Wall clock time and date at job start Tue Mar 31 2020 02:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.50698 * 120.00036 * 2 1 4 4 C 1.31003 * 119.99923 * 179.97438 * 2 1 3 5 5 C 1.50698 * 120.00041 * 0.02562 * 4 2 1 6 6 H 1.09001 * 115.56375 * 25.69677 * 5 4 2 7 7 C 1.53008 * 117.49951 * 171.39049 * 5 4 2 8 8 H 1.08991 * 117.49696 * 215.00515 * 7 5 4 9 9 C 1.50703 * 117.49530 * 359.97438 * 7 5 4 10 10 O 1.21277 * 120.00209 * 311.67953 * 9 7 5 11 11 N 1.34776 * 119.99216 * 131.67809 * 9 7 5 12 12 C 1.46503 * 119.99691 * 180.02562 * 11 9 7 13 13 C 1.52994 * 109.47415 * 179.97438 * 12 11 9 14 14 C 1.53005 * 109.47464 * 179.97438 * 13 12 11 15 15 C 1.50696 * 109.47117 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00319 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00012 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99854 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00160 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46946 * 60.00724 * 19 17 15 21 21 H 1.48493 * 109.47257 * 300.00217 * 19 17 15 22 22 H 1.48501 * 109.47025 * 179.97438 * 19 17 15 23 23 C 1.53001 * 60.03185 * 107.49722 * 7 5 4 24 24 C 1.53006 * 117.49653 * 107.47639 * 23 7 5 25 25 C 1.53002 * 117.50134 * 252.47242 * 23 7 5 26 26 H 1.08998 * 109.47134 * 239.99803 * 1 2 3 27 27 H 1.09004 * 109.47313 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47163 * 120.00427 * 1 2 3 29 29 H 1.08999 * 109.47186 * 269.99804 * 3 2 1 30 30 H 1.08997 * 109.47234 * 29.99647 * 3 2 1 31 31 H 1.09005 * 109.46990 * 149.99710 * 3 2 1 32 32 H 1.08003 * 120.00016 * 180.02562 * 4 2 1 33 33 H 0.96995 * 120.00759 * 0.02562 * 11 9 7 34 34 H 1.09006 * 109.47133 * 59.99546 * 12 11 9 35 35 H 1.09001 * 109.47190 * 299.99892 * 12 11 9 36 36 H 1.09006 * 109.47261 * 59.99722 * 13 12 11 37 37 H 1.09001 * 109.47417 * 299.99930 * 13 12 11 38 38 H 1.09002 * 109.46578 * 60.00188 * 14 13 12 39 39 H 1.08995 * 109.46772 * 300.00174 * 14 13 12 40 40 H 0.97001 * 119.99616 * 359.97438 * 18 17 15 41 41 H 1.09002 * 109.46726 * 111.38829 * 24 23 7 42 42 H 1.08995 * 109.46984 * 231.39224 * 24 23 7 43 43 H 1.09002 * 109.46613 * 351.39486 * 24 23 7 44 44 H 1.09003 * 109.46563 * 53.94769 * 25 23 7 45 45 H 1.08996 * 109.47055 * 173.94983 * 25 23 7 46 46 H 1.08999 * 109.47205 * 293.95508 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2604 1.3051 0.0000 4 6 2.1619 -1.1345 0.0005 5 6 1.4084 -2.4396 0.0005 6 1 0.4061 -2.4040 -0.4263 7 6 2.2174 -3.7225 -0.2021 8 1 1.7474 -4.5305 -0.7625 9 6 3.7066 -3.5840 -0.3869 10 8 4.1471 -2.7765 -1.1772 11 7 4.5488 -4.3577 0.3262 12 6 5.9966 -4.2229 0.1470 13 6 6.7185 -5.2082 1.0682 14 6 8.2305 -5.0678 0.8806 15 6 8.9416 -6.0380 1.7884 16 1 8.3721 -6.6898 2.4342 17 6 10.3192 -6.0942 1.7937 18 7 11.0127 -5.3007 1.0068 19 14 11.2006 -7.2973 2.9185 20 1 10.7865 -8.6833 2.5826 21 1 10.8481 -7.0037 4.3308 22 1 12.6681 -7.1617 2.7356 23 6 1.6424 -3.3912 1.1765 24 6 0.4513 -4.2193 1.6628 25 6 2.6235 -2.9454 2.2627 26 1 -0.3633 -0.5139 0.8899 27 1 -0.3634 1.0277 -0.0005 28 1 -0.3633 -0.5139 -0.8899 29 1 2.4421 1.6197 -1.0276 30 1 1.6714 2.0647 0.5138 31 1 3.2129 1.1747 0.5139 32 1 3.2420 -1.1345 0.0009 33 1 4.1965 -5.0039 0.9581 34 1 6.3001 -3.2056 0.3944 35 1 6.2559 -4.4374 -0.8897 36 1 6.4151 -6.2256 0.8212 37 1 6.4592 -4.9933 2.1049 38 1 8.5343 -4.0505 1.1274 39 1 8.4895 -5.2830 -0.1561 40 1 10.5549 -4.6762 0.4225 41 1 0.7619 -4.8468 2.4982 42 1 -0.3472 -3.5519 1.9868 43 1 0.0908 -4.8494 0.8496 44 1 3.2127 -2.1044 1.8971 45 1 2.0691 -2.6420 3.1507 46 1 3.2877 -3.7723 2.5139 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609141976.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:07:06 Heat of formation + Delta-G solvation = -56.185934 kcal Electronic energy + Delta-G solvation = -21807.374071 eV Core-core repulsion = 18695.840941 eV Total energy + Delta-G solvation = -3111.533131 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.54198 -39.05856 -37.13171 -36.51647 -35.44566 -32.91943 -30.70552 -28.97261 -28.75407 -28.48429 -27.45575 -25.35098 -23.71682 -22.56621 -21.20678 -20.21185 -18.95698 -18.91614 -17.51688 -16.98544 -16.87499 -16.25971 -15.64530 -15.57421 -15.32977 -15.06774 -14.91215 -14.67786 -14.54923 -14.10559 -13.74815 -13.64854 -13.54369 -13.30795 -13.21353 -13.11498 -12.74457 -12.65239 -12.59113 -12.47101 -12.29604 -12.08812 -11.88646 -11.83606 -11.71011 -11.36911 -11.10391 -10.72725 -10.60381 -10.56214 -10.16051 -9.39015 -8.70795 -6.42096 1.12196 1.52832 1.56332 1.61722 1.80679 2.12506 2.57347 2.71849 3.14627 3.47360 3.71932 3.73216 3.96494 4.04744 4.08532 4.09534 4.09652 4.26708 4.37268 4.41250 4.64926 4.66825 4.68872 4.73689 4.74196 4.82370 4.84259 4.92369 4.94121 4.94546 5.03951 5.04526 5.07984 5.14467 5.21243 5.29317 5.30580 5.39491 5.43632 5.45134 5.78063 5.95349 6.00563 6.16101 6.51893 6.54609 7.20997 7.41306 8.69998 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.025092 B = 0.003045 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.607676 B = 9192.121309 C = 9670.373070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.133 4.133 3 C -0.119 4.119 4 C -0.151 4.151 5 C -0.083 4.083 6 H 0.137 0.863 7 C -0.186 4.186 8 H 0.154 0.846 9 C 0.539 3.461 10 O -0.584 6.584 11 N -0.710 5.710 12 C 0.131 3.869 13 C -0.094 4.094 14 C 0.009 3.991 15 C -0.618 4.618 16 H 0.058 0.942 17 C -0.043 4.043 18 N -0.940 5.940 19 Si 1.120 2.880 20 H -0.266 1.266 21 H -0.266 1.266 22 H -0.286 1.286 23 C -0.080 4.080 24 C -0.113 4.113 25 C -0.126 4.126 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.046 0.954 32 H 0.081 0.919 33 H 0.414 0.586 34 H 0.045 0.955 35 H 0.047 0.953 36 H 0.068 0.932 37 H 0.067 0.933 38 H -0.013 1.013 39 H -0.012 1.012 40 H 0.254 0.746 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.072 0.928 44 H 0.036 0.964 45 H 0.080 0.920 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.482 5.162 2.413 28.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.133 4.133 3 C -0.175 4.175 4 C -0.169 4.169 5 C -0.101 4.101 6 H 0.155 0.845 7 C -0.206 4.206 8 H 0.172 0.828 9 C 0.327 3.673 10 O -0.464 6.464 11 N -0.362 5.362 12 C 0.006 3.994 13 C -0.132 4.132 14 C -0.029 4.029 15 C -0.656 4.656 16 H 0.077 0.923 17 C -0.240 4.240 18 N -0.577 5.577 19 Si 0.940 3.060 20 H -0.191 1.191 21 H -0.191 1.191 22 H -0.212 1.212 23 C -0.080 4.080 24 C -0.170 4.170 25 C -0.183 4.183 26 H 0.094 0.906 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.100 0.900 31 H 0.065 0.935 32 H 0.099 0.901 33 H 0.251 0.749 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.006 0.994 39 H 0.006 0.994 40 H 0.063 0.937 41 H 0.091 0.909 42 H 0.095 0.905 43 H 0.091 0.909 44 H 0.055 0.945 45 H 0.099 0.901 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -25.683 5.202 2.317 26.307 hybrid contribution -0.720 0.614 -0.839 1.264 sum -26.403 5.816 1.478 27.076 Atomic orbital electron populations 1.20834 0.90195 1.03121 1.02573 1.21821 0.97311 0.94445 0.99730 1.20867 0.99365 0.95203 1.02083 1.21985 0.98035 0.93239 1.03614 1.21532 0.99097 0.87467 1.02053 0.84549 1.22641 0.89875 1.03607 1.04489 0.82847 1.20282 0.88694 0.79242 0.79045 1.90671 1.79541 1.38009 1.38195 1.46032 1.05861 1.40787 1.43508 1.21191 0.79869 0.99068 0.99238 1.21465 0.94706 0.98271 0.98729 1.19108 0.93230 0.95330 0.95241 1.22481 0.94484 1.23052 1.25564 0.92331 1.27548 0.96662 1.00386 0.99384 1.70923 1.39378 1.22784 1.24665 0.82911 0.74760 0.73900 0.74384 1.19123 1.19105 1.21172 1.21833 0.98821 0.99676 0.87692 1.21423 0.94489 0.98943 1.02108 1.21478 0.98050 1.00749 0.97981 0.90580 0.91145 0.91069 0.91586 0.90041 0.93461 0.90110 0.74942 0.93623 0.93421 0.91369 0.91397 0.99432 0.99385 0.93666 0.90867 0.90544 0.90915 0.94463 0.90091 0.91762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.52 8.76 71.23 0.62 -0.89 16 2 C -0.13 -2.73 6.05 -16.49 -0.10 -2.83 16 3 C -0.12 -2.30 9.97 71.24 0.71 -1.59 16 4 C -0.15 -3.73 6.76 25.64 0.17 -3.56 16 5 C -0.08 -1.61 5.11 -11.51 -0.06 -1.67 16 6 H 0.14 2.01 6.80 -2.39 -0.02 2.00 16 7 C -0.19 -3.88 5.78 -11.54 -0.07 -3.94 16 8 H 0.15 2.49 8.05 -2.39 -0.02 2.47 16 9 C 0.54 16.36 5.76 87.66 0.51 16.86 16 10 O -0.58 -23.18 15.12 -3.02 -0.05 -23.23 16 11 N -0.71 -20.50 4.93 -463.06 -2.28 -22.78 16 12 C 0.13 4.78 5.67 86.38 0.49 5.27 16 13 C -0.09 -3.72 5.27 30.59 0.16 -3.56 16 14 C 0.01 0.45 4.28 29.85 0.13 0.58 16 15 C -0.62 -35.25 9.11 25.60 0.23 -35.01 16 16 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 17 C -0.04 -2.51 5.46 84.65 0.46 -2.05 16 18 N -0.94 -59.64 13.65 21.45 0.29 -59.34 16 19 Si 1.12 50.07 29.90 68.60 2.05 52.12 16 20 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 21 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 22 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 23 C -0.08 -1.30 2.70 -52.15 -0.14 -1.44 16 24 C -0.11 -1.12 9.84 71.98 0.71 -0.41 16 25 C -0.13 -2.41 8.44 71.98 0.61 -1.80 16 26 H 0.08 0.90 8.08 -2.39 -0.02 0.88 16 27 H 0.07 0.79 7.94 -2.39 -0.02 0.78 16 28 H 0.07 0.89 7.54 -2.39 -0.02 0.88 16 29 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.08 1.21 8.05 -2.39 -0.02 1.19 16 31 H 0.05 1.03 8.06 -2.38 -0.02 1.02 16 32 H 0.08 2.64 5.82 -2.91 -0.02 2.62 16 33 H 0.41 9.42 7.80 -92.71 -0.72 8.70 16 34 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 35 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.07 2.55 8.14 -2.38 -0.02 2.53 16 37 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 38 H -0.01 -0.71 8.01 -2.39 -0.02 -0.73 16 39 H -0.01 -0.69 8.01 -2.39 -0.02 -0.71 16 40 H 0.25 16.41 7.22 -92.71 -0.67 15.74 16 41 H 0.07 0.66 8.09 -2.39 -0.02 0.64 16 42 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.07 0.58 7.90 -2.39 -0.02 0.56 16 44 H 0.04 0.91 6.11 -2.39 -0.01 0.90 16 45 H 0.08 1.27 8.13 -2.39 -0.02 1.25 16 46 H 0.06 1.22 7.13 -2.39 -0.02 1.20 16 Total: -1.00 -73.56 369.21 4.77 -68.80 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: 0.31 Total: 20.48 kcal Atomic # 6 Polarization: -40.48 SS G_CDS: 4.44 Total: -36.05 kcal Atomic # 7 Polarization: -80.14 SS G_CDS: -1.99 Total: -82.12 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.05 Total: -23.23 kcal Atomic # 14 Polarization: 50.07 SS G_CDS: 2.05 Total: 52.12 kcal Total: -73.56 4.77 -68.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609141976.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.610 kcal (2) G-P(sol) polarization free energy of solvation -73.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds