Wall clock time and date at job start Tue Mar 31 2020 02:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.47095 * 2 1 4 4 C 1.52994 * 109.47095 * 180.02562 * 3 2 1 5 5 N 1.46904 * 109.46789 * 186.19718 * 4 3 2 6 6 C 1.46902 * 111.00304 * 288.78668 * 5 4 3 7 7 C 1.52992 * 109.47084 * 89.01476 * 6 5 4 8 8 C 1.50696 * 109.47160 * 183.32867 * 7 6 5 9 9 H 1.08003 * 120.00196 * 0.02562 * 8 7 6 10 10 C 1.37884 * 119.99840 * 179.97438 * 8 7 6 11 11 N 1.31506 * 120.00217 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 119.99657 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.47138 * 90.00299 * 12 10 8 14 14 H 1.48504 * 109.47009 * 210.00217 * 12 10 8 15 15 H 1.48503 * 109.47508 * 330.00193 * 12 10 8 16 16 C 1.46900 * 111.00027 * 164.83463 * 5 4 3 17 17 H 1.08998 * 109.47475 * 171.10986 * 16 5 4 18 18 C 1.53003 * 109.47276 * 51.10993 * 16 5 4 19 19 C 1.50707 * 109.47129 * 291.11397 * 16 5 4 20 20 C 1.34514 * 125.78904 * 226.11204 * 19 16 5 21 21 C 1.41381 * 106.84034 * 179.88624 * 20 19 16 22 22 C 1.34516 * 106.84083 * 0.37048 * 21 20 19 23 23 C 1.50701 * 125.79124 * 179.74684 * 22 21 20 24 24 O 1.34303 * 125.78671 * 46.41670 * 19 16 5 25 25 H 1.09003 * 109.47627 * 300.00305 * 1 2 3 26 26 H 1.09000 * 109.47119 * 60.00122 * 1 2 3 27 27 H 1.09000 * 109.47066 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47159 * 240.00259 * 2 1 3 29 29 H 1.09000 * 109.47461 * 119.99455 * 2 1 3 30 30 H 1.09003 * 109.47132 * 59.99392 * 3 2 1 31 31 H 1.09000 * 109.47038 * 299.99928 * 3 2 1 32 32 H 1.08998 * 109.47185 * 66.20117 * 4 3 2 33 33 H 1.08990 * 109.47170 * 306.19617 * 4 3 2 34 34 H 1.08999 * 109.47363 * 209.01891 * 6 5 4 35 35 H 1.09002 * 109.47105 * 329.01562 * 6 5 4 36 36 H 1.08998 * 109.47559 * 303.32912 * 7 6 5 37 37 H 1.09003 * 109.47441 * 63.32570 * 7 6 5 38 38 H 0.97005 * 119.99823 * 179.97438 * 11 10 8 39 39 H 1.08998 * 109.47133 * 59.99838 * 18 16 5 40 40 H 1.09007 * 109.46833 * 300.00595 * 18 16 5 41 41 H 1.08995 * 109.47146 * 180.02562 * 18 16 5 42 42 H 1.07996 * 126.57759 * 0.02622 * 20 19 16 43 43 H 1.07994 * 126.57981 * 180.12626 * 21 20 19 44 44 H 1.08993 * 109.47151 * 180.02562 * 23 22 21 45 45 H 1.09003 * 109.47010 * 300.00969 * 23 22 21 46 46 H 1.08998 * 109.46956 * 60.00113 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 7 4.0596 2.8195 0.1489 6 6 3.8181 3.5997 -1.0722 7 6 2.4368 4.2529 -0.9952 8 6 2.1553 4.9858 -2.2815 9 1 2.8882 4.9855 -3.0748 10 6 0.9616 5.6561 -2.4461 11 7 0.0690 5.6562 -1.4804 12 14 0.6131 6.5653 -4.0403 13 1 -0.0560 5.6478 -4.9972 14 1 -0.2723 7.7253 -3.7651 15 1 1.8906 7.0455 -4.6258 16 6 5.4831 2.8356 0.5109 17 1 5.8592 3.8574 0.4612 18 6 6.2675 1.9556 -0.4645 19 6 5.6513 2.3060 1.9118 20 6 6.4060 2.8607 2.8772 21 6 6.2724 2.0425 4.0225 22 6 5.4506 1.0322 3.6859 23 6 5.0218 -0.0939 4.5909 24 8 5.0775 1.1969 2.4062 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 1.6765 1.9564 0.8899 31 1 1.6766 1.9564 -0.8900 32 1 3.9328 1.0280 -0.9411 33 1 3.9335 0.8356 0.8284 34 1 4.5808 4.3727 -1.1663 35 1 3.8604 2.9402 -1.9391 36 1 1.6793 3.4842 -0.8419 37 1 2.4135 4.9568 -0.1633 38 1 -0.7706 6.1280 -1.5961 39 1 6.1459 2.3385 -1.4777 40 1 5.8913 0.9336 -0.4148 41 1 7.3237 1.9671 -0.1956 42 1 6.9983 3.7599 2.7942 43 1 6.7433 2.1967 4.9821 44 1 4.3556 -0.7635 4.0471 45 1 5.9001 -0.6470 4.9239 46 1 4.4999 0.3142 5.4565 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000604493572.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:24 Heat of formation + Delta-G solvation = -18.494712 kcal Electronic energy + Delta-G solvation = -22730.944824 eV Core-core repulsion = 19621.046108 eV Total energy + Delta-G solvation = -3109.898717 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.50195 -39.67882 -35.88002 -35.36139 -34.05370 -33.45833 -31.89994 -30.84809 -28.96488 -27.40701 -26.29901 -24.48055 -23.28397 -22.58228 -21.77535 -21.35986 -20.74350 -18.44079 -17.52671 -17.12709 -16.70479 -16.48755 -16.26393 -16.02143 -15.30603 -14.80186 -14.47470 -14.33657 -14.17964 -13.92646 -13.85992 -13.80605 -13.62065 -13.39628 -13.34216 -13.08876 -12.90873 -12.78875 -12.63030 -12.50991 -12.30878 -12.23226 -11.97078 -11.71784 -11.54435 -11.35137 -11.28796 -10.94824 -10.72828 -10.38179 -9.29071 -9.01322 -8.14789 -6.24909 0.83900 1.40583 1.41754 1.52495 1.73330 2.04713 2.42226 3.03195 3.18452 3.63605 3.94689 4.02186 4.07168 4.16625 4.19783 4.26140 4.33045 4.40528 4.45416 4.57294 4.64722 4.70062 4.73378 4.76206 4.77404 4.83622 4.91283 4.96565 4.98222 5.00502 5.06999 5.12046 5.18612 5.20741 5.29901 5.38154 5.40459 5.51184 5.60541 5.72467 5.77016 5.93275 6.16016 6.24304 6.38139 6.39830 6.93385 7.42896 8.96802 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.017125 B = 0.004643 C = 0.004054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.601574 B = 6029.436742 C = 6904.816820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.112 4.112 3 C -0.116 4.116 4 C 0.065 3.935 5 N -0.548 5.548 6 C 0.082 3.918 7 C 0.027 3.973 8 C -0.540 4.540 9 H 0.058 0.942 10 C 0.004 3.996 11 N -0.930 5.930 12 Si 0.960 3.040 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.263 1.263 16 C 0.157 3.843 17 H 0.108 0.892 18 C -0.173 4.173 19 C -0.005 4.005 20 C -0.218 4.218 21 C -0.222 4.222 22 C -0.035 4.035 23 C -0.070 4.070 24 O -0.182 6.182 25 H 0.046 0.954 26 H 0.039 0.961 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.041 0.959 31 H 0.051 0.949 32 H 0.036 0.964 33 H 0.085 0.915 34 H 0.058 0.942 35 H 0.032 0.968 36 H 0.022 0.978 37 H -0.020 1.020 38 H 0.261 0.739 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.079 0.921 42 H 0.158 0.842 43 H 0.167 0.833 44 H 0.075 0.925 45 H 0.104 0.896 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.831 -13.216 8.838 19.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.150 4.150 3 C -0.154 4.154 4 C -0.062 4.062 5 N -0.271 5.271 6 C -0.045 4.045 7 C -0.011 4.011 8 C -0.579 4.579 9 H 0.076 0.924 10 C -0.194 4.194 11 N -0.570 5.570 12 Si 0.785 3.215 13 H -0.199 1.199 14 H -0.210 1.210 15 H -0.188 1.188 16 C 0.048 3.952 17 H 0.126 0.874 18 C -0.232 4.232 19 C -0.055 4.055 20 C -0.238 4.238 21 C -0.241 4.241 22 C -0.085 4.085 23 C -0.126 4.126 24 O -0.079 6.079 25 H 0.065 0.935 26 H 0.058 0.942 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.103 0.897 34 H 0.077 0.923 35 H 0.050 0.950 36 H 0.040 0.960 37 H -0.001 1.001 38 H 0.070 0.930 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.098 0.902 42 H 0.175 0.825 43 H 0.184 0.816 44 H 0.094 0.906 45 H 0.122 0.878 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 11.218 -13.119 9.102 19.514 hybrid contribution -0.044 0.806 -1.245 1.484 sum 11.175 -12.313 7.857 18.390 Atomic orbital electron populations 1.21734 0.95761 1.02004 1.01139 1.21437 0.96042 0.95301 1.02253 1.21765 0.95203 0.97192 1.01268 1.22234 0.95188 0.88669 1.00139 1.62168 1.15247 1.13677 1.36034 1.22029 0.98610 0.95376 0.88477 1.19218 0.92708 0.94762 0.94386 1.21649 1.02135 1.32275 1.01849 0.92413 1.25882 0.96095 0.97444 0.99988 1.70122 1.08394 1.44141 1.34389 0.85527 0.78352 0.78116 0.79508 1.19863 1.20957 1.18757 1.20424 0.88486 0.99526 0.86726 0.87395 1.22417 1.01368 1.00164 0.99254 1.22393 0.98165 0.88117 0.96842 1.21789 1.05348 1.03460 0.93170 1.21791 1.04678 0.96753 1.00915 1.23252 1.00422 1.01320 0.83490 1.20438 1.03302 0.92963 0.95936 1.83995 1.58488 1.39690 1.25761 0.93509 0.94223 0.90741 0.91527 0.91098 0.94017 0.93020 0.94622 0.89717 0.92301 0.94968 0.95961 1.00134 0.92997 0.91598 0.92210 0.90238 0.82467 0.81563 0.90590 0.87792 0.88590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.24 9.91 71.98 0.71 -3.52 16 2 C -0.11 -3.25 5.93 30.59 0.18 -3.07 16 3 C -0.12 -4.34 4.20 30.59 0.13 -4.22 16 4 C 0.06 2.23 3.54 86.30 0.31 2.54 16 5 N -0.55 -20.58 4.31 -875.39 -3.78 -24.36 16 6 C 0.08 3.50 4.14 86.30 0.36 3.86 16 7 C 0.03 1.44 4.96 29.84 0.15 1.59 16 8 C -0.54 -31.10 9.11 25.60 0.23 -30.87 16 9 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 10 C 0.00 0.22 5.46 84.66 0.46 0.68 16 11 N -0.93 -57.63 13.29 21.45 0.28 -57.35 16 12 Si 0.96 44.81 29.54 68.60 2.03 46.84 16 13 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 14 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 15 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 16 C 0.16 4.81 2.71 44.17 0.12 4.93 16 17 H 0.11 3.22 7.68 -2.39 -0.02 3.20 16 18 C -0.17 -4.42 8.45 71.98 0.61 -3.81 16 19 C 0.00 -0.15 6.00 24.83 0.15 0.00 16 20 C -0.22 -5.90 10.79 22.19 0.24 -5.66 16 21 C -0.22 -5.35 10.81 22.19 0.24 -5.11 16 22 C -0.04 -0.87 7.32 24.83 0.18 -0.68 16 23 C -0.07 -1.08 10.42 71.24 0.74 -0.34 16 24 O -0.18 -5.50 8.05 -2.54 -0.02 -5.52 16 25 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.05 2.29 5.54 -2.39 -0.01 2.28 16 32 H 0.04 1.17 6.80 -2.39 -0.02 1.15 16 33 H 0.08 2.76 5.14 -2.39 -0.01 2.74 16 34 H 0.06 2.40 7.47 -2.39 -0.02 2.39 16 35 H 0.03 1.34 7.55 -2.39 -0.02 1.33 16 36 H 0.02 1.27 4.56 -2.39 -0.01 1.26 16 37 H -0.02 -1.21 8.14 -2.39 -0.02 -1.23 16 38 H 0.26 15.25 8.31 -92.70 -0.77 14.48 16 39 H 0.07 1.69 7.62 -2.39 -0.02 1.67 16 40 H 0.06 1.54 6.65 -2.38 -0.02 1.52 16 41 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.16 3.64 8.06 -2.91 -0.02 3.62 16 43 H 0.17 3.02 8.06 -2.91 -0.02 2.99 16 44 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -68.11 360.99 4.25 -63.86 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: 0.93 Total: 20.22 kcal Atomic # 6 Polarization: -48.49 SS G_CDS: 4.81 Total: -43.68 kcal Atomic # 7 Polarization: -78.22 SS G_CDS: -3.49 Total: -81.71 kcal Atomic # 8 Polarization: -5.50 SS G_CDS: -0.02 Total: -5.52 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -68.11 4.25 -63.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604493572.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.361 kcal (2) G-P(sol) polarization free energy of solvation -68.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds