Wall clock time and date at job start Tue Mar 31 2020 01:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47227 * 2 1 4 4 C 1.53000 * 109.47169 * 239.99932 * 2 1 3 5 5 C 1.50702 * 109.46972 * 60.00251 * 4 2 1 6 6 H 1.07998 * 119.99912 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00058 * 180.02562 * 5 4 2 8 8 N 1.31510 * 120.00270 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00019 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47439 * 59.99498 * 9 7 5 11 11 H 1.48505 * 109.47408 * 179.97438 * 9 7 5 12 12 H 1.48510 * 109.47035 * 299.99499 * 9 7 5 13 13 C 1.53001 * 109.47098 * 120.00307 * 2 1 3 14 14 N 1.46501 * 109.47269 * 299.99540 * 13 2 1 15 15 C 1.34774 * 120.00206 * 179.97438 * 14 13 2 16 16 O 1.21288 * 119.99961 * 0.02562 * 15 14 13 17 17 C 1.50697 * 120.00000 * 180.02562 * 15 14 13 18 18 C 1.51821 * 108.64279 * 304.06581 * 17 15 14 19 19 C 1.53029 * 110.74849 * 172.37809 * 18 17 15 20 20 C 1.51376 * 108.61350 * 85.76052 * 19 18 17 21 21 C 1.29520 * 120.35839 * 288.11740 * 20 19 18 22 22 C 1.51368 * 120.36383 * 359.97438 * 21 20 19 23 23 C 1.51850 * 108.65243 * 179.97438 * 17 15 14 24 24 H 1.08996 * 109.46941 * 299.99565 * 1 2 3 25 25 H 1.08996 * 109.47154 * 59.99614 * 1 2 3 26 26 H 1.09002 * 109.46843 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47286 * 180.02562 * 3 2 1 28 28 H 1.08996 * 109.47369 * 300.00255 * 3 2 1 29 29 H 1.09005 * 109.46823 * 60.00102 * 3 2 1 30 30 H 1.08997 * 109.47626 * 179.97438 * 4 2 1 31 31 H 1.09003 * 109.47608 * 300.00342 * 4 2 1 32 32 H 0.97004 * 120.00250 * 180.02562 * 8 7 5 33 33 H 1.09003 * 109.46937 * 179.97438 * 13 2 1 34 34 H 1.09002 * 109.47438 * 60.00163 * 13 2 1 35 35 H 0.97003 * 119.99759 * 0.02562 * 14 13 2 36 36 H 1.09007 * 108.60570 * 61.98646 * 17 15 14 37 37 H 1.09006 * 109.20142 * 52.06364 * 18 17 15 38 38 H 1.08997 * 109.23929 * 292.72018 * 18 17 15 39 39 H 1.08996 * 109.61401 * 326.01850 * 19 18 17 40 40 H 1.09007 * 109.61034 * 205.49429 * 19 18 17 41 41 H 1.08000 * 119.81730 * 108.10025 * 20 19 18 42 42 H 1.07998 * 119.81818 * 179.97438 * 21 20 19 43 43 H 1.08999 * 109.61256 * 191.63869 * 22 21 20 44 44 H 1.09011 * 109.60970 * 311.98156 * 22 21 20 45 45 H 1.08999 * 109.22084 * 67.27230 * 23 17 15 46 46 H 1.09001 * 109.21979 * 307.93229 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9165 0.8671 -2.3806 7 6 1.8703 -0.4821 -3.7319 8 7 2.6264 -1.5514 -3.8527 9 14 1.2471 0.3981 -5.2572 10 1 1.7420 1.7982 -5.2577 11 1 1.7422 -0.3018 -6.4698 12 1 -0.2380 0.3980 -5.2567 13 6 2.0400 -0.7213 1.2492 14 7 1.5518 -0.0307 2.4454 15 6 1.8769 -0.4915 3.6695 16 8 2.5742 -1.4777 3.7807 17 6 1.3742 0.2185 4.9000 18 6 1.8057 1.6725 4.8315 19 6 1.1635 2.4823 5.9601 20 6 2.0287 2.3589 7.1961 21 6 2.0720 1.2454 7.8564 22 6 1.2576 0.0536 7.4008 23 6 1.8896 -0.5124 6.1271 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6767 1.9562 0.8900 30 1 3.1300 -0.7209 -1.2495 31 1 1.6767 -1.7490 -1.2493 32 1 2.8607 -1.8828 -4.7337 33 1 3.1300 -0.7217 1.2490 34 1 1.6767 -1.7490 1.2492 35 1 0.9938 0.7578 2.3565 36 1 0.2849 0.1794 4.9034 37 1 1.5028 2.0916 3.8719 38 1 2.8904 1.7299 4.9210 39 1 0.1678 2.0916 6.1700 40 1 1.0938 3.5294 5.6653 41 1 2.6132 3.2038 7.5290 42 1 2.6926 1.1669 8.7367 43 1 1.2583 -0.7091 8.1795 44 1 0.2337 0.3667 7.1963 45 1 2.9723 -0.3997 6.1836 46 1 1.6436 -1.5710 6.0439 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602153057.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:50 Heat of formation + Delta-G solvation = -76.008515 kcal Electronic energy + Delta-G solvation = -22338.595037 eV Core-core repulsion = 19226.202334 eV Total energy + Delta-G solvation = -3112.392702 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.35889 -39.24644 -38.32594 -35.29221 -34.15670 -33.35719 -32.63363 -29.15000 -28.02230 -27.95772 -26.45378 -24.95250 -24.60265 -22.37774 -20.92536 -19.82930 -18.84411 -18.38704 -18.13628 -17.27225 -16.76711 -16.42447 -16.21020 -15.63473 -15.13967 -15.02620 -14.72324 -14.40613 -14.28025 -14.01623 -13.93793 -13.81169 -13.54332 -13.12073 -12.82983 -12.75395 -12.60430 -12.57498 -12.32657 -12.22540 -12.11487 -12.00463 -11.72601 -11.53595 -11.48704 -11.19701 -11.11225 -10.89295 -10.67125 -10.50803 -10.05887 -9.84127 -8.13845 -6.22074 1.42764 1.44949 1.48132 1.52146 1.67209 2.24989 2.45488 3.20522 3.64352 3.72628 3.86569 3.99004 4.07905 4.15959 4.22753 4.24737 4.31571 4.49083 4.55195 4.65153 4.69252 4.71503 4.72974 4.81501 4.93327 4.96476 4.97339 5.08668 5.12469 5.13473 5.21121 5.26998 5.34584 5.40348 5.44077 5.49004 5.50366 5.54147 5.58116 5.80431 5.86378 5.89792 6.10996 6.30082 6.61510 6.93212 7.29901 7.45918 8.98603 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.038721 B = 0.003209 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.939799 B = 8723.644843 C = 9108.696096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.065 4.065 3 C -0.121 4.121 4 C 0.040 3.960 5 C -0.514 4.514 6 H 0.074 0.926 7 C -0.006 4.006 8 N -0.940 5.940 9 Si 0.959 3.041 10 H -0.266 1.266 11 H -0.292 1.292 12 H -0.266 1.266 13 C 0.141 3.859 14 N -0.708 5.708 15 C 0.504 3.496 16 O -0.593 6.593 17 C -0.092 4.092 18 C -0.104 4.104 19 C -0.086 4.086 20 C -0.164 4.164 21 C -0.167 4.167 22 C -0.086 4.086 23 C -0.092 4.092 24 H 0.072 0.928 25 H 0.056 0.944 26 H 0.035 0.965 27 H 0.035 0.965 28 H 0.056 0.944 29 H 0.072 0.928 30 H -0.016 1.016 31 H -0.016 1.016 32 H 0.260 0.740 33 H 0.042 0.958 34 H 0.043 0.957 35 H 0.413 0.587 36 H 0.119 0.881 37 H 0.083 0.917 38 H 0.055 0.945 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.113 0.887 42 H 0.110 0.890 43 H 0.075 0.925 44 H 0.086 0.914 45 H 0.049 0.951 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.523 10.678 22.054 25.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.065 4.065 3 C -0.178 4.178 4 C 0.003 3.997 5 C -0.552 4.552 6 H 0.092 0.908 7 C -0.203 4.203 8 N -0.581 5.581 9 Si 0.784 3.216 10 H -0.191 1.191 11 H -0.218 1.218 12 H -0.190 1.190 13 C 0.016 3.984 14 N -0.361 5.361 15 C 0.292 3.708 16 O -0.474 6.474 17 C -0.114 4.114 18 C -0.142 4.142 19 C -0.123 4.123 20 C -0.182 4.182 21 C -0.185 4.185 22 C -0.123 4.123 23 C -0.130 4.130 24 H 0.090 0.910 25 H 0.075 0.925 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.002 0.998 31 H 0.002 0.998 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.252 0.748 36 H 0.137 0.863 37 H 0.101 0.899 38 H 0.073 0.927 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.131 0.869 42 H 0.128 0.872 43 H 0.094 0.906 44 H 0.104 0.896 45 H 0.067 0.933 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.961 9.880 21.982 24.827 hybrid contribution 0.280 -0.138 -1.344 1.380 sum -5.681 9.742 20.638 23.518 Atomic orbital electron populations 1.21692 0.93443 1.00945 1.01761 1.20709 0.96807 0.96339 0.92672 1.21690 0.99818 0.94550 1.01757 1.18967 0.94155 0.94152 0.92476 1.21573 1.30488 1.12143 0.91033 0.90789 1.25966 0.95651 0.95847 1.02790 1.70120 1.38796 1.25030 1.24161 0.85590 0.79001 0.78762 0.78231 1.19065 1.21785 1.19047 1.21186 0.97569 0.95351 0.84278 1.46029 1.53129 1.32091 1.04818 1.21548 0.79443 0.84023 0.85821 1.90675 1.40233 1.28927 1.87554 1.21067 1.03298 0.96037 0.90949 1.21301 1.01056 0.91596 1.00252 1.20822 0.98526 1.00944 0.92052 1.22740 1.00210 0.98186 0.97062 1.22680 1.00524 0.95123 1.00197 1.20801 0.99135 0.96317 0.96056 1.21040 1.00214 0.98938 0.92838 0.90965 0.92492 0.94553 0.94614 0.92489 0.90962 0.99797 0.99759 0.93179 0.94005 0.93891 0.74823 0.86330 0.89868 0.92658 0.89665 0.89607 0.86888 0.87183 0.90620 0.89605 0.93251 0.92358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.98 8.05 71.98 0.58 -3.40 16 2 C -0.06 -2.43 0.54 -52.18 -0.03 -2.46 16 3 C -0.12 -3.98 8.05 71.98 0.58 -3.40 16 4 C 0.04 2.05 4.04 29.85 0.12 2.17 16 5 C -0.51 -27.50 7.65 25.60 0.20 -27.30 16 6 H 0.07 3.66 5.68 -2.91 -0.02 3.65 16 7 C -0.01 -0.32 5.46 84.65 0.46 0.14 16 8 N -0.94 -57.46 13.29 21.45 0.28 -57.17 16 9 Si 0.96 43.41 29.54 68.60 2.03 45.43 16 10 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 11 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 12 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 13 C 0.14 5.06 4.56 86.38 0.39 5.46 16 14 N -0.71 -19.10 4.76 -463.05 -2.20 -21.30 16 15 C 0.50 14.34 7.14 87.66 0.63 14.97 16 16 O -0.59 -22.88 15.76 -3.06 -0.05 -22.93 16 17 C -0.09 -1.74 2.06 -12.31 -0.03 -1.76 16 18 C -0.10 -1.58 4.87 30.22 0.15 -1.43 16 19 C -0.09 -0.97 5.62 30.07 0.17 -0.80 16 20 C -0.16 -2.16 9.34 27.38 0.26 -1.90 16 21 C -0.17 -2.36 9.34 27.37 0.26 -2.10 16 22 C -0.09 -1.22 5.60 30.07 0.17 -1.05 16 23 C -0.09 -1.86 4.31 30.23 0.13 -1.73 16 24 H 0.07 1.74 6.86 -2.39 -0.02 1.72 16 25 H 0.06 2.00 6.62 -2.39 -0.02 1.99 16 26 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.06 2.00 6.62 -2.39 -0.02 1.99 16 29 H 0.07 1.74 6.86 -2.38 -0.02 1.72 16 30 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 31 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 32 H 0.26 15.10 8.31 -92.71 -0.77 14.32 16 33 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.41 8.37 5.17 -92.71 -0.48 7.89 16 36 H 0.12 1.65 7.89 -2.38 -0.02 1.64 16 37 H 0.08 1.06 6.99 -2.38 -0.02 1.04 16 38 H 0.05 1.03 7.86 -2.39 -0.02 1.01 16 39 H 0.09 0.80 6.68 -2.39 -0.02 0.78 16 40 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 41 H 0.11 1.30 8.06 -2.91 -0.02 1.28 16 42 H 0.11 1.41 8.06 -2.91 -0.02 1.39 16 43 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.09 0.99 6.70 -2.38 -0.02 0.97 16 45 H 0.05 1.18 7.86 -2.39 -0.02 1.16 16 46 H 0.06 1.36 7.77 -2.39 -0.02 1.34 16 Total: -1.00 -69.67 350.40 4.55 -65.12 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: 0.46 Total: 15.45 kcal Atomic # 6 Polarization: -28.63 SS G_CDS: 4.03 Total: -24.60 kcal Atomic # 7 Polarization: -76.56 SS G_CDS: -1.92 Total: -78.48 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -0.05 Total: -22.93 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Total: -69.67 4.55 -65.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602153057.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.889 kcal (2) G-P(sol) polarization free energy of solvation -69.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds