Wall clock time and date at job start Tue Mar 31 2020 02:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47734 * 2 1 4 4 H 1.09004 * 109.46909 * 56.90152 * 3 2 1 5 5 C 1.50691 * 109.47635 * 176.90789 * 3 2 1 6 6 H 1.07996 * 120.00607 * 120.00352 * 5 3 2 7 7 C 1.37888 * 119.99766 * 299.99751 * 5 3 2 8 8 N 1.31509 * 119.99606 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99805 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47392 * 60.00361 * 9 7 5 11 11 H 1.48509 * 109.46797 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.47154 * 299.99755 * 9 7 5 13 13 N 1.46906 * 109.46942 * 296.90918 * 3 2 1 14 14 C 1.46898 * 111.00144 * 103.48269 * 13 3 2 15 15 H 1.09000 * 112.82211 * 314.37867 * 14 13 3 16 16 C 1.53830 * 113.56851 * 85.44420 * 14 13 3 17 17 H 1.08993 * 116.72480 * 19.54434 * 16 14 13 18 18 C 1.54440 * 112.96116 * 242.45285 * 16 14 13 19 19 C 1.54446 * 104.15394 * 266.36944 * 18 16 14 20 20 O 1.44361 * 104.79977 * 24.39423 * 19 18 16 21 21 C 1.44259 * 105.49390 * 319.48636 * 20 19 18 22 22 H 1.08999 * 114.87341 * 270.93553 * 21 20 19 23 23 C 1.52932 * 113.64467 * 133.10623 * 21 20 19 24 24 C 1.53610 * 115.05726 * 162.12484 * 23 21 20 25 25 C 1.55039 * 104.02367 * 207.18735 * 24 23 21 26 26 C 1.54946 * 102.86129 * 37.30225 * 25 24 23 27 27 C 1.53251 * 115.26158 * 36.38846 * 23 21 20 28 28 H 1.09003 * 109.47144 * 185.74620 * 1 2 3 29 29 H 1.09003 * 109.46348 * 305.74037 * 1 2 3 30 30 H 1.08996 * 109.46985 * 65.74011 * 1 2 3 31 31 H 1.09007 * 109.46882 * 240.00195 * 2 1 3 32 32 H 1.08999 * 109.47327 * 120.00553 * 2 1 3 33 33 H 0.97002 * 119.99534 * 180.02562 * 8 7 5 34 34 H 1.00900 * 110.99475 * 339.53288 * 13 3 2 35 35 H 1.09003 * 110.49263 * 25.03646 * 18 16 14 36 36 H 1.09002 * 110.48910 * 147.56560 * 18 16 14 37 37 H 1.09004 * 110.37078 * 265.56188 * 19 18 16 38 38 H 1.08994 * 110.37344 * 143.23007 * 19 18 16 39 39 H 1.09004 * 110.51906 * 325.82765 * 24 23 21 40 40 H 1.09004 * 110.51418 * 88.55073 * 24 23 21 41 41 H 1.09001 * 110.73558 * 278.95975 * 25 24 23 42 42 H 1.09007 * 110.88978 * 155.71711 * 25 24 23 43 43 H 1.08999 * 110.48305 * 203.73188 * 26 25 24 44 44 H 1.08999 * 110.48056 * 81.10448 * 26 25 24 45 45 H 1.08995 * 110.08650 * 248.55198 * 27 23 21 46 46 H 1.09001 * 110.08562 * 10.12108 * 27 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6322 1.9721 0.8609 5 6 3.5451 1.4431 0.0766 6 1 4.1259 1.8964 -0.7130 7 6 4.1807 0.8651 1.1551 8 7 3.4735 0.3128 2.1165 9 14 6.0463 0.8665 1.2505 10 1 6.5408 2.2667 1.2509 11 1 6.4786 0.1880 2.4987 12 1 6.6025 0.1453 0.0775 13 7 1.6124 2.1131 -1.2351 14 6 0.4840 3.0181 -0.9791 15 1 -0.2884 2.5653 -0.3574 16 6 0.9129 4.4174 -0.5057 17 1 1.9411 4.7120 -0.7154 18 6 0.4070 4.7545 0.9140 19 6 -0.9232 5.5016 0.6735 20 8 -1.3719 5.0479 -0.6215 21 6 -0.1861 4.9866 -1.4406 22 1 0.0557 5.9099 -1.9671 23 6 -0.0599 3.6897 -2.2411 24 6 0.9203 3.7471 -3.4225 25 6 0.3731 2.6903 -4.4163 26 6 -1.1620 2.8465 -4.2751 27 6 -1.3791 3.1166 -2.7701 28 1 -0.3633 -1.0225 0.1029 29 1 -0.3632 0.6003 0.8342 30 1 -0.3633 0.4222 -0.9369 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.9206 -0.0935 2.8754 34 1 1.3812 1.4401 -1.9504 35 1 0.2343 3.8417 1.4843 36 1 1.1200 5.3970 1.4306 37 1 -0.7566 6.5787 0.6614 38 1 -1.6507 5.2379 1.4410 39 1 0.9138 4.7380 -3.8765 40 1 1.9262 3.4812 -3.0975 41 1 0.6874 1.6879 -4.1255 42 1 0.6916 2.9129 -5.4347 43 1 -1.6679 1.9287 -4.5748 44 1 -1.5158 3.6894 -4.8688 45 1 -1.6174 2.1870 -2.2534 46 1 -2.1834 3.8392 -2.6316 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602609338.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:31 Heat of formation + Delta-G solvation = -34.160056 kcal Electronic energy + Delta-G solvation = -24021.421978 eV Core-core repulsion = 20910.843962 eV Total energy + Delta-G solvation = -3110.578017 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.04133 -37.25688 -35.92565 -33.48172 -31.83653 -30.71322 -29.82950 -28.40755 -26.67048 -25.96626 -23.50793 -22.37104 -22.18565 -20.82305 -19.75315 -19.49965 -17.80416 -16.38670 -16.04783 -15.86091 -15.24138 -14.88303 -14.61969 -14.41023 -13.95381 -13.43930 -13.07036 -12.88555 -12.79440 -12.37341 -12.31129 -12.10655 -11.54488 -11.39231 -11.24221 -10.96831 -10.85602 -10.76922 -10.70489 -10.62567 -10.59796 -10.39927 -10.28405 -10.03805 -9.97788 -9.83698 -9.68878 -9.47186 -9.20456 -8.89498 -8.29476 -7.14394 -5.93936 -3.96459 3.35289 3.39596 3.42783 3.91377 4.46243 4.66427 4.79120 4.91129 5.02936 5.13384 5.22090 5.35474 5.38572 5.42609 5.49786 5.61451 5.69819 5.73840 5.80985 5.88262 5.92398 6.01659 6.04782 6.12534 6.15633 6.16679 6.20348 6.26365 6.36049 6.39889 6.42760 6.50937 6.56826 6.62486 6.74764 6.82770 6.84719 7.01888 7.18045 7.24191 7.48891 7.78945 7.95400 8.36868 8.63384 8.67609 9.11105 9.68258 11.12026 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.017332 B = 0.006196 C = 0.005599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.080294 B = 4517.637050 C = 4999.492440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.146 4.146 3 C 0.221 3.779 4 H 0.027 0.973 5 C -0.488 4.488 6 H 0.061 0.939 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.894 3.106 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.279 1.279 13 N -0.668 5.668 14 C 0.094 3.906 15 H 0.060 0.940 16 C -0.116 4.116 17 H 0.113 0.887 18 C -0.149 4.149 19 C 0.049 3.951 20 O -0.362 6.362 21 C 0.051 3.949 22 H 0.084 0.916 23 C -0.069 4.069 24 C -0.098 4.098 25 C -0.121 4.121 26 C -0.125 4.125 27 C -0.106 4.106 28 H 0.034 0.966 29 H 0.041 0.959 30 H 0.034 0.966 31 H 0.035 0.965 32 H 0.098 0.902 33 H 0.259 0.741 34 H 0.324 0.676 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.053 0.947 38 H 0.086 0.914 39 H 0.058 0.942 40 H 0.096 0.904 41 H 0.068 0.932 42 H 0.060 0.940 43 H 0.058 0.942 44 H 0.059 0.941 45 H 0.060 0.940 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.591 7.293 -7.592 13.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.186 4.186 3 C 0.113 3.887 4 H 0.045 0.955 5 C -0.527 4.527 6 H 0.079 0.921 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.722 3.278 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.205 1.205 13 N -0.298 5.298 14 C -0.017 4.017 15 H 0.077 0.923 16 C -0.135 4.135 17 H 0.131 0.869 18 C -0.186 4.186 19 C -0.028 4.028 20 O -0.281 6.281 21 C -0.007 4.007 22 H 0.102 0.898 23 C -0.070 4.070 24 C -0.136 4.136 25 C -0.158 4.158 26 C -0.163 4.163 27 C -0.144 4.144 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.116 0.884 33 H 0.068 0.932 34 H 0.141 0.859 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.071 0.929 38 H 0.104 0.896 39 H 0.076 0.924 40 H 0.114 0.886 41 H 0.087 0.913 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.079 0.921 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.308 7.635 -7.410 13.499 hybrid contribution 0.417 -0.654 0.553 0.952 sum -7.891 6.981 -6.857 12.571 Atomic orbital electron populations 1.21900 0.99605 0.99436 0.99585 1.22216 0.91321 1.02114 1.02924 1.19147 0.94891 0.88362 0.86303 0.95472 1.21196 0.91109 1.35060 1.05321 0.92075 1.24950 0.98002 0.95782 0.95864 1.69862 1.34858 1.39056 1.10065 0.86638 0.86067 0.78048 0.77033 1.20467 1.21601 1.20460 1.60908 1.33263 1.23682 1.11950 1.22781 0.92383 0.92462 0.94040 0.92272 1.24037 0.99419 0.97475 0.92558 0.86893 1.22897 0.96403 1.01202 0.98132 1.23444 0.96051 0.97599 0.85718 1.88946 1.29221 1.87967 1.22008 1.24005 0.85626 0.96626 0.94414 0.89832 1.22101 0.95517 0.94536 0.94797 1.22027 1.00168 0.98177 0.93224 1.22492 0.94880 0.99795 0.98668 1.22409 0.96634 1.00621 0.96593 1.21960 0.97036 1.00565 0.94827 0.94706 0.93957 0.94735 0.94620 0.88377 0.93158 0.85853 0.90489 0.90977 0.92876 0.89619 0.92380 0.88587 0.91313 0.92117 0.92327 0.92245 0.92113 0.91521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 8.66 37.16 0.32 -2.57 16 2 C -0.15 -3.38 5.05 -26.73 -0.14 -3.51 16 3 C 0.22 5.26 2.19 -68.87 -0.15 5.11 16 4 H 0.03 0.73 7.62 -51.93 -0.40 0.33 16 5 C -0.49 -13.08 8.84 -34.44 -0.30 -13.39 16 6 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 7 C 0.05 1.47 5.30 -17.82 -0.09 1.38 16 8 N -0.90 -25.27 11.30 55.43 0.63 -24.65 16 9 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 N -0.67 -13.26 4.58 -100.53 -0.46 -13.72 16 14 C 0.09 1.66 1.71 -67.31 -0.12 1.54 16 15 H 0.06 1.15 6.45 -51.93 -0.34 0.82 16 16 C -0.12 -1.93 4.73 -88.32 -0.42 -2.35 16 17 H 0.11 2.00 8.14 -51.93 -0.42 1.58 16 18 C -0.15 -2.32 6.64 -25.22 -0.17 -2.49 16 19 C 0.05 0.66 7.63 37.92 0.29 0.95 16 20 O -0.36 -5.66 10.36 -35.23 -0.37 -6.03 16 21 C 0.05 0.77 4.74 -25.65 -0.12 0.64 16 22 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 23 C -0.07 -1.03 1.02 -154.12 -0.16 -1.18 16 24 C -0.10 -1.36 5.62 -25.34 -0.14 -1.50 16 25 C -0.12 -1.51 6.91 -24.63 -0.17 -1.68 16 26 C -0.12 -1.51 6.84 -24.95 -0.17 -1.68 16 27 C -0.11 -1.49 6.05 -25.85 -0.16 -1.65 16 28 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.04 0.84 7.98 -51.93 -0.41 0.43 16 30 H 0.03 0.62 6.89 -51.93 -0.36 0.26 16 31 H 0.04 0.81 8.09 -51.93 -0.42 0.39 16 32 H 0.10 2.58 5.99 -51.93 -0.31 2.26 16 33 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 34 H 0.32 6.23 7.28 -39.29 -0.29 5.95 16 35 H 0.08 1.35 7.89 -51.93 -0.41 0.94 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 39 H 0.06 0.73 8.11 -51.93 -0.42 0.31 16 40 H 0.10 1.51 6.96 -51.93 -0.36 1.15 16 41 H 0.07 0.91 7.75 -51.93 -0.40 0.51 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.06 0.91 7.89 -51.93 -0.41 0.50 16 46 H 0.07 0.95 7.44 -51.93 -0.39 0.57 16 LS Contribution 344.79 15.07 5.20 5.20 Total: -1.00 -27.19 344.79 -9.98 -37.16 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -8.26 Total: 8.10 kcal Atomic # 6 Polarization: -20.69 SS G_CDS: -1.69 Total: -22.38 kcal Atomic # 7 Polarization: -38.54 SS G_CDS: 0.17 Total: -38.37 kcal Atomic # 8 Polarization: -5.66 SS G_CDS: -0.37 Total: -6.03 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -27.19 -9.98 -37.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602609338.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.004 kcal (2) G-P(sol) polarization free energy of solvation -27.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds