Wall clock time and date at job start Tue Mar 31 2020 02:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47383 * 2 1 4 4 C 1.50705 * 109.46992 * 239.99827 * 2 1 3 5 5 H 1.07990 * 120.00104 * 241.24235 * 4 2 1 6 6 C 1.37881 * 119.99604 * 61.24303 * 4 2 1 7 7 N 1.31509 * 119.99827 * 194.11499 * 6 4 2 8 8 Si 1.86798 * 120.00314 * 14.11180 * 6 4 2 9 9 H 1.48499 * 109.47195 * 84.53194 * 8 6 4 10 10 H 1.48491 * 109.47274 * 204.53596 * 8 6 4 11 11 H 1.48507 * 109.47062 * 324.53517 * 8 6 4 12 12 C 1.52997 * 109.47285 * 120.00413 * 2 1 3 13 13 N 1.46904 * 109.46882 * 299.99527 * 12 2 1 14 14 C 1.46904 * 111.00390 * 179.97438 * 13 12 2 15 15 H 1.09005 * 112.88146 * 333.14639 * 14 13 12 16 16 C 1.53607 * 113.66591 * 104.50086 * 14 13 12 17 17 H 1.09006 * 116.61452 * 21.44332 * 16 14 13 18 18 C 1.53932 * 114.88704 * 243.75945 * 16 14 13 19 19 C 1.53728 * 104.99514 * 281.13307 * 18 16 14 20 20 O 1.42941 * 107.97716 * 2.04855 * 19 18 16 21 21 C 1.43509 * 109.37555 * 340.31752 * 20 19 18 22 22 H 1.08995 * 114.90109 * 259.21485 * 21 20 19 23 23 C 1.53110 * 113.20106 * 122.91982 * 21 20 19 24 24 C 1.52898 * 121.00969 * 153.15713 * 23 21 20 25 25 C 1.53948 * 86.77299 * 209.51009 * 24 23 21 26 26 C 1.52878 * 121.06698 * 44.73477 * 23 21 20 27 27 H 1.09001 * 109.46924 * 309.51880 * 1 2 3 28 28 H 1.09000 * 109.47357 * 69.51221 * 1 2 3 29 29 H 1.08998 * 109.47263 * 189.51890 * 1 2 3 30 30 H 1.09002 * 109.47345 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.46800 * 300.00191 * 3 2 1 32 32 H 1.09005 * 109.47141 * 59.99947 * 3 2 1 33 33 H 0.97001 * 120.00700 * 180.02562 * 7 6 4 34 34 H 1.08999 * 109.47522 * 180.02562 * 12 2 1 35 35 H 1.09001 * 109.47392 * 59.99081 * 12 2 1 36 36 H 1.00907 * 110.99745 * 56.04866 * 13 12 2 37 37 H 1.09002 * 110.33768 * 162.25145 * 18 16 14 38 38 H 1.09001 * 110.33087 * 40.01419 * 18 16 14 39 39 H 1.08994 * 109.76783 * 242.41249 * 19 18 16 40 40 H 1.08998 * 109.76782 * 121.67685 * 19 18 16 41 41 H 1.09001 * 113.66225 * 323.98007 * 24 23 21 42 42 H 1.09003 * 113.66700 * 95.04042 * 24 23 21 43 43 H 1.09006 * 113.58278 * 270.11536 * 25 24 23 44 44 H 1.09004 * 113.65085 * 139.33842 * 25 24 23 45 45 H 1.08995 * 113.66281 * 264.91569 * 26 23 21 46 46 H 1.09001 * 113.66218 * 35.87861 * 26 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6365 -1.6001 -1.1315 6 6 1.7204 -0.2246 -2.4826 7 7 1.9114 -0.9751 -3.5455 8 14 1.0265 1.4996 -2.6693 9 1 2.1411 2.4799 -2.7119 10 1 0.2441 1.5847 -3.9285 11 1 0.1426 1.8051 -1.5157 12 6 2.0400 -0.7213 1.2492 13 7 1.5504 -0.0288 2.4486 14 6 2.0209 -0.6953 3.6703 15 1 2.2162 -1.7578 3.5252 16 6 3.1617 0.0502 4.3791 17 1 3.2641 1.1122 4.1557 18 6 4.4959 -0.7151 4.4404 19 6 4.3217 -1.7272 5.5843 20 8 2.9940 -1.5905 6.0959 21 6 2.4665 -0.3113 5.7154 22 1 2.4940 0.4475 6.4973 23 6 1.1594 -0.4090 4.9241 24 6 0.1396 0.7301 4.9437 25 6 -0.9381 -0.3473 4.7251 26 6 0.0386 -1.3505 5.3653 27 1 -0.3633 0.6539 0.7928 28 1 -0.3634 0.3597 -0.9626 29 1 -0.3634 -1.0135 0.1699 30 1 3.1300 1.4424 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6924 -0.6333 -4.4264 34 1 3.1300 -0.7209 1.2494 35 1 1.6766 -1.7490 1.2492 36 1 0.5438 0.0413 2.4402 37 1 5.3153 -0.0310 4.6613 38 1 4.6782 -1.2345 3.4995 39 1 5.0441 -1.5193 6.3736 40 1 4.4690 -2.7391 5.2069 41 1 0.0653 1.2341 5.9073 42 1 0.2414 1.4229 4.1084 43 1 -1.1451 -0.5501 3.6743 44 1 -1.8432 -0.1856 5.3107 45 1 0.0596 -2.3195 4.8667 46 1 -0.0632 -1.4326 6.4474 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601281413.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:52 Heat of formation + Delta-G solvation = 15.705934 kcal Electronic energy + Delta-G solvation = -23561.964565 eV Core-core repulsion = 20453.548900 eV Total energy + Delta-G solvation = -3108.415665 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.38531 -37.86425 -36.91437 -34.17368 -32.31334 -31.10811 -30.55918 -26.20332 -25.78118 -25.54189 -24.87181 -24.41105 -22.75755 -21.80617 -20.20712 -18.87843 -17.92324 -16.72531 -16.26783 -15.93333 -15.57255 -15.16270 -14.93068 -14.53975 -14.28717 -13.88259 -13.30729 -12.97757 -12.70312 -12.57435 -12.45845 -12.31732 -12.03119 -11.97670 -11.85059 -11.60059 -11.42037 -11.26104 -11.03779 -10.57584 -10.56885 -10.26429 -10.22043 -10.04117 -9.99432 -9.86293 -9.68685 -9.32666 -8.95094 -8.53618 -8.36055 -7.89634 -6.07851 -4.03442 3.32634 3.41706 3.45656 3.58669 4.18115 4.39407 4.44378 4.57842 4.68325 4.73844 4.78414 4.94781 5.04283 5.12836 5.25088 5.26658 5.37101 5.48053 5.61206 5.69212 5.71051 5.77339 5.79384 5.90739 5.94990 6.01850 6.03084 6.08784 6.15510 6.22709 6.31463 6.35926 6.50440 6.54881 6.63369 6.67337 6.84662 6.92576 7.01458 7.03742 7.36549 7.55283 7.58769 7.81243 7.95424 8.55426 8.96931 9.58383 11.05584 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.023300 B = 0.005088 C = 0.004598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.428979 B = 5501.585372 C = 6087.803828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.041 3.959 3 C -0.134 4.134 4 C -0.512 4.512 5 H 0.070 0.930 6 C 0.073 3.927 7 N -0.897 5.897 8 Si 0.888 3.112 9 H -0.288 1.288 10 H -0.309 1.309 11 H -0.248 1.248 12 C 0.085 3.915 13 N -0.675 5.675 14 C 0.104 3.896 15 H 0.072 0.928 16 C -0.117 4.117 17 H 0.115 0.885 18 C -0.149 4.149 19 C 0.053 3.947 20 O -0.364 6.364 21 C 0.063 3.937 22 H 0.088 0.912 23 C -0.105 4.105 24 C -0.110 4.110 25 C -0.142 4.142 26 C -0.119 4.119 27 H 0.026 0.974 28 H 0.053 0.947 29 H 0.038 0.962 30 H 0.044 0.956 31 H 0.029 0.971 32 H 0.043 0.957 33 H 0.263 0.737 34 H 0.062 0.938 35 H 0.021 0.979 36 H 0.339 0.661 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.055 0.945 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.066 0.934 45 H 0.065 0.935 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.626 2.502 19.297 19.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.040 3.960 3 C -0.191 4.191 4 C -0.550 4.550 5 H 0.088 0.912 6 C -0.129 4.129 7 N -0.535 5.535 8 Si 0.721 3.279 9 H -0.215 1.215 10 H -0.238 1.238 11 H -0.174 1.174 12 C -0.043 4.043 13 N -0.308 5.308 14 C -0.007 4.007 15 H 0.090 0.910 16 C -0.137 4.137 17 H 0.133 0.867 18 C -0.187 4.187 19 C -0.023 4.023 20 O -0.283 6.283 21 C 0.005 3.995 22 H 0.106 0.894 23 C -0.106 4.106 24 C -0.148 4.148 25 C -0.180 4.180 26 C -0.156 4.156 27 H 0.045 0.955 28 H 0.072 0.928 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.048 0.952 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.039 0.961 36 H 0.160 0.840 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.073 0.927 40 H 0.095 0.905 41 H 0.100 0.900 42 H 0.101 0.899 43 H 0.099 0.901 44 H 0.085 0.915 45 H 0.084 0.916 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.231 2.766 19.202 19.402 hybrid contribution -0.517 0.191 -0.473 0.726 sum -0.747 2.957 18.730 18.976 Atomic orbital electron populations 1.22294 0.98647 0.99077 1.00076 1.18458 0.91762 0.92572 0.93226 1.22156 1.00350 0.98140 0.98435 1.20862 1.33538 1.12055 0.88549 0.91166 1.24983 0.94758 0.97322 0.95828 1.69964 1.48825 1.35965 0.98698 0.87251 0.79342 0.85589 0.75687 1.21549 1.23789 1.17422 1.21996 0.99360 0.94440 0.88551 1.60708 1.16225 1.52918 1.00905 1.22844 0.93501 0.96090 0.88285 0.91030 1.23907 0.92808 1.01312 0.95631 0.86737 1.22688 0.98205 0.98249 0.99561 1.23039 0.84449 0.99806 0.95019 1.88291 1.28861 1.34878 1.76240 1.23746 0.95364 0.85695 0.94655 0.89409 1.23248 0.92103 0.98755 0.96522 1.22529 0.93859 0.95917 1.02483 1.22885 0.96974 0.96886 1.01243 1.22595 0.94936 0.97524 1.00547 0.95493 0.92784 0.94242 0.93681 0.95234 0.93827 0.92762 0.91917 0.96052 0.84045 0.90736 0.90128 0.92667 0.90506 0.90032 0.89870 0.90142 0.91527 0.91618 0.89999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 7.24 37.16 0.27 -2.77 16 2 C 0.04 0.92 0.57 -155.66 -0.09 0.83 16 3 C -0.13 -2.90 7.54 37.16 0.28 -2.62 16 4 C -0.51 -14.05 8.62 -34.44 -0.30 -14.34 16 5 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16 6 C 0.07 2.08 5.32 -17.82 -0.09 1.98 16 7 N -0.90 -27.37 13.96 55.43 0.77 -26.60 16 8 Si 0.89 22.03 22.79 -169.99 -3.87 18.15 16 9 H -0.29 -7.14 7.10 56.52 0.40 -6.74 16 10 H -0.31 -7.80 7.11 56.52 0.40 -7.40 16 11 H -0.25 -5.69 4.65 56.52 0.26 -5.43 16 12 C 0.08 1.65 4.44 -3.82 -0.02 1.63 16 13 N -0.68 -10.73 5.31 -105.39 -0.56 -11.29 16 14 C 0.10 1.45 3.40 -66.45 -0.23 1.22 16 15 H 0.07 1.11 7.83 -51.93 -0.41 0.71 16 16 C -0.12 -1.46 4.75 -88.81 -0.42 -1.89 16 17 H 0.11 1.45 8.14 -51.93 -0.42 1.03 16 18 C -0.15 -1.69 6.55 -25.87 -0.17 -1.86 16 19 C 0.05 0.59 7.71 37.54 0.29 0.88 16 20 O -0.36 -4.77 10.84 -35.23 -0.38 -5.15 16 21 C 0.06 0.76 5.32 -25.66 -0.14 0.62 16 22 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 23 C -0.11 -1.27 0.96 -153.63 -0.15 -1.42 16 24 C -0.11 -1.19 7.27 -26.29 -0.19 -1.38 16 25 C -0.14 -1.52 7.83 -25.75 -0.20 -1.72 16 26 C -0.12 -1.36 7.77 -26.30 -0.20 -1.57 16 27 H 0.03 0.49 7.06 -51.93 -0.37 0.12 16 28 H 0.05 1.23 4.30 -51.93 -0.22 1.00 16 29 H 0.04 0.81 8.12 -51.93 -0.42 0.38 16 30 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.03 0.67 2.26 -51.93 -0.12 0.56 16 32 H 0.04 0.84 7.60 -51.93 -0.39 0.45 16 33 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 34 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 35 H 0.02 0.43 8.13 -51.93 -0.42 0.01 16 36 H 0.34 5.28 5.01 -39.29 -0.20 5.09 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.08 0.97 7.37 -51.93 -0.38 0.59 16 43 H 0.08 0.93 7.42 -51.93 -0.39 0.54 16 44 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 336.11 15.07 5.07 5.07 Total: -1.00 -29.30 336.11 -8.42 -37.72 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -8.08 Total: 4.51 kcal Atomic # 6 Polarization: -21.05 SS G_CDS: -1.36 Total: -22.40 kcal Atomic # 7 Polarization: -38.11 SS G_CDS: 0.21 Total: -37.89 kcal Atomic # 8 Polarization: -4.77 SS G_CDS: -0.38 Total: -5.15 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -3.87 Total: 18.15 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.30 -8.42 -37.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601281413.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.428 kcal (2) G-P(sol) polarization free energy of solvation -29.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds