Wall clock time and date at job start Tue Mar 31 2020 02:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.46929 * 2 1 4 4 C 1.53004 * 109.47005 * 179.97438 * 3 2 1 5 5 N 1.46897 * 109.46927 * 174.89856 * 4 3 2 6 6 C 1.46906 * 110.99933 * 62.11344 * 5 4 3 7 7 C 1.53002 * 109.47229 * 66.04102 * 6 5 4 8 8 C 1.50692 * 109.47271 * 179.97438 * 7 6 5 9 9 H 1.08002 * 119.99951 * 0.02562 * 8 7 6 10 10 C 1.37877 * 120.00416 * 179.97438 * 8 7 6 11 11 N 1.31519 * 119.99412 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00405 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47074 * 90.00247 * 12 10 8 14 14 H 1.48496 * 109.47153 * 210.00252 * 12 10 8 15 15 H 1.48499 * 109.46956 * 330.00379 * 12 10 8 16 16 C 1.46899 * 111.00276 * 298.15972 * 5 4 3 17 17 H 1.08999 * 109.46943 * 67.89619 * 16 5 4 18 18 C 1.52997 * 109.46975 * 187.89573 * 16 5 4 19 19 C 1.50703 * 109.46932 * 307.89245 * 16 5 4 20 20 C 1.34510 * 125.78540 * 134.63953 * 19 16 5 21 21 C 1.41389 * 106.83995 * 179.73952 * 20 19 16 22 22 C 1.34510 * 106.83924 * 359.97438 * 21 20 19 23 23 C 1.50695 * 125.79178 * 180.02562 * 22 21 20 24 24 O 1.34300 * 125.78909 * 314.33667 * 19 16 5 25 25 H 1.08994 * 109.47021 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47218 * 299.99970 * 1 2 3 27 27 H 1.08998 * 109.47225 * 59.99903 * 1 2 3 28 28 H 1.08998 * 109.47354 * 240.00561 * 2 1 3 29 29 H 1.09005 * 109.47483 * 119.99808 * 2 1 3 30 30 H 1.09002 * 109.46801 * 60.00603 * 3 2 1 31 31 H 1.08998 * 109.47247 * 300.00084 * 3 2 1 32 32 H 1.09003 * 109.47021 * 54.90078 * 4 3 2 33 33 H 1.08993 * 109.47266 * 294.90305 * 4 3 2 34 34 H 1.08995 * 109.47292 * 186.04379 * 6 5 4 35 35 H 1.09004 * 109.46828 * 306.04517 * 6 5 4 36 36 H 1.08998 * 109.47193 * 300.00859 * 7 6 5 37 37 H 1.09004 * 109.46876 * 60.00444 * 7 6 5 38 38 H 0.97002 * 119.99684 * 180.02562 * 11 10 8 39 39 H 1.09000 * 109.46890 * 179.97438 * 18 16 5 40 40 H 1.08993 * 109.47576 * 299.99573 * 18 16 5 41 41 H 1.09005 * 109.47354 * 59.99826 * 18 16 5 42 42 H 1.08001 * 126.58603 * 359.69894 * 20 19 16 43 43 H 1.08001 * 126.57698 * 180.02562 * 21 20 19 44 44 H 1.09005 * 109.47094 * 89.99792 * 23 22 21 45 45 H 1.08997 * 109.47651 * 210.00361 * 23 22 21 46 46 H 1.09006 * 109.47253 * 330.00368 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0596 2.8221 -0.1225 6 6 3.6298 3.6374 1.0215 7 6 4.3039 3.1241 2.2955 8 6 3.8635 3.9608 3.4689 9 1 3.1716 4.7768 3.3208 10 6 4.3429 3.6841 4.7316 11 7 5.1850 2.6901 4.9119 12 14 3.7964 4.7208 6.1862 13 1 2.5772 4.1245 6.7888 14 1 4.8805 4.7614 7.2002 15 1 3.4971 6.1006 5.7260 16 6 3.6254 3.4237 -1.3904 17 1 2.5445 3.5630 -1.3750 18 6 4.3117 4.7788 -1.5733 19 6 3.9986 2.5135 -2.5320 20 6 3.2012 2.1747 -3.5609 21 6 3.9518 1.3145 -4.3950 22 6 5.1632 1.1796 -3.8261 23 6 6.3019 0.3517 -4.3636 24 8 5.1857 1.9075 -2.6977 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6766 1.9563 0.8901 31 1 1.6766 1.9564 -0.8900 32 1 3.9337 0.8516 -0.8399 33 1 3.9329 1.0100 0.9329 34 1 3.9130 4.6765 0.8539 35 1 2.5474 3.5687 1.1302 36 1 4.0208 2.0850 2.4630 37 1 5.3863 3.1928 2.1867 38 1 5.5221 2.4951 5.8004 39 1 3.9899 5.2250 -2.5143 40 1 4.0419 5.4372 -0.7476 41 1 5.3928 4.6395 -1.5885 42 1 2.1827 2.4973 -3.7193 43 1 3.6170 0.8548 -5.3132 44 1 6.9162 0.9639 -5.0240 45 1 6.9099 -0.0115 -3.5350 46 1 5.9034 -0.4962 -4.9207 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000604493571.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:21 Heat of formation + Delta-G solvation = -5.539228 kcal Electronic energy + Delta-G solvation = -22744.397530 eV Core-core repulsion = 19635.060605 eV Total energy + Delta-G solvation = -3109.336925 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.47599 -38.36803 -34.50125 -33.42802 -33.00845 -32.14287 -30.64490 -29.68060 -27.21903 -26.37718 -24.46693 -23.09156 -21.84432 -21.62041 -21.10408 -19.91841 -18.81639 -16.73785 -16.14711 -16.04571 -15.39198 -15.11630 -14.67731 -14.36519 -14.20051 -13.65087 -13.53140 -13.15897 -12.98640 -12.88527 -12.64245 -12.55150 -12.18140 -12.07813 -11.94952 -11.65774 -11.61362 -11.33042 -11.15743 -11.04548 -10.89499 -10.76277 -10.56475 -10.50432 -10.19159 -9.73504 -9.68023 -9.35617 -9.08644 -8.30294 -8.12348 -7.65160 -5.97276 -3.99544 1.87515 2.71539 3.06599 3.32965 3.39441 3.42387 4.32865 4.52864 4.69018 4.96876 5.11378 5.12504 5.16292 5.27929 5.34536 5.37777 5.38717 5.43706 5.45519 5.59255 5.63448 5.81803 5.86318 5.90298 5.91889 5.97891 6.00225 6.07545 6.14927 6.20264 6.27987 6.30512 6.39348 6.40546 6.46112 6.64298 6.65958 6.72201 7.02103 7.33484 7.52586 7.61296 7.81300 7.93399 8.11428 8.45786 9.07854 9.63916 11.14052 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.017522 B = 0.004486 C = 0.004041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.622610 B = 6240.764758 C = 6926.593073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.118 4.118 3 C -0.157 4.157 4 C 0.057 3.943 5 N -0.528 5.528 6 C 0.056 3.944 7 C 0.030 3.970 8 C -0.521 4.521 9 H 0.053 0.947 10 C 0.059 3.941 11 N -0.893 5.893 12 Si 0.890 3.110 13 H -0.281 1.281 14 H -0.286 1.286 15 H -0.274 1.274 16 C 0.154 3.846 17 H 0.067 0.933 18 C -0.145 4.145 19 C 0.023 3.977 20 C -0.221 4.221 21 C -0.213 4.213 22 C -0.025 4.025 23 C -0.072 4.072 24 O -0.155 6.155 25 H 0.049 0.951 26 H 0.054 0.946 27 H 0.049 0.951 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.086 0.914 34 H 0.065 0.935 35 H 0.026 0.974 36 H 0.017 0.983 37 H 0.024 0.976 38 H 0.260 0.740 39 H 0.056 0.944 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.141 0.859 43 H 0.142 0.858 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.962 -3.936 -18.092 18.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.156 4.156 3 C -0.195 4.195 4 C -0.071 4.071 5 N -0.251 5.251 6 C -0.071 4.071 7 C -0.007 4.007 8 C -0.560 4.560 9 H 0.071 0.929 10 C -0.142 4.142 11 N -0.532 5.532 12 Si 0.718 3.282 13 H -0.208 1.208 14 H -0.212 1.212 15 H -0.199 1.199 16 C 0.045 3.955 17 H 0.084 0.916 18 C -0.202 4.202 19 C -0.028 4.028 20 C -0.241 4.241 21 C -0.233 4.233 22 C -0.076 4.076 23 C -0.128 4.128 24 O -0.050 6.050 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.105 0.895 34 H 0.083 0.917 35 H 0.044 0.956 36 H 0.036 0.964 37 H 0.042 0.958 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.159 0.841 43 H 0.159 0.841 44 H 0.095 0.905 45 H 0.095 0.905 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.069 -3.991 -17.753 18.453 hybrid contribution -1.430 0.489 0.700 1.666 sum -4.499 -3.503 -17.052 17.980 Atomic orbital electron populations 1.21757 0.96316 1.01054 1.01579 1.21407 0.95427 0.97027 1.01736 1.22250 0.98260 0.97075 1.01962 1.22217 0.91994 0.90250 1.02680 1.62455 1.59294 1.02488 1.00849 1.22482 0.97410 0.96448 0.90719 1.19063 0.96447 0.96288 0.88898 1.21179 1.26943 1.15390 0.92443 0.92863 1.24976 0.95090 0.95291 0.98854 1.69978 1.31647 1.29179 1.22362 0.86627 0.78225 0.80785 0.82552 1.20761 1.21230 1.19900 1.20221 0.97465 0.91598 0.86195 0.91569 1.21897 1.01976 0.94824 1.01540 1.22362 0.83570 0.98538 0.98363 1.21457 1.01246 1.04445 0.96925 1.21438 0.94199 1.04895 1.02729 1.22420 0.98137 0.99173 0.87878 1.20248 0.94176 0.97515 1.00867 1.84084 1.34478 1.49214 1.37237 0.93177 0.92680 0.93225 0.92581 0.91823 0.91000 0.92703 0.91949 0.89543 0.91674 0.95551 0.96432 0.95788 0.93043 0.92535 0.91034 0.91385 0.84082 0.84057 0.90457 0.90520 0.89774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.91 37.16 0.37 -1.44 16 2 C -0.12 -1.62 5.93 -26.73 -0.16 -1.78 16 3 C -0.16 -2.44 4.53 -26.73 -0.12 -2.56 16 4 C 0.06 1.00 4.77 -3.82 -0.02 0.98 16 5 N -0.53 -9.75 4.57 -228.03 -1.04 -10.79 16 6 C 0.06 1.15 4.54 -3.82 -0.02 1.14 16 7 C 0.03 0.79 4.90 -27.89 -0.14 0.65 16 8 C -0.52 -14.66 9.11 -34.44 -0.31 -14.97 16 9 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 10 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 11 N -0.89 -26.92 13.29 55.43 0.74 -26.18 16 12 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 14 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 15 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 16 C 0.15 2.39 1.97 -68.86 -0.14 2.26 16 17 H 0.07 0.98 6.64 -51.93 -0.34 0.64 16 18 C -0.14 -2.09 9.07 37.16 0.34 -1.75 16 19 C 0.02 0.35 4.40 -35.62 -0.16 0.19 16 20 C -0.22 -2.98 10.79 -39.70 -0.43 -3.41 16 21 C -0.21 -2.66 10.81 -39.70 -0.43 -3.09 16 22 C -0.03 -0.33 7.32 -35.63 -0.26 -0.59 16 23 C -0.07 -0.65 10.42 36.00 0.37 -0.27 16 24 O -0.15 -2.49 10.22 5.70 0.06 -2.43 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.07 1.25 6.59 -51.93 -0.34 0.91 16 31 H 0.05 0.81 6.37 -51.93 -0.33 0.48 16 32 H 0.06 1.09 6.47 -51.93 -0.34 0.75 16 33 H 0.09 1.72 6.38 -51.93 -0.33 1.39 16 34 H 0.06 1.33 5.99 -51.93 -0.31 1.02 16 35 H 0.03 0.54 6.18 -51.93 -0.32 0.22 16 36 H 0.02 0.48 6.51 -51.93 -0.34 0.14 16 37 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.07 1.04 6.30 -51.93 -0.33 0.71 16 41 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.14 1.65 8.06 -52.49 -0.42 1.23 16 43 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 44 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 362.02 15.07 5.46 5.46 Total: -1.00 -30.68 362.02 -9.03 -39.70 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -8.02 Total: 0.65 kcal Atomic # 6 Polarization: -21.85 SS G_CDS: -1.19 Total: -23.05 kcal Atomic # 7 Polarization: -36.67 SS G_CDS: -0.31 Total: -36.97 kcal Atomic # 8 Polarization: -2.49 SS G_CDS: 0.06 Total: -2.43 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.68 -9.03 -39.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604493571.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.165 kcal (2) G-P(sol) polarization free energy of solvation -30.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds