Wall clock time and date at job start Tue Mar 31 2020 02:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47734 * 2 1 4 4 H 1.09004 * 109.46909 * 56.90152 * 3 2 1 5 5 C 1.50691 * 109.47635 * 176.90789 * 3 2 1 6 6 H 1.07996 * 120.00607 * 120.00352 * 5 3 2 7 7 C 1.37888 * 119.99766 * 299.99751 * 5 3 2 8 8 N 1.31509 * 119.99606 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99805 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47392 * 60.00361 * 9 7 5 11 11 H 1.48509 * 109.46797 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.47154 * 299.99755 * 9 7 5 13 13 N 1.46906 * 109.46942 * 296.90918 * 3 2 1 14 14 C 1.46898 * 111.00144 * 103.48269 * 13 3 2 15 15 H 1.09000 * 112.82211 * 314.37867 * 14 13 3 16 16 C 1.53830 * 113.56851 * 85.44420 * 14 13 3 17 17 H 1.08993 * 116.72480 * 19.54434 * 16 14 13 18 18 C 1.54440 * 112.96116 * 242.45285 * 16 14 13 19 19 C 1.54446 * 104.15394 * 266.36944 * 18 16 14 20 20 O 1.44361 * 104.79977 * 24.39423 * 19 18 16 21 21 C 1.44259 * 105.49390 * 319.48636 * 20 19 18 22 22 H 1.08999 * 114.87341 * 270.93553 * 21 20 19 23 23 C 1.52932 * 113.64467 * 133.10623 * 21 20 19 24 24 C 1.53610 * 115.05726 * 162.12484 * 23 21 20 25 25 C 1.55039 * 104.02367 * 207.18735 * 24 23 21 26 26 C 1.54946 * 102.86129 * 37.30225 * 25 24 23 27 27 C 1.53251 * 115.26158 * 36.38846 * 23 21 20 28 28 H 1.09003 * 109.47144 * 185.74620 * 1 2 3 29 29 H 1.09003 * 109.46348 * 305.74037 * 1 2 3 30 30 H 1.08996 * 109.46985 * 65.74011 * 1 2 3 31 31 H 1.09007 * 109.46882 * 240.00195 * 2 1 3 32 32 H 1.08999 * 109.47327 * 120.00553 * 2 1 3 33 33 H 0.97002 * 119.99534 * 180.02562 * 8 7 5 34 34 H 1.00900 * 110.99475 * 339.53288 * 13 3 2 35 35 H 1.09003 * 110.49263 * 25.03646 * 18 16 14 36 36 H 1.09002 * 110.48910 * 147.56560 * 18 16 14 37 37 H 1.09004 * 110.37078 * 265.56188 * 19 18 16 38 38 H 1.08994 * 110.37344 * 143.23007 * 19 18 16 39 39 H 1.09004 * 110.51906 * 325.82765 * 24 23 21 40 40 H 1.09004 * 110.51418 * 88.55073 * 24 23 21 41 41 H 1.09001 * 110.73558 * 278.95975 * 25 24 23 42 42 H 1.09007 * 110.88978 * 155.71711 * 25 24 23 43 43 H 1.08999 * 110.48305 * 203.73188 * 26 25 24 44 44 H 1.08999 * 110.48056 * 81.10448 * 26 25 24 45 45 H 1.08995 * 110.08650 * 248.55198 * 27 23 21 46 46 H 1.09001 * 110.08562 * 10.12108 * 27 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6322 1.9721 0.8609 5 6 3.5451 1.4431 0.0766 6 1 4.1259 1.8964 -0.7130 7 6 4.1807 0.8651 1.1551 8 7 3.4735 0.3128 2.1165 9 14 6.0463 0.8665 1.2505 10 1 6.5408 2.2667 1.2509 11 1 6.4786 0.1880 2.4987 12 1 6.6025 0.1453 0.0775 13 7 1.6124 2.1131 -1.2351 14 6 0.4840 3.0181 -0.9791 15 1 -0.2884 2.5653 -0.3574 16 6 0.9129 4.4174 -0.5057 17 1 1.9411 4.7120 -0.7154 18 6 0.4070 4.7545 0.9140 19 6 -0.9232 5.5016 0.6735 20 8 -1.3719 5.0479 -0.6215 21 6 -0.1861 4.9866 -1.4406 22 1 0.0557 5.9099 -1.9671 23 6 -0.0599 3.6897 -2.2411 24 6 0.9203 3.7471 -3.4225 25 6 0.3731 2.6903 -4.4163 26 6 -1.1620 2.8465 -4.2751 27 6 -1.3791 3.1166 -2.7701 28 1 -0.3633 -1.0225 0.1029 29 1 -0.3632 0.6003 0.8342 30 1 -0.3633 0.4222 -0.9369 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.9206 -0.0935 2.8754 34 1 1.3812 1.4401 -1.9504 35 1 0.2343 3.8417 1.4843 36 1 1.1200 5.3970 1.4306 37 1 -0.7566 6.5787 0.6614 38 1 -1.6507 5.2379 1.4410 39 1 0.9138 4.7380 -3.8765 40 1 1.9262 3.4812 -3.0975 41 1 0.6874 1.6879 -4.1255 42 1 0.6916 2.9129 -5.4347 43 1 -1.6679 1.9287 -4.5748 44 1 -1.5158 3.6894 -4.8688 45 1 -1.6174 2.1870 -2.2534 46 1 -2.1834 3.8392 -2.6316 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602609338.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:31 Heat of formation + Delta-G solvation = -48.586728 kcal Electronic energy + Delta-G solvation = -24022.047566 eV Core-core repulsion = 20910.843962 eV Total energy + Delta-G solvation = -3111.203604 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.30073 -38.47830 -37.57887 -34.92364 -33.75255 -31.94040 -31.44222 -29.49556 -28.57822 -27.09668 -25.23939 -23.80214 -23.52281 -21.94862 -21.56354 -20.73525 -19.15737 -18.21365 -17.47317 -17.08474 -16.68911 -16.29453 -16.09379 -15.87506 -15.30478 -14.98794 -14.70816 -14.27881 -14.17807 -13.65506 -13.61979 -13.47206 -13.29827 -13.10066 -12.75119 -12.60471 -12.52738 -12.24294 -11.96183 -11.88256 -11.83908 -11.79544 -11.67855 -11.59470 -11.44256 -11.31617 -11.26192 -10.97100 -10.68323 -10.39284 -10.35121 -8.84740 -8.03196 -6.13336 1.43176 1.43899 1.51469 2.46059 2.73853 3.22872 3.39080 3.58743 3.71111 3.80057 3.95664 3.98361 4.18891 4.30273 4.33974 4.37886 4.41253 4.48384 4.49320 4.58147 4.66591 4.67486 4.77450 4.78962 4.86207 4.94806 4.99638 5.01395 5.07632 5.15274 5.18767 5.21923 5.23844 5.30332 5.38454 5.42612 5.50745 5.58035 5.60068 5.65459 5.77617 5.90362 5.99872 6.39660 6.76469 6.95220 7.01957 7.55937 9.00298 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.017332 B = 0.006196 C = 0.005599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.080294 B = 4517.637050 C = 4999.492440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.140 4.140 3 C 0.232 3.768 4 H -0.007 1.007 5 C -0.504 4.504 6 H 0.053 0.947 7 C 0.009 3.991 8 N -0.923 5.923 9 Si 0.953 3.047 10 H -0.275 1.275 11 H -0.288 1.288 12 H -0.273 1.273 13 N -0.661 5.661 14 C 0.089 3.911 15 H 0.039 0.961 16 C -0.127 4.127 17 H 0.100 0.900 18 C -0.150 4.150 19 C 0.054 3.946 20 O -0.376 6.376 21 C 0.064 3.936 22 H 0.107 0.893 23 C -0.062 4.062 24 C -0.096 4.096 25 C -0.118 4.118 26 C -0.117 4.117 27 C -0.105 4.105 28 H 0.052 0.948 29 H 0.031 0.969 30 H 0.049 0.951 31 H 0.034 0.966 32 H 0.065 0.935 33 H 0.258 0.742 34 H 0.327 0.673 35 H 0.047 0.953 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.098 0.902 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.056 0.944 42 H 0.080 0.920 43 H 0.067 0.933 44 H 0.075 0.925 45 H 0.046 0.954 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.199 8.424 -9.332 15.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.180 4.180 3 C 0.123 3.877 4 H 0.011 0.989 5 C -0.543 4.543 6 H 0.071 0.929 7 C -0.189 4.189 8 N -0.563 5.563 9 Si 0.779 3.221 10 H -0.201 1.201 11 H -0.214 1.214 12 H -0.199 1.199 13 N -0.291 5.291 14 C -0.022 4.022 15 H 0.056 0.944 16 C -0.146 4.146 17 H 0.118 0.882 18 C -0.188 4.188 19 C -0.023 4.023 20 O -0.295 6.295 21 C 0.006 3.994 22 H 0.124 0.876 23 C -0.063 4.063 24 C -0.134 4.134 25 C -0.156 4.156 26 C -0.155 4.155 27 C -0.143 4.143 28 H 0.071 0.929 29 H 0.050 0.950 30 H 0.068 0.932 31 H 0.053 0.947 32 H 0.084 0.916 33 H 0.067 0.933 34 H 0.145 0.855 35 H 0.066 0.934 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.116 0.884 39 H 0.096 0.904 40 H 0.092 0.908 41 H 0.074 0.926 42 H 0.099 0.901 43 H 0.086 0.914 44 H 0.094 0.906 45 H 0.065 0.935 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.924 8.773 -9.163 15.510 hybrid contribution 0.606 -0.999 1.130 1.626 sum -8.318 7.774 -8.033 13.934 Atomic orbital electron populations 1.21728 0.96871 1.00521 0.99955 1.22042 0.93731 1.01052 1.01175 1.18828 0.93451 0.88722 0.86694 0.98928 1.21507 0.92769 1.34887 1.05149 0.92900 1.25656 1.02065 0.95553 0.95624 1.70004 1.36295 1.39622 1.10416 0.85700 0.81229 0.78086 0.77075 1.20073 1.21353 1.19856 1.60812 1.34755 1.23379 1.10199 1.22788 0.91227 0.92179 0.95986 0.94373 1.24042 0.99504 0.97189 0.93913 0.88208 1.22878 0.98122 1.00411 0.97361 1.23533 0.94843 0.98615 0.85270 1.88929 1.29511 1.88306 1.22748 1.24007 0.84367 0.97379 0.93603 0.87601 1.22088 0.96248 0.93897 0.94026 1.22003 0.98524 0.99731 0.93092 1.22482 0.95213 0.98611 0.99290 1.22379 0.96231 1.01802 0.95045 1.21933 0.96258 0.99775 0.96290 0.92878 0.95011 0.93185 0.94690 0.91617 0.93330 0.85486 0.93385 0.90282 0.90297 0.88422 0.90440 0.90847 0.92560 0.90123 0.91392 0.90586 0.93498 0.91496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.26 8.66 71.98 0.62 -4.63 16 2 C -0.14 -6.66 5.05 30.59 0.15 -6.51 16 3 C 0.23 11.46 2.19 44.16 0.10 11.55 16 4 H -0.01 -0.40 7.62 -2.38 -0.02 -0.42 16 5 C -0.50 -27.77 8.84 25.60 0.23 -27.55 16 6 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 7 C 0.01 0.48 5.30 84.66 0.45 0.93 16 8 N -0.92 -53.40 11.30 21.45 0.24 -53.16 16 9 Si 0.95 44.30 29.54 68.60 2.03 46.32 16 10 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 12 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 13 N -0.66 -26.88 4.58 -471.96 -2.16 -29.04 16 14 C 0.09 3.16 1.71 45.18 0.08 3.24 16 15 H 0.04 1.54 6.45 -2.39 -0.02 1.52 16 16 C -0.13 -4.26 4.73 -9.30 -0.04 -4.31 16 17 H 0.10 3.60 8.14 -2.39 -0.02 3.58 16 18 C -0.15 -4.75 6.64 31.57 0.21 -4.54 16 19 C 0.05 1.38 7.63 72.47 0.55 1.93 16 20 O -0.38 -11.09 10.36 -148.98 -1.54 -12.64 16 21 C 0.06 1.81 4.74 31.29 0.15 1.96 16 22 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 23 C -0.06 -1.77 1.02 -51.93 -0.05 -1.82 16 24 C -0.10 -2.47 5.62 31.50 0.18 -2.29 16 25 C -0.12 -2.67 6.91 31.96 0.22 -2.45 16 26 C -0.12 -2.48 6.84 31.75 0.22 -2.26 16 27 C -0.10 -2.75 6.05 31.17 0.19 -2.56 16 28 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.03 1.29 7.98 -2.39 -0.02 1.27 16 30 H 0.05 1.79 6.89 -2.39 -0.02 1.78 16 31 H 0.03 1.62 8.09 -2.38 -0.02 1.60 16 32 H 0.07 3.57 5.99 -2.39 -0.01 3.56 16 33 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 34 H 0.33 12.72 7.28 -89.69 -0.65 12.07 16 35 H 0.05 1.78 7.89 -2.39 -0.02 1.76 16 36 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 38 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.08 1.71 8.11 -2.38 -0.02 1.69 16 40 H 0.07 2.25 6.96 -2.38 -0.02 2.24 16 41 H 0.06 1.41 7.75 -2.39 -0.02 1.39 16 42 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 43 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.08 1.39 8.14 -2.39 -0.02 1.38 16 45 H 0.05 1.35 7.89 -2.39 -0.02 1.33 16 46 H 0.07 1.76 7.44 -2.39 -0.02 1.74 16 Total: -1.00 -59.56 344.79 2.09 -57.46 By element: Atomic # 1 Polarization: 30.08 SS G_CDS: 0.29 Total: 30.37 kcal Atomic # 6 Polarization: -42.55 SS G_CDS: 3.25 Total: -39.31 kcal Atomic # 7 Polarization: -80.28 SS G_CDS: -1.92 Total: -82.20 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: -1.54 Total: -12.64 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Total: -59.56 2.09 -57.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602609338.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.874 kcal (2) G-P(sol) polarization free energy of solvation -59.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds