Wall clock time and date at job start Tue Mar 31 2020 02:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.50698 * 120.00036 * 2 1 4 4 C 1.31003 * 119.99923 * 179.97438 * 2 1 3 5 5 C 1.50698 * 120.00041 * 0.02562 * 4 2 1 6 6 H 1.09001 * 115.56375 * 25.69677 * 5 4 2 7 7 C 1.53008 * 117.49951 * 171.39049 * 5 4 2 8 8 H 1.08991 * 117.49696 * 215.00515 * 7 5 4 9 9 C 1.50703 * 117.49530 * 359.97438 * 7 5 4 10 10 O 1.21277 * 120.00209 * 311.67953 * 9 7 5 11 11 N 1.34776 * 119.99216 * 131.67809 * 9 7 5 12 12 C 1.46503 * 119.99691 * 180.02562 * 11 9 7 13 13 C 1.52994 * 109.47415 * 179.97438 * 12 11 9 14 14 C 1.53005 * 109.47464 * 179.97438 * 13 12 11 15 15 C 1.50696 * 109.47117 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00319 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00012 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99854 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00160 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46946 * 60.00724 * 19 17 15 21 21 H 1.48493 * 109.47257 * 300.00217 * 19 17 15 22 22 H 1.48501 * 109.47025 * 179.97438 * 19 17 15 23 23 C 1.53001 * 60.03185 * 107.49722 * 7 5 4 24 24 C 1.53006 * 117.49653 * 107.47639 * 23 7 5 25 25 C 1.53002 * 117.50134 * 252.47242 * 23 7 5 26 26 H 1.08998 * 109.47134 * 239.99803 * 1 2 3 27 27 H 1.09004 * 109.47313 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47163 * 120.00427 * 1 2 3 29 29 H 1.08999 * 109.47186 * 269.99804 * 3 2 1 30 30 H 1.08997 * 109.47234 * 29.99647 * 3 2 1 31 31 H 1.09005 * 109.46990 * 149.99710 * 3 2 1 32 32 H 1.08003 * 120.00016 * 180.02562 * 4 2 1 33 33 H 0.96995 * 120.00759 * 0.02562 * 11 9 7 34 34 H 1.09006 * 109.47133 * 59.99546 * 12 11 9 35 35 H 1.09001 * 109.47190 * 299.99892 * 12 11 9 36 36 H 1.09006 * 109.47261 * 59.99722 * 13 12 11 37 37 H 1.09001 * 109.47417 * 299.99930 * 13 12 11 38 38 H 1.09002 * 109.46578 * 60.00188 * 14 13 12 39 39 H 1.08995 * 109.46772 * 300.00174 * 14 13 12 40 40 H 0.97001 * 119.99616 * 359.97438 * 18 17 15 41 41 H 1.09002 * 109.46726 * 111.38829 * 24 23 7 42 42 H 1.08995 * 109.46984 * 231.39224 * 24 23 7 43 43 H 1.09002 * 109.46613 * 351.39486 * 24 23 7 44 44 H 1.09003 * 109.46563 * 53.94769 * 25 23 7 45 45 H 1.08996 * 109.47055 * 173.94983 * 25 23 7 46 46 H 1.08999 * 109.47205 * 293.95508 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2604 1.3051 0.0000 4 6 2.1619 -1.1345 0.0005 5 6 1.4084 -2.4396 0.0005 6 1 0.4061 -2.4040 -0.4263 7 6 2.2174 -3.7225 -0.2021 8 1 1.7474 -4.5305 -0.7625 9 6 3.7066 -3.5840 -0.3869 10 8 4.1471 -2.7765 -1.1772 11 7 4.5488 -4.3577 0.3262 12 6 5.9966 -4.2229 0.1470 13 6 6.7185 -5.2082 1.0682 14 6 8.2305 -5.0678 0.8806 15 6 8.9416 -6.0380 1.7884 16 1 8.3721 -6.6898 2.4342 17 6 10.3192 -6.0942 1.7937 18 7 11.0127 -5.3007 1.0068 19 14 11.2006 -7.2973 2.9185 20 1 10.7865 -8.6833 2.5826 21 1 10.8481 -7.0037 4.3308 22 1 12.6681 -7.1617 2.7356 23 6 1.6424 -3.3912 1.1765 24 6 0.4513 -4.2193 1.6628 25 6 2.6235 -2.9454 2.2627 26 1 -0.3633 -0.5139 0.8899 27 1 -0.3634 1.0277 -0.0005 28 1 -0.3633 -0.5139 -0.8899 29 1 2.4421 1.6197 -1.0276 30 1 1.6714 2.0647 0.5138 31 1 3.2129 1.1747 0.5139 32 1 3.2420 -1.1345 0.0009 33 1 4.1965 -5.0039 0.9581 34 1 6.3001 -3.2056 0.3944 35 1 6.2559 -4.4374 -0.8897 36 1 6.4151 -6.2256 0.8212 37 1 6.4592 -4.9933 2.1049 38 1 8.5343 -4.0505 1.1274 39 1 8.4895 -5.2830 -0.1561 40 1 10.5549 -4.6762 0.4225 41 1 0.7619 -4.8468 2.4982 42 1 -0.3472 -3.5519 1.9868 43 1 0.0908 -4.8494 0.8496 44 1 3.2127 -2.1044 1.8971 45 1 2.0691 -2.6420 3.1507 46 1 3.2877 -3.7723 2.5139 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609141976.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:07:07 Heat of formation + Delta-G solvation = -37.619058 kcal Electronic energy + Delta-G solvation = -21806.568951 eV Core-core repulsion = 18695.840941 eV Total energy + Delta-G solvation = -3110.728010 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.50322 -37.98884 -35.71433 -35.49017 -33.54648 -31.11788 -29.95647 -28.10856 -27.97424 -27.31847 -26.17458 -23.69943 -22.26994 -20.90813 -20.17373 -19.20925 -18.05856 -16.82219 -16.43877 -15.88200 -15.53163 -15.02371 -14.53494 -14.29215 -14.12243 -13.77985 -13.73676 -13.56048 -13.26053 -12.98075 -12.79868 -12.59755 -12.51168 -12.45376 -12.08895 -11.80521 -11.71080 -11.62704 -11.59458 -10.96901 -10.89439 -10.79275 -10.56581 -10.24846 -10.13282 -10.01230 -9.90761 -9.51188 -8.80581 -8.59509 -8.54386 -8.34355 -6.37560 -4.07357 1.97041 2.73760 3.29552 3.42744 3.44662 3.57765 3.63619 4.28945 4.49293 4.53584 4.63537 4.78259 4.84676 4.89980 5.08096 5.19829 5.32982 5.35727 5.38624 5.39630 5.48424 5.53846 5.60401 5.63253 5.64078 5.67017 5.69949 5.72562 5.76915 5.83763 5.91802 6.02694 6.04552 6.15178 6.40710 6.46882 6.62930 6.73624 6.83225 6.85408 7.35070 7.47644 7.70104 8.17598 8.39537 8.43922 8.86391 9.65292 11.03183 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.025092 B = 0.003045 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.607676 B = 9192.121309 C = 9670.373070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.138 4.138 3 C -0.114 4.114 4 C -0.125 4.125 5 C -0.083 4.083 6 H 0.114 0.886 7 C -0.175 4.175 8 H 0.130 0.870 9 C 0.541 3.459 10 O -0.539 6.539 11 N -0.721 5.721 12 C 0.116 3.884 13 C -0.113 4.113 14 C 0.011 3.989 15 C -0.604 4.604 16 H 0.049 0.951 17 C 0.014 3.986 18 N -0.912 5.912 19 Si 1.069 2.931 20 H -0.288 1.288 21 H -0.288 1.288 22 H -0.282 1.282 23 C -0.100 4.100 24 C -0.116 4.116 25 C -0.123 4.123 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.120 0.880 33 H 0.399 0.601 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.009 0.991 39 H 0.010 0.990 40 H 0.269 0.731 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.059 0.941 44 H 0.063 0.937 45 H 0.064 0.936 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.465 6.477 0.878 25.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.138 4.138 3 C -0.171 4.171 4 C -0.142 4.142 5 C -0.102 4.102 6 H 0.132 0.868 7 C -0.196 4.196 8 H 0.148 0.852 9 C 0.327 3.673 10 O -0.416 6.416 11 N -0.372 5.372 12 C -0.007 4.007 13 C -0.151 4.151 14 C -0.026 4.026 15 C -0.642 4.642 16 H 0.067 0.933 17 C -0.190 4.190 18 N -0.548 5.548 19 Si 0.897 3.103 20 H -0.215 1.215 21 H -0.214 1.214 22 H -0.207 1.207 23 C -0.101 4.101 24 C -0.173 4.173 25 C -0.180 4.180 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.138 0.862 33 H 0.233 0.767 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.028 0.972 39 H 0.028 0.972 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -22.615 6.529 0.766 23.551 hybrid contribution -1.670 0.097 -0.336 1.706 sum -24.285 6.627 0.430 25.176 Atomic orbital electron populations 1.20800 0.92594 1.01915 1.01717 1.21487 0.95577 0.94928 1.01854 1.20802 0.99644 0.94643 1.01981 1.22117 0.99670 0.91368 1.01092 1.21414 0.98776 0.88743 1.01236 0.86790 1.22607 0.92954 1.02044 1.01993 0.85208 1.19565 0.86959 0.80528 0.80268 1.90691 1.78410 1.36249 1.36228 1.46236 1.07473 1.40349 1.43120 1.21631 0.77754 1.00631 1.00697 1.21741 0.98543 0.97153 0.97666 1.19150 0.89338 0.97139 0.97021 1.22015 0.93888 1.22847 1.25460 0.93304 1.25871 0.94977 0.99421 0.98708 1.70781 1.39148 1.21568 1.23298 0.83540 0.76217 0.75193 0.75302 1.21452 1.21441 1.20735 1.21752 0.98719 1.00592 0.88995 1.21384 0.95598 0.98892 1.01448 1.21456 0.97772 1.01721 0.97001 0.91740 0.92418 0.91861 0.91605 0.92123 0.91962 0.86222 0.76717 0.91952 0.91908 0.92582 0.92578 0.97229 0.97222 0.92023 0.91576 0.91865 0.92191 0.91819 0.91719 0.91700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 8.76 36.00 0.32 -0.61 16 2 C -0.14 -1.47 6.05 -101.07 -0.61 -2.08 16 3 C -0.11 -1.10 9.97 36.00 0.36 -0.75 16 4 C -0.12 -1.53 6.76 -36.03 -0.24 -1.77 16 5 C -0.08 -0.87 5.11 -91.73 -0.47 -1.34 16 6 H 0.11 1.02 6.80 -51.93 -0.35 0.67 16 7 C -0.18 -1.96 5.78 -91.77 -0.53 -2.49 16 8 H 0.13 1.23 8.05 -51.93 -0.42 0.82 16 9 C 0.54 8.10 5.76 -10.98 -0.06 8.04 16 10 O -0.54 -10.17 15.12 5.56 0.08 -10.09 16 11 N -0.72 -10.41 4.93 -60.29 -0.30 -10.71 16 12 C 0.12 2.05 5.67 -4.04 -0.02 2.02 16 13 C -0.11 -2.24 5.27 -26.73 -0.14 -2.38 16 14 C 0.01 0.28 4.28 -27.88 -0.12 0.16 16 15 C -0.60 -17.16 9.11 -34.44 -0.31 -17.47 16 16 H 0.05 1.35 7.74 -52.49 -0.41 0.94 16 17 C 0.01 0.41 5.46 -17.82 -0.10 0.31 16 18 N -0.91 -28.21 13.65 55.43 0.76 -27.45 16 19 Si 1.07 25.26 29.90 -169.99 -5.08 20.18 16 20 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 C -0.10 -0.93 2.70 -154.46 -0.42 -1.35 16 24 C -0.12 -0.81 9.84 37.16 0.37 -0.44 16 25 C -0.12 -1.24 8.44 37.16 0.31 -0.93 16 26 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 27 H 0.06 0.41 7.94 -51.93 -0.41 0.00 16 28 H 0.06 0.49 7.54 -51.93 -0.39 0.10 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.49 8.05 -51.93 -0.42 0.07 16 31 H 0.06 0.64 8.06 -51.93 -0.42 0.22 16 32 H 0.12 1.80 5.82 -52.48 -0.31 1.50 16 33 H 0.40 4.81 7.80 -40.82 -0.32 4.49 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.01 0.25 8.01 -51.93 -0.42 -0.16 16 39 H 0.01 0.25 8.01 -51.93 -0.42 -0.16 16 40 H 0.27 8.31 7.22 -40.82 -0.29 8.01 16 41 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 42 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.06 0.37 7.90 -51.93 -0.41 -0.04 16 44 H 0.06 0.76 6.11 -51.93 -0.32 0.45 16 45 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 46 H 0.06 0.66 7.13 -51.93 -0.37 0.29 16 LS Contribution 369.21 15.07 5.56 5.56 Total: -1.00 -32.68 369.21 -8.91 -41.59 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -8.26 Total: 2.00 kcal Atomic # 6 Polarization: -19.40 SS G_CDS: -1.68 Total: -21.07 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: 0.46 Total: -38.16 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.08 Total: -10.09 kcal Atomic # 14 Polarization: 25.26 SS G_CDS: -5.08 Total: 20.18 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.68 -8.91 -41.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609141976.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.967 kcal (2) G-P(sol) polarization free energy of solvation -32.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds