal Atomic # 7 Polarization: -83.12 SS G_CDS: -1.23 Total: -84.35 kcal Atomic # 8 Polarization: -31.57 SS G_CDS: -0.05 Total: -31.61 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -76.03 6.00 -70.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598834969.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.430 kcal (2) G-P(sol) polarization free energy of solvation -76.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.22 seconds