Wall clock time and date at job start Tue Mar 31 2020 01:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47085 * 2 1 4 4 C 1.52992 * 109.47705 * 120.00526 * 2 1 3 5 5 C 1.52997 * 109.47482 * 174.99884 * 4 2 1 6 6 N 1.46505 * 109.47212 * 179.97438 * 5 4 2 7 7 C 1.46493 * 119.99899 * 270.00188 * 6 5 4 8 8 C 1.50695 * 109.47443 * 90.00099 * 7 6 5 9 9 H 1.08001 * 120.00056 * 359.97438 * 8 7 6 10 10 C 1.37877 * 120.00480 * 179.97438 * 8 7 6 11 11 N 1.31505 * 120.00447 * 180.02562 * 10 8 7 12 12 Si 1.86805 * 119.99662 * 359.97438 * 10 8 7 13 13 H 1.48502 * 109.46974 * 90.00094 * 12 10 8 14 14 H 1.48500 * 109.47191 * 210.00006 * 12 10 8 15 15 H 1.48501 * 109.47289 * 330.00624 * 12 10 8 16 16 C 1.34773 * 119.99455 * 90.00023 * 6 5 4 17 17 O 1.21282 * 120.00692 * 0.02562 * 16 6 5 18 18 C 1.50705 * 119.99759 * 180.02562 * 16 6 5 19 19 H 1.09000 * 115.56031 * 34.25840 * 18 16 6 20 20 C 1.53123 * 117.51240 * 248.46371 * 18 16 6 21 21 C 1.52455 * 117.51422 * 180.02562 * 18 16 6 22 22 C 1.53257 * 128.58739 * 349.83981 * 21 18 16 23 23 C 1.53886 * 86.88407 * 194.88978 * 22 21 18 24 24 C 1.53256 * 128.58275 * 225.04557 * 21 18 16 25 25 H 1.09000 * 109.46929 * 299.99211 * 1 2 3 26 26 H 1.09000 * 109.47812 * 59.99192 * 1 2 3 27 27 H 1.09001 * 109.46974 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46661 * 240.00336 * 2 1 3 29 29 H 1.09004 * 109.47334 * 300.00556 * 3 2 1 30 30 H 1.09000 * 109.46593 * 60.00583 * 3 2 1 31 31 H 1.08998 * 109.46891 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47103 * 54.99637 * 4 2 1 33 33 H 1.08998 * 109.46862 * 295.00449 * 4 2 1 34 34 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 35 35 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 36 36 H 1.09006 * 109.46911 * 209.99921 * 7 6 5 37 37 H 1.08996 * 109.47170 * 329.99434 * 7 6 5 38 38 H 0.97003 * 120.00287 * 179.97438 * 11 10 8 39 39 H 1.09005 * 117.51351 * 359.97438 * 20 18 16 40 40 H 1.08999 * 117.51531 * 145.09763 * 20 18 16 41 41 H 1.08996 * 113.64747 * 309.39233 * 22 21 18 42 42 H 1.08999 * 113.64266 * 80.39366 * 22 21 18 43 43 H 1.08995 * 113.59390 * 270.38955 * 23 22 21 44 44 H 1.09004 * 113.58403 * 139.56958 * 23 22 21 45 45 H 1.09003 * 113.64802 * 279.60455 * 24 21 18 46 46 H 1.08999 * 113.65024 * 50.52592 * 24 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5649 -0.8311 1.1877 6 7 4.0534 -1.5213 2.3841 7 6 4.4018 -0.7531 3.5819 8 6 3.1870 -0.6183 4.4633 9 1 2.2489 -1.0602 4.1613 10 6 3.2729 0.0692 5.6553 11 7 2.2129 0.1865 6.4247 12 14 4.8955 0.8330 6.1781 13 1 4.9796 2.2213 5.6576 14 1 4.9777 0.8544 7.6607 15 1 6.0192 0.0306 5.6315 16 6 4.1821 -2.8628 2.3827 17 8 3.8940 -3.4987 1.3909 18 6 4.6840 -3.5729 3.6136 19 1 4.3873 -3.1315 4.5650 20 6 6.0653 -4.2293 3.5377 21 6 4.8083 -5.0910 3.5494 22 6 4.2950 -6.0472 2.4673 23 6 4.5328 -7.1837 3.4772 24 6 4.3717 -6.1305 4.5875 25 1 -0.3633 0.5137 0.8901 26 1 -0.3635 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8932 -0.5138 -0.8901 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9562 0.8901 31 1 3.1300 1.4425 -0.0005 32 1 1.6055 -1.7199 1.2950 33 1 1.7517 -0.1585 2.1368 34 1 3.9995 0.1675 1.1418 35 1 3.8532 -1.3940 0.2999 36 1 5.1913 -1.2697 4.1279 37 1 4.7505 0.2373 3.2896 38 1 2.2734 0.6698 7.2635 39 1 6.6106 -4.1478 2.5973 40 1 6.6777 -4.2196 4.4393 41 1 3.2450 -5.8990 2.2152 42 1 4.9391 -6.1004 1.5896 43 1 5.5337 -7.6121 3.4242 44 1 3.7476 -7.9397 3.4760 45 1 5.0774 -6.2505 5.4096 46 1 3.3435 -6.0045 4.9268 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610738681.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:46:14 Heat of formation + Delta-G solvation = -22.818765 kcal Electronic energy + Delta-G solvation = -22881.502987 eV Core-core repulsion = 19771.416766 eV Total energy + Delta-G solvation = -3110.086222 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.37470 -39.60938 -37.75275 -36.34980 -34.53471 -34.46695 -30.97776 -29.30220 -28.01984 -26.56762 -25.85035 -24.41462 -23.91964 -23.16067 -20.91163 -20.03905 -19.04611 -18.96811 -18.09392 -17.16104 -16.33871 -16.13594 -16.09153 -15.99094 -15.57215 -15.10659 -14.73896 -14.61866 -14.17474 -13.81860 -13.67461 -13.61614 -13.28244 -13.14891 -12.98752 -12.92890 -12.72094 -12.51628 -12.39891 -12.25974 -12.22779 -11.94988 -11.73441 -11.72782 -11.50843 -11.38135 -11.22667 -10.97879 -10.81015 -10.62046 -10.47024 -9.39916 -8.28123 -6.34542 1.39146 1.40432 1.50283 1.61728 2.27910 2.34799 2.83103 3.05437 3.42386 3.75721 3.80322 3.91186 3.93715 3.95093 4.01518 4.07961 4.17828 4.36823 4.54209 4.59921 4.62503 4.68625 4.69082 4.77475 4.81986 4.83689 4.85842 4.86485 4.90390 4.91120 5.02766 5.08012 5.09808 5.12158 5.18014 5.18860 5.29993 5.42395 5.45081 5.46401 5.54623 5.55060 5.77854 6.21040 6.62596 6.72588 7.26588 7.38855 8.88133 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.010444 B = 0.007227 C = 0.004868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2680.315287 B = 3873.166774 C = 5750.468879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.089 4.089 3 C -0.144 4.144 4 C -0.117 4.117 5 C 0.122 3.878 6 N -0.596 5.596 7 C 0.219 3.781 8 C -0.531 4.531 9 H 0.029 0.971 10 C 0.018 3.982 11 N -0.944 5.944 12 Si 0.938 3.062 13 H -0.265 1.265 14 H -0.286 1.286 15 H -0.236 1.236 16 C 0.543 3.457 17 O -0.584 6.584 18 C -0.197 4.197 19 H 0.113 0.887 20 C -0.101 4.101 21 C -0.139 4.139 22 C -0.086 4.086 23 C -0.121 4.121 24 C -0.098 4.098 25 H 0.042 0.958 26 H 0.075 0.925 27 H 0.045 0.955 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.042 0.958 31 H 0.060 0.940 32 H 0.030 0.970 33 H 0.047 0.953 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.047 0.953 37 H 0.042 0.958 38 H 0.267 0.733 39 H 0.101 0.899 40 H 0.127 0.873 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.099 0.901 44 H 0.079 0.921 45 H 0.086 0.914 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.128 -5.523 -8.159 12.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.108 4.108 3 C -0.201 4.201 4 C -0.156 4.156 5 C 0.000 4.000 6 N -0.325 5.325 7 C 0.097 3.903 8 C -0.570 4.570 9 H 0.047 0.953 10 C -0.180 4.180 11 N -0.584 5.584 12 Si 0.761 3.239 13 H -0.190 1.190 14 H -0.211 1.211 15 H -0.159 1.159 16 C 0.332 3.668 17 O -0.467 6.467 18 C -0.218 4.218 19 H 0.131 0.869 20 C -0.138 4.138 21 C -0.139 4.139 22 C -0.124 4.124 23 C -0.158 4.158 24 C -0.136 4.136 25 H 0.061 0.939 26 H 0.094 0.906 27 H 0.064 0.936 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.049 0.951 33 H 0.065 0.935 34 H 0.107 0.893 35 H 0.092 0.908 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.076 0.924 39 H 0.119 0.881 40 H 0.145 0.855 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.117 0.883 44 H 0.098 0.902 45 H 0.104 0.896 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.923 -5.746 -8.514 12.387 hybrid contribution -0.313 0.836 0.850 1.233 sum 6.610 -4.910 -7.665 11.249 Atomic orbital electron populations 1.21802 0.94924 1.01346 1.01973 1.21048 0.96152 0.96820 0.96766 1.21858 1.01335 0.95001 1.01904 1.21863 0.95920 0.99062 0.98711 1.21507 0.94106 0.97281 0.87148 1.47955 1.63493 1.06158 1.14918 1.19637 0.95368 0.92291 0.83041 1.21491 0.96422 1.34699 1.04381 0.95266 1.25771 1.00155 0.96079 0.95998 1.70057 1.31710 1.43285 1.13306 0.85849 0.80384 0.79922 0.77734 1.19040 1.21132 1.15919 1.19908 0.76807 0.81950 0.88090 1.90548 1.53509 1.66321 1.36292 1.22141 1.04995 0.96738 0.97880 0.86854 1.22835 0.88207 0.98288 1.04479 1.22547 1.01728 0.88392 1.01279 1.22255 1.00008 0.94193 0.95911 1.22761 1.03099 0.95432 0.94537 1.22518 1.01400 0.93325 0.96311 0.93878 0.90567 0.93552 0.90436 0.90853 0.93846 0.92121 0.95148 0.93467 0.89326 0.90812 0.93461 0.94018 0.92416 0.88107 0.85530 0.92107 0.91989 0.88298 0.90212 0.89573 0.90760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.91 9.19 71.98 0.66 -3.25 16 2 C -0.09 -2.58 2.92 -10.80 -0.03 -2.61 16 3 C -0.14 -3.69 8.95 71.98 0.64 -3.04 16 4 C -0.12 -4.46 5.01 30.59 0.15 -4.30 16 5 C 0.12 4.51 5.21 86.38 0.45 4.96 16 6 N -0.60 -25.13 2.46 -826.17 -2.03 -27.16 16 7 C 0.22 9.65 3.92 85.63 0.34 9.99 16 8 C -0.53 -28.69 9.17 25.60 0.23 -28.46 16 9 H 0.03 1.83 7.66 -2.91 -0.02 1.81 16 10 C 0.02 1.01 5.47 84.66 0.46 1.47 16 11 N -0.94 -56.58 13.96 21.45 0.30 -56.28 16 12 Si 0.94 40.22 27.47 68.60 1.88 42.11 16 13 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 14 H -0.29 -12.28 7.11 99.48 0.71 -11.57 16 15 H -0.24 -9.03 6.54 99.48 0.65 -8.38 16 16 C 0.54 23.13 7.46 87.66 0.65 23.79 16 17 O -0.58 -26.47 14.72 -3.04 -0.04 -26.52 16 18 C -0.20 -7.42 4.80 -11.68 -0.06 -7.47 16 19 H 0.11 4.78 7.00 -2.39 -0.02 4.76 16 20 C -0.10 -2.89 10.23 30.44 0.31 -2.58 16 21 C -0.14 -4.34 2.87 -52.39 -0.15 -4.49 16 22 C -0.09 -2.60 6.47 30.98 0.20 -2.40 16 23 C -0.12 -2.70 8.08 31.19 0.25 -2.45 16 24 C -0.10 -2.55 8.10 30.98 0.25 -2.30 16 25 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 30 H 0.04 1.23 8.14 -2.39 -0.02 1.22 16 31 H 0.06 1.48 6.57 -2.39 -0.02 1.46 16 32 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.05 2.11 7.26 -2.39 -0.02 2.10 16 34 H 0.09 2.91 6.32 -2.39 -0.02 2.90 16 35 H 0.07 2.65 7.42 -2.39 -0.02 2.63 16 36 H 0.05 2.00 5.70 -2.38 -0.01 1.99 16 37 H 0.04 1.73 7.32 -2.39 -0.02 1.71 16 38 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 39 H 0.10 2.78 8.14 -2.38 -0.02 2.76 16 40 H 0.13 2.95 8.14 -2.39 -0.02 2.93 16 41 H 0.06 2.11 8.05 -2.39 -0.02 2.09 16 42 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.10 1.81 8.14 -2.39 -0.02 1.80 16 44 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 46 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -65.91 362.78 5.35 -60.56 By element: Atomic # 1 Polarization: 29.57 SS G_CDS: 0.87 Total: 30.44 kcal Atomic # 6 Polarization: -27.52 SS G_CDS: 4.37 Total: -23.15 kcal Atomic # 7 Polarization: -81.71 SS G_CDS: -1.73 Total: -83.44 kcal Atomic # 8 Polarization: -26.47 SS G_CDS: -0.04 Total: -26.52 kcal Atomic # 14 Polarization: 40.22 SS G_CDS: 1.88 Total: 42.11 kcal Total: -65.91 5.35 -60.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610738681.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.743 kcal (2) G-P(sol) polarization free energy of solvation -65.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds