Wall clock time and date at job start Tue Mar 31 2020 02:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 109.47068 * 2 1 4 4 H 1.08994 * 109.47137 * 305.55568 * 3 2 1 5 5 C 1.50694 * 109.47101 * 185.55233 * 3 2 1 6 6 H 1.08003 * 120.00267 * 239.99762 * 5 3 2 7 7 C 1.37882 * 119.99832 * 60.00412 * 5 3 2 8 8 N 1.31511 * 119.99945 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 120.00005 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.46997 * 89.99797 * 9 7 5 11 11 H 1.48494 * 109.46927 * 209.99603 * 9 7 5 12 12 H 1.48497 * 109.47280 * 329.99931 * 9 7 5 13 13 N 1.46907 * 109.47136 * 65.55612 * 3 2 1 14 14 C 1.46899 * 110.99700 * 259.13281 * 13 3 2 15 15 H 1.08994 * 112.81930 * 28.91300 * 14 13 3 16 16 C 1.53823 * 113.57013 * 257.84709 * 14 13 3 17 17 H 1.09001 * 116.30068 * 150.46621 * 16 14 13 18 18 C 1.54449 * 112.96530 * 13.85884 * 16 14 13 19 19 C 1.54432 * 104.15704 * 266.46386 * 18 16 14 20 20 O 1.44360 * 104.81926 * 24.32012 * 19 18 16 21 21 C 1.45816 * 105.62121 * 319.42233 * 20 19 18 22 22 H 1.09002 * 115.37150 * 271.22861 * 21 20 19 23 23 C 1.52930 * 113.65783 * 132.79046 * 21 20 19 24 24 C 1.53624 * 115.05158 * 36.95833 * 23 21 20 25 25 C 1.55061 * 103.99380 * 106.58755 * 24 23 21 26 26 C 1.54954 * 102.82702 * 37.39502 * 25 24 23 27 27 C 1.53223 * 115.29939 * 162.73206 * 23 21 20 28 28 H 1.09001 * 109.47412 * 174.63425 * 1 2 3 29 29 H 1.09000 * 109.47816 * 294.63184 * 1 2 3 30 30 H 1.09002 * 109.47318 * 54.63209 * 1 2 3 31 31 H 1.08993 * 109.47394 * 239.99864 * 2 1 3 32 32 H 1.09002 * 109.46844 * 119.99529 * 2 1 3 33 33 H 0.97001 * 119.99725 * 180.02562 * 8 7 5 34 34 H 1.00898 * 110.99952 * 135.17718 * 13 3 2 35 35 H 1.09001 * 110.48895 * 25.13515 * 18 16 14 36 36 H 1.09002 * 110.49246 * 147.79418 * 18 16 14 37 37 H 1.09000 * 110.37006 * 143.15295 * 19 18 16 38 38 H 1.09005 * 110.37250 * 265.37179 * 19 18 16 39 39 H 1.08993 * 110.52830 * 225.21758 * 24 23 21 40 40 H 1.08999 * 110.52107 * 347.96683 * 24 23 21 41 41 H 1.08999 * 110.73718 * 279.06194 * 25 24 23 42 42 H 1.08994 * 110.73654 * 155.73036 * 25 24 23 43 43 H 1.08996 * 110.47910 * 203.69456 * 26 25 24 44 44 H 1.09002 * 110.48022 * 81.07072 * 26 25 24 45 45 H 1.08997 * 110.08649 * 349.37464 * 27 23 21 46 46 H 1.08995 * 110.09175 * 110.95836 * 27 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5977 1.9843 -0.8360 5 6 3.5406 1.4448 -0.1375 6 1 4.1530 1.8869 0.6345 7 6 4.1319 0.8825 -1.2489 8 7 3.3862 0.3438 -2.1888 9 14 5.9921 0.8859 -1.4197 10 1 6.5476 -0.3476 -0.8071 11 1 6.3569 0.9316 -2.8584 12 1 6.5504 2.0761 -0.7293 13 7 1.6628 2.0953 1.2609 14 6 0.4865 2.9558 1.0769 15 1 -0.1709 2.6083 0.2800 16 6 0.8281 4.4527 0.9838 17 1 0.1556 5.0651 0.3829 18 6 2.3339 4.7146 0.7616 19 6 2.8968 4.9136 2.1858 20 8 1.9733 4.2161 3.0487 21 6 0.6456 4.5112 2.5231 22 1 0.1746 5.4098 2.9217 23 6 -0.2463 3.2771 2.3805 24 6 -0.0872 2.2278 3.4912 25 6 -1.3756 2.3819 4.3401 26 6 -2.4597 2.6691 3.2708 27 6 -1.7443 3.5649 2.2358 28 1 -0.3634 -1.0231 -0.0961 29 1 -0.3635 0.4283 0.9341 30 1 -0.3634 0.5948 -0.8380 31 1 1.8933 -0.5138 -0.8899 32 1 1.8932 -0.5138 0.8901 33 1 3.8022 -0.0521 -2.9705 34 1 2.4367 2.6176 1.6433 35 1 2.8038 3.8560 0.2819 36 1 2.4807 5.6144 0.1640 37 1 3.8927 4.4775 2.2645 38 1 2.9268 5.9738 2.4373 39 1 -0.0278 1.2263 3.0652 40 1 0.7954 2.4406 4.0944 41 1 -1.2842 3.2194 5.0317 42 1 -1.5972 1.4593 4.8763 43 1 -3.3028 3.1981 3.7150 44 1 -2.7926 1.7409 2.8063 45 1 -1.9457 4.6151 2.4468 46 1 -2.0782 3.3140 1.2291 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602609337.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:27 Heat of formation + Delta-G solvation = -43.296313 kcal Electronic energy + Delta-G solvation = -24306.223960 eV Core-core repulsion = 21195.249766 eV Total energy + Delta-G solvation = -3110.974195 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.43061 -38.14594 -37.50698 -34.97358 -33.62917 -31.93312 -31.49506 -29.43558 -28.33921 -27.10158 -25.16706 -24.08378 -23.53456 -21.79032 -21.02999 -20.74875 -19.57843 -18.26781 -17.49730 -16.96444 -16.63854 -16.31315 -16.01949 -15.59997 -15.32123 -14.93719 -14.33326 -14.27251 -14.00437 -13.87280 -13.59434 -13.35200 -13.19782 -13.02936 -12.77160 -12.64161 -12.59742 -12.14801 -11.96650 -11.88670 -11.86393 -11.70542 -11.68295 -11.48340 -11.35436 -11.28387 -11.08407 -10.77513 -10.74628 -10.46103 -10.25063 -8.79739 -8.09363 -6.23893 1.39036 1.41094 1.49542 2.40742 2.73788 3.16048 3.44304 3.50989 3.70265 3.92286 3.99062 4.12235 4.16060 4.29931 4.36178 4.46186 4.52345 4.63117 4.65323 4.70834 4.75791 4.77677 4.82170 4.86940 4.91250 4.97863 4.98689 5.04094 5.09798 5.18733 5.22548 5.29925 5.34350 5.37411 5.45671 5.52605 5.57508 5.63362 5.67299 5.73850 5.77282 5.98194 6.02126 6.32485 6.61203 6.93039 7.18360 7.46452 8.93496 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.020210 B = 0.006561 C = 0.005524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.086166 B = 4266.810222 C = 5067.858109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.101 4.101 3 C 0.232 3.768 4 H -0.026 1.026 5 C -0.535 4.535 6 H 0.051 0.949 7 C 0.019 3.981 8 N -0.912 5.912 9 Si 0.951 3.049 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.268 1.268 13 N -0.661 5.661 14 C 0.087 3.913 15 H 0.062 0.938 16 C -0.173 4.173 17 H 0.116 0.884 18 C -0.165 4.165 19 C 0.050 3.950 20 O -0.375 6.375 21 C 0.068 3.932 22 H 0.108 0.892 23 C -0.066 4.066 24 C -0.088 4.088 25 C -0.122 4.122 26 C -0.116 4.116 27 C -0.095 4.095 28 H 0.042 0.958 29 H 0.055 0.945 30 H 0.030 0.970 31 H 0.058 0.942 32 H 0.023 0.977 33 H 0.261 0.739 34 H 0.341 0.659 35 H 0.067 0.933 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.052 0.948 40 H 0.050 0.950 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.083 0.917 44 H 0.060 0.940 45 H 0.083 0.917 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.412 9.385 9.068 16.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.140 4.140 3 C 0.123 3.877 4 H -0.008 1.008 5 C -0.574 4.574 6 H 0.069 0.931 7 C -0.181 4.181 8 N -0.551 5.551 9 Si 0.777 3.223 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.192 1.192 13 N -0.293 5.293 14 C -0.025 4.025 15 H 0.080 0.920 16 C -0.194 4.194 17 H 0.135 0.865 18 C -0.203 4.203 19 C -0.026 4.026 20 O -0.294 6.294 21 C 0.011 3.989 22 H 0.126 0.874 23 C -0.067 4.067 24 C -0.126 4.126 25 C -0.160 4.160 26 C -0.154 4.154 27 C -0.133 4.133 28 H 0.061 0.939 29 H 0.074 0.926 30 H 0.049 0.951 31 H 0.076 0.924 32 H 0.042 0.958 33 H 0.070 0.930 34 H 0.164 0.836 35 H 0.086 0.914 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.101 0.899 44 H 0.079 0.921 45 H 0.102 0.898 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.666 8.613 9.304 15.944 hybrid contribution 1.763 0.477 -1.348 2.270 sum -7.903 9.090 7.956 14.436 Atomic orbital electron populations 1.21631 0.96852 0.99630 1.00188 1.21387 0.94009 0.99150 0.99459 1.18818 0.92646 0.91014 0.85184 1.00789 1.21693 0.92985 1.37969 1.04752 0.93089 1.25622 1.02011 0.94886 0.95533 1.70019 1.36279 1.39091 1.09757 0.85667 0.81013 0.78554 0.77060 1.20483 1.20989 1.19245 1.60454 1.08136 1.33065 1.27686 1.22655 0.93714 0.89903 0.96246 0.91960 1.24795 0.96594 1.00104 0.97875 0.86548 1.23032 0.95850 1.03031 0.98418 1.23448 0.93749 0.97517 0.87914 1.89232 1.15806 1.71849 1.52503 1.24373 0.85095 0.97465 0.91946 0.87407 1.22134 0.94635 0.94548 0.95356 1.21840 0.97279 0.98017 0.95441 1.22555 0.94612 1.01371 0.97437 1.22356 0.97754 0.99457 0.95825 1.21834 0.90684 1.00894 0.99863 0.93896 0.92557 0.95052 0.92398 0.95837 0.93009 0.83628 0.91445 0.89882 0.89848 0.90322 0.92954 0.93134 0.91201 0.91625 0.89874 0.92148 0.89818 0.91653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.21 8.73 71.98 0.63 -4.58 16 2 C -0.10 -5.05 5.45 30.59 0.17 -4.88 16 3 C 0.23 11.68 1.46 44.17 0.06 11.74 16 4 H -0.03 -1.43 7.51 -2.39 -0.02 -1.45 16 5 C -0.54 -29.20 7.55 25.60 0.19 -29.00 16 6 H 0.05 2.77 7.41 -2.91 -0.02 2.75 16 7 C 0.02 1.05 5.29 84.66 0.45 1.50 16 8 N -0.91 -52.46 11.29 21.45 0.24 -52.22 16 9 Si 0.95 43.61 29.54 68.60 2.03 45.64 16 10 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 12 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 13 N -0.66 -28.18 4.86 -471.95 -2.29 -30.48 16 14 C 0.09 3.08 2.44 45.18 0.11 3.19 16 15 H 0.06 2.39 6.38 -2.39 -0.02 2.37 16 16 C -0.17 -5.27 4.92 -9.30 -0.05 -5.31 16 17 H 0.12 3.06 8.14 -2.39 -0.02 3.04 16 18 C -0.17 -5.40 6.10 31.57 0.19 -5.20 16 19 C 0.05 1.48 6.98 72.47 0.51 1.99 16 20 O -0.37 -12.29 8.92 -148.98 -1.33 -13.62 16 21 C 0.07 1.91 4.83 31.30 0.15 2.06 16 22 H 0.11 2.46 8.03 -2.39 -0.02 2.44 16 23 C -0.07 -1.88 1.03 -51.93 -0.05 -1.93 16 24 C -0.09 -2.68 5.46 31.51 0.17 -2.51 16 25 C -0.12 -2.80 6.91 31.97 0.22 -2.58 16 26 C -0.12 -2.35 6.84 31.75 0.22 -2.14 16 27 C -0.09 -2.11 6.18 31.16 0.19 -1.92 16 28 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.06 2.20 6.79 -2.39 -0.02 2.18 16 30 H 0.03 1.29 7.99 -2.39 -0.02 1.27 16 31 H 0.06 3.23 5.94 -2.39 -0.01 3.22 16 32 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 34 H 0.34 14.94 3.82 -89.70 -0.34 14.59 16 35 H 0.07 2.80 4.95 -2.39 -0.01 2.79 16 36 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 38 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 39 H 0.05 1.85 7.56 -2.39 -0.02 1.83 16 40 H 0.05 1.72 7.07 -2.39 -0.02 1.70 16 41 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.08 1.51 7.84 -2.39 -0.02 1.49 16 46 H 0.06 1.49 7.72 -2.39 -0.02 1.48 16 Total: -1.00 -59.81 334.84 2.42 -57.39 By element: Atomic # 1 Polarization: 32.26 SS G_CDS: 0.61 Total: 32.87 kcal Atomic # 6 Polarization: -42.74 SS G_CDS: 3.16 Total: -39.58 kcal Atomic # 7 Polarization: -80.64 SS G_CDS: -2.05 Total: -82.69 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: -1.33 Total: -13.62 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -59.81 2.42 -57.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602609337.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.095 kcal (2) G-P(sol) polarization free energy of solvation -59.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds