Wall clock time and date at job start Tue Mar 31 2020 02:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.50701 * 119.99953 * 2 1 4 4 C 1.31001 * 119.99895 * 179.97438 * 2 1 3 5 5 C 1.50703 * 119.99790 * 0.02562 * 4 2 1 6 6 H 1.09001 * 115.55251 * 334.27195 * 5 4 2 7 7 C 1.53001 * 117.49363 * 188.61031 * 5 4 2 8 8 H 1.09001 * 117.50198 * 0.02562 * 7 5 4 9 9 C 1.50699 * 117.49704 * 145.02212 * 7 5 4 10 10 O 1.21280 * 120.00496 * 21.75548 * 9 7 5 11 11 N 1.34776 * 119.99775 * 201.75396 * 9 7 5 12 12 C 1.46501 * 120.00218 * 179.97438 * 11 9 7 13 13 C 1.52998 * 109.47284 * 180.02562 * 12 11 9 14 14 C 1.53003 * 109.46830 * 180.02562 * 13 12 11 15 15 C 1.50707 * 109.47017 * 179.97438 * 14 13 12 16 16 H 1.07997 * 119.99731 * 0.02562 * 15 14 13 17 17 C 1.37872 * 120.00044 * 180.02562 * 15 14 13 18 18 N 1.31519 * 120.00031 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00214 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47020 * 89.99805 * 19 17 15 21 21 H 1.48501 * 109.47355 * 210.00103 * 19 17 15 22 22 H 1.48503 * 109.46914 * 329.99774 * 19 17 15 23 23 C 1.53002 * 117.49678 * 119.98883 * 5 4 2 24 24 C 1.52995 * 117.49895 * 359.97438 * 23 5 4 25 25 C 1.52997 * 117.49309 * 214.97355 * 23 5 4 26 26 H 1.08996 * 109.46771 * 270.00379 * 1 2 3 27 27 H 1.09001 * 109.46647 * 30.00160 * 1 2 3 28 28 H 1.09000 * 109.46909 * 150.00195 * 1 2 3 29 29 H 1.09002 * 109.46880 * 240.00080 * 3 2 1 30 30 H 1.09001 * 109.46932 * 359.97438 * 3 2 1 31 31 H 1.08995 * 109.47040 * 119.99915 * 3 2 1 32 32 H 1.07999 * 119.99752 * 180.02562 * 4 2 1 33 33 H 0.96998 * 120.00275 * 0.02562 * 11 9 7 34 34 H 1.09004 * 109.46804 * 60.00088 * 12 11 9 35 35 H 1.09004 * 109.46996 * 300.00646 * 12 11 9 36 36 H 1.08996 * 109.47251 * 299.99991 * 13 12 11 37 37 H 1.08992 * 109.47063 * 60.00585 * 13 12 11 38 38 H 1.08996 * 109.47172 * 300.00010 * 14 13 12 39 39 H 1.09004 * 109.47055 * 60.00084 * 14 13 12 40 40 H 0.97004 * 120.00079 * 179.97438 * 18 17 15 41 41 H 1.09004 * 109.47045 * 180.02562 * 24 23 5 42 42 H 1.08998 * 109.47485 * 300.01985 * 24 23 5 43 43 H 1.09003 * 109.47274 * 60.02044 * 24 23 5 44 44 H 1.09000 * 109.47795 * 357.97009 * 25 23 5 45 45 H 1.09001 * 109.46970 * 117.96689 * 25 23 5 46 46 H 1.08998 * 109.47284 * 237.96229 * 25 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2606 1.3051 0.0000 4 6 2.1621 -1.1345 0.0005 5 6 1.4085 -2.4396 0.0005 6 1 0.4060 -2.4037 0.4270 7 6 2.2173 -3.7223 0.2043 8 1 3.2943 -3.6221 0.3388 9 6 1.5667 -4.8394 0.9787 10 8 0.3586 -4.8880 1.0739 11 7 2.3274 -5.7847 1.5654 12 6 1.6951 -6.8705 2.3187 13 6 2.7746 -7.7991 2.8783 14 6 2.1140 -8.9334 3.6645 15 6 3.1773 -9.8485 4.2152 16 1 4.2199 -9.6414 4.0240 17 6 2.8191 -10.9499 4.9632 18 7 1.5495 -11.2017 5.1964 19 14 4.1370 -12.0838 5.6464 20 1 4.5462 -11.6117 6.9937 21 1 3.5987 -13.4640 5.7479 22 1 5.3140 -12.0769 4.7409 23 6 1.6432 -3.3908 -1.1747 24 6 2.6244 -2.9440 -2.2601 25 6 0.4524 -4.2189 -1.6617 26 1 -0.3633 0.0001 1.0276 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3633 -0.8900 -0.5138 29 1 2.8872 1.3628 -0.8900 30 1 1.5522 2.1336 -0.0005 31 1 2.8872 1.3629 0.8899 32 1 3.2421 -1.1345 0.0009 33 1 3.2936 -5.7458 1.4896 34 1 1.0362 -7.4349 1.6587 35 1 1.1142 -6.4521 3.1407 36 1 3.3557 -8.2175 2.0566 37 1 3.4329 -7.2345 3.5384 38 1 1.5327 -8.5154 4.4862 39 1 1.4558 -9.4979 3.0040 40 1 1.2975 -11.9769 5.7224 41 1 2.6917 -3.7142 -3.0285 42 1 2.2728 -2.0144 -2.7075 43 1 3.6079 -2.7851 -1.8178 44 1 -0.4150 -4.0117 -1.0351 45 1 0.2253 -3.9560 -2.6949 46 1 0.6986 -5.2791 -1.6024 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609141974.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:07:00 Heat of formation + Delta-G solvation = -36.021094 kcal Electronic energy + Delta-G solvation = -21283.910489 eV Core-core repulsion = 18173.251771 eV Total energy + Delta-G solvation = -3110.658717 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.36999 -38.07016 -35.81564 -35.19390 -33.28501 -31.24315 -29.92222 -28.20022 -28.06292 -27.25826 -26.46785 -23.82950 -22.14930 -20.68592 -20.04615 -19.13393 -18.13090 -16.63140 -16.42012 -15.61029 -15.27493 -14.90309 -14.73744 -14.44875 -14.31878 -14.11868 -13.76779 -13.50475 -13.16558 -12.72274 -12.67910 -12.55600 -12.29035 -12.26583 -12.10795 -11.85655 -11.82812 -11.70615 -11.53226 -11.01830 -10.90306 -10.72334 -10.60358 -10.52843 -10.02194 -9.85989 -9.78764 -9.35228 -9.11596 -8.71871 -8.67263 -8.37250 -6.01823 -4.04955 1.80101 2.63182 3.30717 3.36175 3.37763 3.40969 3.87110 4.38812 4.44614 4.57203 4.61816 4.71934 4.85760 4.90721 5.01846 5.13574 5.26232 5.33884 5.39091 5.42699 5.44273 5.48019 5.53088 5.64048 5.67269 5.75547 5.78975 5.81339 5.81795 5.85524 5.98637 6.06551 6.17510 6.28939 6.41689 6.53058 6.60929 6.67672 6.85703 7.01355 7.63559 7.76285 7.77519 7.96967 8.37642 8.46804 9.01713 9.59208 11.09475 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.030912 B = 0.002541 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.571644 B =11014.787504 C =11148.278271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.126 4.126 3 C -0.116 4.116 4 C -0.134 4.134 5 C -0.084 4.084 6 H 0.121 0.879 7 C -0.181 4.181 8 H 0.118 0.882 9 C 0.538 3.462 10 O -0.544 6.544 11 N -0.723 5.723 12 C 0.117 3.883 13 C -0.121 4.121 14 C 0.024 3.976 15 C -0.522 4.522 16 H 0.055 0.945 17 C 0.056 3.944 18 N -0.894 5.894 19 Si 0.893 3.107 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.082 4.082 24 C -0.113 4.113 25 C -0.116 4.116 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.110 0.890 33 H 0.398 0.602 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.261 0.739 41 H 0.061 0.939 42 H 0.064 0.936 43 H 0.058 0.942 44 H 0.071 0.929 45 H 0.058 0.942 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.964 22.867 -14.601 27.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.126 4.126 3 C -0.173 4.173 4 C -0.152 4.152 5 C -0.102 4.102 6 H 0.139 0.861 7 C -0.202 4.202 8 H 0.136 0.864 9 C 0.324 3.676 10 O -0.422 6.422 11 N -0.373 5.373 12 C -0.005 4.005 13 C -0.159 4.159 14 C -0.014 4.014 15 C -0.560 4.560 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.533 5.533 19 Si 0.721 3.279 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.083 4.083 24 C -0.170 4.170 25 C -0.173 4.173 26 H 0.086 0.914 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.128 0.872 33 H 0.231 0.769 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.037 0.963 39 H 0.037 0.963 40 H 0.071 0.929 41 H 0.080 0.920 42 H 0.083 0.917 43 H 0.077 0.923 44 H 0.090 0.910 45 H 0.077 0.923 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.965 22.674 -14.429 26.893 hybrid contribution 1.332 -0.788 0.605 1.662 sum 2.297 21.886 -13.824 25.988 Atomic orbital electron populations 1.20931 0.92260 1.02511 1.02214 1.21555 0.95987 0.94737 1.00342 1.20811 0.99799 0.94741 1.01954 1.21915 0.98602 0.91746 1.02956 1.21519 0.99665 0.87410 1.01612 0.86095 1.22610 0.99799 0.97022 1.00784 0.86446 1.19544 0.87025 0.82136 0.78864 1.90669 1.14146 1.76188 1.61171 1.46138 1.10250 1.27146 1.53765 1.21633 0.96811 0.87140 0.94951 1.21883 0.96946 0.97373 0.99651 1.19031 0.96043 0.91547 0.94769 1.21205 0.93056 1.09205 1.32575 0.92655 1.25035 0.95339 0.97814 0.96317 1.69970 1.15498 1.28230 1.39596 0.86578 0.81841 0.80088 0.79382 1.20651 1.21198 1.19898 1.21592 0.98598 0.99960 0.88125 1.21358 0.97436 1.01198 0.97004 1.21389 0.96302 0.98980 1.00659 0.91425 0.92127 0.91248 0.91688 0.92014 0.91656 0.87216 0.76858 0.91843 0.91849 0.92750 0.92758 0.96295 0.96284 0.92926 0.91952 0.91750 0.92302 0.91021 0.92291 0.92174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.99 9.21 36.01 0.33 -0.66 16 2 C -0.13 -1.06 6.05 -101.06 -0.61 -1.67 16 3 C -0.12 -0.76 10.05 36.01 0.36 -0.39 16 4 C -0.13 -1.21 8.32 -36.02 -0.30 -1.51 16 5 C -0.08 -0.90 4.19 -91.77 -0.38 -1.28 16 6 H 0.12 1.50 6.34 -51.93 -0.33 1.17 16 7 C -0.18 -2.06 5.54 -91.77 -0.51 -2.57 16 8 H 0.12 1.10 8.05 -51.93 -0.42 0.68 16 9 C 0.54 8.14 7.01 -10.99 -0.08 8.07 16 10 O -0.54 -10.05 14.69 5.56 0.08 -9.97 16 11 N -0.72 -10.71 5.56 -60.29 -0.33 -11.05 16 12 C 0.12 2.11 5.67 -4.04 -0.02 2.09 16 13 C -0.12 -2.39 5.27 -26.73 -0.14 -2.53 16 14 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 15 C -0.52 -14.69 9.11 -34.44 -0.31 -15.00 16 16 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.89 -26.98 13.29 55.43 0.74 -26.25 16 19 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 23 C -0.08 -0.84 2.70 -154.51 -0.42 -1.26 16 24 C -0.11 -0.90 8.80 37.16 0.33 -0.57 16 25 C -0.12 -1.31 8.43 37.16 0.31 -1.00 16 26 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.41 8.05 -51.93 -0.42 -0.01 16 28 H 0.07 0.60 6.49 -51.93 -0.34 0.26 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.35 7.94 -51.93 -0.41 -0.06 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.11 0.89 8.05 -52.49 -0.42 0.46 16 33 H 0.40 4.81 8.47 -40.82 -0.35 4.46 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 36 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 38 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 41 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.42 7.90 -51.93 -0.41 0.01 16 44 H 0.07 0.92 7.10 -51.93 -0.37 0.55 16 45 H 0.06 0.54 8.03 -51.93 -0.42 0.13 16 46 H 0.06 0.75 7.97 -51.93 -0.41 0.34 16 LS Contribution 375.10 15.07 5.65 5.65 Total: -1.00 -31.75 375.10 -9.04 -40.80 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -8.48 Total: 0.55 kcal Atomic # 6 Polarization: -14.62 SS G_CDS: -1.68 Total: -16.30 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: 0.40 Total: -37.30 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.08 Total: -9.97 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.75 -9.04 -40.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609141974.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.778 kcal (2) G-P(sol) polarization free energy of solvation -31.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds