Wall clock time and date at job start Tue Mar 31 2020 02:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.50690 * 120.00347 * 2 1 4 4 C 1.31006 * 119.99538 * 179.97438 * 2 1 3 5 5 C 1.50703 * 120.00168 * 4.15950 * 4 2 1 6 6 H 1.09001 * 115.56161 * 47.37010 * 5 4 2 7 7 C 1.53004 * 117.49858 * 261.68595 * 5 4 2 8 8 H 1.08992 * 117.50000 * 144.99886 * 7 5 4 9 9 C 1.50701 * 117.49683 * 359.97438 * 7 5 4 10 10 O 1.21279 * 120.00064 * 261.56011 * 9 7 5 11 11 N 1.34772 * 120.00133 * 81.56606 * 9 7 5 12 12 C 1.46499 * 120.00475 * 179.97438 * 11 9 7 13 13 C 1.53003 * 109.47367 * 180.02562 * 12 11 9 14 14 C 1.52996 * 109.46861 * 180.02562 * 13 12 11 15 15 C 1.50699 * 109.46898 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00059 * 0.02562 * 15 14 13 17 17 C 1.37882 * 120.00174 * 179.97438 * 15 14 13 18 18 N 1.31517 * 120.00002 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00214 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47150 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47203 * 120.00112 * 19 17 15 22 22 H 1.48498 * 109.47603 * 240.00194 * 19 17 15 23 23 C 1.53001 * 117.49700 * 193.06146 * 5 4 2 24 24 C 1.53001 * 117.49766 * 0.02562 * 23 5 4 25 25 C 1.53001 * 117.49791 * 214.97956 * 23 5 4 26 26 H 1.09000 * 109.47395 * 238.92744 * 1 2 3 27 27 H 1.08997 * 109.46588 * 358.93339 * 1 2 3 28 28 H 1.09004 * 109.47044 * 118.92360 * 1 2 3 29 29 H 1.09007 * 109.47233 * 269.99811 * 3 2 1 30 30 H 1.08995 * 109.47196 * 29.99373 * 3 2 1 31 31 H 1.08994 * 109.47517 * 149.99982 * 3 2 1 32 32 H 1.07997 * 119.99655 * 184.16189 * 4 2 1 33 33 H 0.97008 * 119.99687 * 359.97438 * 11 9 7 34 34 H 1.09003 * 109.46701 * 60.00076 * 12 11 9 35 35 H 1.09001 * 109.47356 * 300.00432 * 12 11 9 36 36 H 1.08994 * 109.46761 * 59.99939 * 13 12 11 37 37 H 1.08996 * 109.46759 * 299.99945 * 13 12 11 38 38 H 1.09001 * 109.47469 * 300.00159 * 14 13 12 39 39 H 1.09003 * 109.47094 * 60.00112 * 14 13 12 40 40 H 0.96997 * 120.00457 * 180.02562 * 18 17 15 41 41 H 1.09002 * 109.46658 * 143.75959 * 24 23 5 42 42 H 1.09004 * 109.47028 * 263.75276 * 24 23 5 43 43 H 1.08997 * 109.47314 * 23.76036 * 24 23 5 44 44 H 1.09001 * 109.46864 * 299.98623 * 25 23 5 45 45 H 1.08992 * 109.47021 * 59.98559 * 25 23 5 46 46 H 1.08996 * 109.46906 * 179.97438 * 25 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2606 1.3050 0.0000 4 6 2.1620 -1.1346 0.0005 5 6 1.4114 -2.4380 -0.0936 6 1 0.6466 -2.4854 -0.8688 7 6 1.1449 -3.1954 1.2089 8 1 0.2048 -3.7407 1.2906 9 6 1.6536 -2.5811 2.4875 10 8 2.6993 -2.9623 2.9693 11 7 0.9465 -1.6082 3.0957 12 6 1.4407 -1.0114 4.3390 13 6 0.4576 0.0591 4.8170 14 6 0.9741 0.6827 6.1151 15 6 0.0061 1.7375 6.5855 16 1 -0.8883 1.9423 6.0158 17 6 0.2617 2.4405 7.7438 18 7 1.3506 2.1909 8.4378 19 14 -0.9379 3.7485 8.3265 20 1 -2.0749 3.8364 7.3754 21 1 -1.4472 3.3879 9.6741 22 1 -0.2456 5.0605 8.3938 23 6 2.1837 -3.7219 0.2165 24 6 3.6587 -3.5841 0.5989 25 6 1.8234 -4.9741 -0.5854 26 1 -0.3634 -0.5304 0.8802 27 1 -0.3632 1.0275 0.0191 28 1 -0.3633 -0.4970 -0.8995 29 1 2.4423 1.6196 -1.0277 30 1 1.6715 2.0647 0.5137 31 1 3.2129 1.1747 0.5138 32 1 3.2398 -1.1358 0.0684 33 1 0.1103 -1.3031 2.7101 34 1 2.4154 -0.5568 4.1614 35 1 1.5341 -1.7849 5.1013 36 1 -0.5168 -0.3959 4.9946 37 1 0.3639 0.8326 4.0548 38 1 1.0682 -0.0906 6.8775 39 1 1.9485 1.1378 5.9370 40 1 1.5302 2.6851 9.2528 41 1 3.9085 -4.3270 1.3565 42 1 4.2790 -3.7422 -0.2834 43 1 3.8393 -2.5853 0.9960 44 1 0.7748 -5.2220 -0.4204 45 1 1.9899 -4.7867 -1.6461 46 1 2.4489 -5.8057 -0.2610 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609141973.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:06:55 Heat of formation + Delta-G solvation = -49.802668 kcal Electronic energy + Delta-G solvation = -22204.836686 eV Core-core repulsion = 19093.580354 eV Total energy + Delta-G solvation = -3111.256331 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.46263 -38.93809 -37.00894 -36.31216 -35.15967 -33.05044 -30.67312 -28.99882 -28.71823 -28.42892 -27.64067 -25.40430 -23.66581 -22.31902 -21.12222 -19.91762 -18.86080 -18.52536 -17.49500 -16.88865 -16.76789 -16.39572 -16.14507 -15.63814 -15.32758 -14.81985 -14.57188 -14.39165 -14.24179 -14.10994 -13.84612 -13.74561 -13.45747 -13.27782 -13.16057 -12.97162 -12.78509 -12.67474 -12.56021 -12.40194 -12.35269 -12.26706 -11.71088 -11.62551 -11.57785 -11.33371 -11.21156 -10.86467 -10.57270 -10.40764 -10.03509 -9.49397 -8.20350 -6.32007 1.18354 1.41212 1.41366 1.54720 1.66833 2.18075 2.41970 2.78564 3.13446 3.60470 3.68018 3.81968 4.07270 4.11880 4.16935 4.18826 4.22079 4.33906 4.41210 4.53030 4.71757 4.73058 4.74444 4.81133 4.88842 4.92353 4.97000 4.98494 5.01061 5.09639 5.10710 5.13571 5.14528 5.19276 5.23093 5.33648 5.46330 5.51721 5.55105 5.68625 5.76974 5.82714 6.03177 6.21124 6.63306 6.85590 7.32499 7.37778 8.92075 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.022109 B = 0.003593 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.170832 B = 7790.539065 C = 8433.773975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.114 4.114 3 C -0.122 4.122 4 C -0.166 4.166 5 C -0.071 4.071 6 H 0.144 0.856 7 C -0.182 4.182 8 H 0.153 0.847 9 C 0.539 3.461 10 O -0.582 6.582 11 N -0.709 5.709 12 C 0.133 3.867 13 C -0.099 4.099 14 C 0.025 3.975 15 C -0.539 4.539 16 H 0.067 0.933 17 C -0.004 4.004 18 N -0.936 5.936 19 Si 0.968 3.032 20 H -0.257 1.257 21 H -0.280 1.280 22 H -0.280 1.280 23 C -0.093 4.093 24 C -0.108 4.108 25 C -0.110 4.110 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.064 0.936 31 H 0.047 0.953 32 H 0.096 0.904 33 H 0.410 0.590 34 H 0.043 0.957 35 H 0.046 0.954 36 H 0.067 0.933 37 H 0.066 0.934 38 H -0.009 1.009 39 H -0.010 1.010 40 H 0.263 0.737 41 H 0.047 0.953 42 H 0.067 0.933 43 H 0.040 0.960 44 H 0.073 0.927 45 H 0.077 0.923 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.631 -9.606 -23.374 25.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.114 4.114 3 C -0.179 4.179 4 C -0.184 4.184 5 C -0.089 4.089 6 H 0.161 0.839 7 C -0.203 4.203 8 H 0.170 0.830 9 C 0.327 3.673 10 O -0.462 6.462 11 N -0.361 5.361 12 C 0.009 3.991 13 C -0.137 4.137 14 C -0.013 4.013 15 C -0.577 4.577 16 H 0.085 0.915 17 C -0.202 4.202 18 N -0.576 5.576 19 Si 0.792 3.208 20 H -0.181 1.181 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.094 4.094 24 C -0.165 4.165 25 C -0.167 4.167 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.103 0.897 29 H 0.100 0.900 30 H 0.083 0.917 31 H 0.066 0.934 32 H 0.114 0.886 33 H 0.246 0.754 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.009 0.991 39 H 0.008 0.992 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.086 0.914 43 H 0.059 0.941 44 H 0.092 0.908 45 H 0.096 0.904 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.807 -9.816 -22.869 25.045 hybrid contribution -0.183 0.936 1.070 1.434 sum -2.989 -8.880 -21.799 23.727 Atomic orbital electron populations 1.20896 0.90803 1.02985 1.02677 1.21775 0.96957 0.94550 0.98107 1.20900 0.99294 0.95152 1.02536 1.22006 0.98562 0.92639 1.05212 1.21425 1.01234 0.90132 0.96111 0.83868 1.22652 1.03369 1.06180 0.88105 0.82971 1.20236 0.83264 0.78607 0.85200 1.90667 1.25101 1.63208 1.67226 1.45976 1.26365 1.38366 1.25394 1.21160 0.97323 0.95244 0.85378 1.21567 0.97899 0.96342 0.97873 1.18930 0.95360 0.94568 0.92412 1.21695 1.07664 1.19919 1.08400 0.91495 1.26039 0.97298 0.99872 0.96945 1.70123 1.27574 1.43039 1.16882 0.85356 0.78936 0.78226 0.78266 1.18083 1.20580 1.20569 1.21711 0.92632 0.96309 0.98719 1.21268 0.93669 1.01290 1.00259 1.21353 1.02227 0.93715 0.99400 0.91638 0.91694 0.89654 0.89975 0.91671 0.93409 0.88640 0.75360 0.93900 0.93544 0.91435 0.91543 0.99105 0.99185 0.92820 0.93376 0.91368 0.94138 0.90816 0.90385 0.92071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.80 9.00 71.24 0.64 -1.16 16 2 C -0.11 -2.25 6.05 -16.50 -0.10 -2.35 16 3 C -0.12 -2.45 9.97 71.23 0.71 -1.74 16 4 C -0.17 -3.52 7.51 25.64 0.19 -3.33 16 5 C -0.07 -1.21 4.69 -11.54 -0.05 -1.27 16 6 H 0.14 1.67 7.62 -2.39 -0.02 1.65 16 7 C -0.18 -3.74 5.82 -11.54 -0.07 -3.80 16 8 H 0.15 2.30 8.05 -2.39 -0.02 2.28 16 9 C 0.54 16.18 6.12 87.66 0.54 16.71 16 10 O -0.58 -22.58 14.21 -3.03 -0.04 -22.62 16 11 N -0.71 -20.58 5.56 -463.06 -2.57 -23.15 16 12 C 0.13 4.92 5.67 86.38 0.49 5.41 16 13 C -0.10 -3.90 5.27 30.59 0.16 -3.74 16 14 C 0.02 1.32 4.97 29.85 0.15 1.47 16 15 C -0.54 -30.25 9.11 25.60 0.23 -30.01 16 16 H 0.07 3.53 7.74 -2.91 -0.02 3.50 16 17 C 0.00 -0.23 5.46 84.66 0.46 0.23 16 18 N -0.94 -57.59 13.29 21.45 0.28 -57.30 16 19 Si 0.97 43.90 29.54 68.60 2.03 45.92 16 20 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 21 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 22 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 23 C -0.09 -1.78 2.70 -52.18 -0.14 -1.92 16 24 C -0.11 -2.60 7.64 71.98 0.55 -2.05 16 25 C -0.11 -1.41 9.85 71.98 0.71 -0.70 16 26 H 0.06 1.01 6.76 -2.39 -0.02 0.99 16 27 H 0.06 0.97 7.93 -2.39 -0.02 0.95 16 28 H 0.08 0.97 7.67 -2.38 -0.02 0.95 16 29 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 30 H 0.06 1.31 8.04 -2.39 -0.02 1.29 16 31 H 0.05 1.08 8.04 -2.39 -0.02 1.06 16 32 H 0.10 2.37 6.34 -2.91 -0.02 2.35 16 33 H 0.41 9.48 7.12 -92.70 -0.66 8.82 16 34 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 37 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 38 H -0.01 -0.55 8.14 -2.39 -0.02 -0.56 16 39 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 40 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 41 H 0.05 1.33 7.73 -2.39 -0.02 1.31 16 42 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 43 H 0.04 1.17 4.99 -2.39 -0.01 1.16 16 44 H 0.07 0.74 7.90 -2.39 -0.02 0.72 16 45 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.06 0.83 8.09 -2.39 -0.02 0.81 16 Total: -1.00 -70.57 369.36 4.45 -66.12 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: 0.28 Total: 19.28 kcal Atomic # 6 Polarization: -32.72 SS G_CDS: 4.47 Total: -28.25 kcal Atomic # 7 Polarization: -78.17 SS G_CDS: -2.29 Total: -80.46 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -0.04 Total: -22.62 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Total: -70.57 4.45 -66.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609141973.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.320 kcal (2) G-P(sol) polarization free energy of solvation -70.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds