Wall clock time and date at job start Tue Mar 31 2020 01:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52992 * 109.47066 * 2 1 4 4 C 1.52998 * 109.46882 * 240.00265 * 2 1 3 5 5 C 1.52994 * 109.46943 * 120.00591 * 2 1 3 6 6 N 1.46497 * 109.47505 * 66.10366 * 5 2 1 7 7 C 1.46498 * 119.99997 * 271.01268 * 6 5 2 8 8 C 1.50701 * 109.47408 * 272.51223 * 7 6 5 9 9 H 1.08001 * 120.00018 * 355.04279 * 8 7 6 10 10 C 1.37880 * 120.00279 * 175.31456 * 8 7 6 11 11 N 1.31509 * 119.99847 * 359.72127 * 10 8 7 12 12 Si 1.86805 * 119.99965 * 179.72760 * 10 8 7 13 13 H 1.48495 * 109.47227 * 90.00060 * 12 10 8 14 14 H 1.48501 * 109.46882 * 209.99897 * 12 10 8 15 15 H 1.48494 * 109.47067 * 329.99420 * 12 10 8 16 16 C 1.34770 * 120.00248 * 91.01438 * 6 5 2 17 17 O 1.21281 * 120.00278 * 184.84928 * 16 6 5 18 18 C 1.50700 * 119.99824 * 4.85257 * 16 6 5 19 19 H 1.09002 * 115.55897 * 333.78332 * 18 16 6 20 20 C 1.53128 * 117.51597 * 119.52163 * 18 16 6 21 21 C 1.52467 * 117.51316 * 188.04827 * 18 16 6 22 22 C 1.53257 * 128.58327 * 134.94744 * 21 18 16 23 23 C 1.53894 * 86.88253 * 194.88821 * 22 21 18 24 24 C 1.53252 * 128.58162 * 10.15215 * 21 18 16 25 25 H 1.09001 * 109.46498 * 300.00053 * 1 2 3 26 26 H 1.09000 * 109.46768 * 59.99602 * 1 2 3 27 27 H 1.08994 * 109.47074 * 180.02562 * 1 2 3 28 28 H 1.09009 * 109.47049 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47652 * 299.99857 * 3 2 1 30 30 H 1.09001 * 109.47506 * 60.00563 * 3 2 1 31 31 H 1.08999 * 109.47223 * 303.29592 * 4 2 1 32 32 H 1.09004 * 109.47543 * 63.29183 * 4 2 1 33 33 H 1.09001 * 109.47355 * 183.29787 * 4 2 1 34 34 H 1.09007 * 109.47177 * 306.10039 * 5 2 1 35 35 H 1.09003 * 109.46927 * 186.10871 * 5 2 1 36 36 H 1.08997 * 109.47441 * 152.51095 * 7 6 5 37 37 H 1.09004 * 109.47472 * 32.50999 * 7 6 5 38 38 H 0.97000 * 120.00432 * 179.97438 * 11 10 8 39 39 H 1.08995 * 117.50937 * 214.89468 * 20 18 16 40 40 H 1.09000 * 117.51001 * 359.97438 * 20 18 16 41 41 H 1.09001 * 113.64856 * 309.38510 * 22 21 18 42 42 H 1.09003 * 113.64335 * 80.39328 * 22 21 18 43 43 H 1.08996 * 113.58770 * 270.39795 * 23 22 21 44 44 H 1.09005 * 113.65710 * 139.57935 * 23 22 21 45 45 H 1.09004 * 113.64631 * 279.60198 * 24 21 18 46 46 H 1.08996 * 113.65104 * 50.61216 * 24 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7214 1.2491 6 7 1.6753 -2.1384 1.1779 7 6 0.3896 -2.5917 1.7142 8 6 0.5401 -2.9081 3.1799 9 1 1.5135 -2.8611 3.6453 10 6 -0.5641 -3.2630 3.9255 11 7 -1.7495 -3.3201 3.3589 12 14 -0.3763 -3.6625 5.7407 13 1 -0.5439 -2.4225 6.5404 14 1 -1.4094 -4.6519 6.1392 15 1 0.9737 -4.2307 5.9853 16 6 2.5226 -3.0251 0.6190 17 8 2.1853 -4.1817 0.4802 18 6 3.8892 -2.5793 0.1666 19 1 3.9765 -1.5254 -0.0976 20 6 5.1030 -3.2482 0.8177 21 6 4.7289 -3.5757 -0.6249 22 6 5.5435 -3.3380 -1.9011 23 6 5.6000 -4.8687 -2.0498 24 6 4.3045 -4.9224 -1.2208 25 1 -0.3632 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.1301 1.4424 -0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6768 1.9563 0.8900 31 1 1.6292 -1.7304 -1.2794 32 1 1.7257 -0.1744 -2.1383 33 1 3.1284 -0.7727 -1.2203 34 1 1.5902 -0.2745 2.1358 35 1 3.1245 -0.6276 1.3055 36 1 0.0684 -3.4862 1.1806 37 1 -0.3548 -1.8057 1.5868 38 1 -2.5262 -3.5701 3.8833 39 1 5.9888 -2.6345 0.9810 40 1 4.9128 -4.0104 1.5734 41 1 4.9814 -2.8423 -2.6926 42 1 6.5160 -2.8801 -1.7200 43 1 6.4558 -5.3240 -1.5515 44 1 5.4755 -5.2133 -3.0764 45 1 4.2838 -5.7348 -0.4943 46 1 3.3976 -4.8678 -1.8229 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610738796.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:46:21 Heat of formation + Delta-G solvation = 3.314092 kcal Electronic energy + Delta-G solvation = -23487.350291 eV Core-core repulsion = 20378.397275 eV Total energy + Delta-G solvation = -3108.953016 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.13518 -38.44282 -36.75843 -33.87820 -33.31292 -32.26695 -28.10832 -27.12808 -26.81360 -25.52959 -25.47387 -23.98083 -22.92231 -21.70791 -19.21145 -18.45976 -17.45209 -16.61344 -16.49082 -15.53929 -15.07964 -14.84675 -14.71078 -14.26183 -13.97876 -13.74048 -13.29493 -12.88496 -12.44778 -12.38820 -12.16941 -12.04705 -11.98421 -11.63940 -11.46547 -11.38666 -11.22556 -11.16945 -11.13566 -10.90903 -10.79302 -10.54458 -10.37496 -10.15392 -10.13924 -10.09930 -9.76642 -9.54116 -9.42074 -8.73341 -8.39764 -7.51399 -6.01796 -4.06025 3.23584 3.30603 3.37436 3.41934 3.91281 4.15133 4.45097 4.60999 4.77939 4.96211 5.01910 5.04474 5.10043 5.15456 5.25000 5.31723 5.45370 5.50986 5.69180 5.70989 5.76575 5.81109 5.84779 5.86466 5.90974 5.94692 6.01743 6.03670 6.14563 6.21804 6.24290 6.32047 6.36703 6.42593 6.46876 6.48832 6.55005 6.64677 6.77072 7.22020 7.50426 7.63830 7.95910 8.28946 8.54800 8.94402 9.21163 9.59077 11.05763 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.014466 B = 0.006314 C = 0.004927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.131705 B = 4433.563392 C = 5681.367898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.088 4.088 3 C -0.137 4.137 4 C -0.144 4.144 5 C 0.122 3.878 6 N -0.590 5.590 7 C 0.240 3.760 8 C -0.525 4.525 9 H 0.056 0.944 10 C 0.061 3.939 11 N -0.895 5.895 12 Si 0.895 3.105 13 H -0.281 1.281 14 H -0.286 1.286 15 H -0.275 1.275 16 C 0.539 3.461 17 O -0.543 6.543 18 C -0.180 4.180 19 H 0.123 0.877 20 C -0.126 4.126 21 C -0.129 4.129 22 C -0.098 4.098 23 C -0.142 4.142 24 C -0.081 4.081 25 H 0.055 0.945 26 H 0.044 0.956 27 H 0.070 0.930 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.048 0.952 33 H 0.056 0.944 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.040 0.960 37 H 0.044 0.956 38 H 0.262 0.738 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.083 0.917 42 H 0.065 0.935 43 H 0.077 0.923 44 H 0.065 0.935 45 H 0.069 0.931 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.486 6.681 -9.709 17.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.089 4.089 3 C -0.194 4.194 4 C -0.201 4.201 5 C -0.002 4.002 6 N -0.320 5.320 7 C 0.121 3.879 8 C -0.564 4.564 9 H 0.074 0.926 10 C -0.141 4.141 11 N -0.534 5.534 12 Si 0.723 3.277 13 H -0.207 1.207 14 H -0.211 1.211 15 H -0.200 1.200 16 C 0.326 3.674 17 O -0.421 6.421 18 C -0.201 4.201 19 H 0.141 0.859 20 C -0.164 4.164 21 C -0.130 4.130 22 C -0.135 4.135 23 C -0.179 4.179 24 C -0.118 4.118 25 H 0.074 0.926 26 H 0.063 0.937 27 H 0.089 0.911 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.058 0.942 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.117 0.883 40 H 0.119 0.881 41 H 0.101 0.899 42 H 0.083 0.917 43 H 0.096 0.904 44 H 0.084 0.916 45 H 0.088 0.912 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 12.069 6.013 -9.723 16.624 hybrid contribution -0.087 0.018 1.213 1.216 sum 11.982 6.031 -8.510 15.885 Atomic orbital electron populations 1.21981 0.94020 1.03180 1.00821 1.21003 0.96805 0.94959 0.96120 1.21805 1.00457 0.95505 1.01681 1.22060 1.00535 1.00892 0.96619 1.21506 0.99199 0.82340 0.97203 1.48036 1.20398 1.06132 1.57450 1.19410 0.78666 0.96366 0.93414 1.21480 0.94067 1.46419 0.94414 0.92604 1.24918 0.95120 0.95441 0.98585 1.69927 0.98778 1.48452 1.36260 0.86538 0.77896 0.78136 0.85104 1.20671 1.21138 1.19966 1.19305 0.84741 0.85542 0.77798 1.90638 1.76824 1.18348 1.56293 1.22620 0.91835 0.99226 1.06452 0.85913 1.22757 0.96790 1.02427 0.94386 1.22197 1.00880 0.97567 0.92348 1.22483 0.98834 0.96771 0.95459 1.22811 0.98931 0.96028 1.00169 1.22275 0.96581 0.94949 0.98027 0.92564 0.93694 0.91100 0.92985 0.92833 0.92521 0.92200 0.93271 0.92542 0.90131 0.91624 0.94246 0.93838 0.92791 0.88311 0.88142 0.89889 0.91653 0.90418 0.91610 0.91234 0.89723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 7.52 37.16 0.28 -1.98 16 2 C -0.09 -1.25 0.85 -154.51 -0.13 -1.38 16 3 C -0.14 -1.55 8.47 37.15 0.31 -1.23 16 4 C -0.14 -2.00 7.02 37.16 0.26 -1.74 16 5 C 0.12 2.05 4.46 -4.05 -0.02 2.03 16 6 N -0.59 -12.46 1.97 -175.06 -0.34 -12.80 16 7 C 0.24 6.25 4.42 -5.19 -0.02 6.22 16 8 C -0.52 -14.89 9.39 -34.44 -0.32 -15.21 16 9 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 10 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 11 N -0.89 -26.54 13.29 55.43 0.74 -25.80 16 12 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 15 H -0.27 -6.74 7.11 56.52 0.40 -6.33 16 16 C 0.54 11.29 5.80 -10.99 -0.06 11.23 16 17 O -0.54 -13.55 14.81 5.56 0.08 -13.47 16 18 C -0.18 -2.86 4.17 -91.98 -0.38 -3.24 16 19 H 0.12 1.69 4.13 -51.93 -0.21 1.48 16 20 C -0.13 -1.80 10.24 -26.87 -0.28 -2.08 16 21 C -0.13 -1.84 2.86 -154.73 -0.44 -2.28 16 22 C -0.10 -1.09 8.10 -26.13 -0.21 -1.31 16 23 C -0.14 -1.59 8.08 -25.80 -0.21 -1.80 16 24 C -0.08 -1.20 6.52 -26.13 -0.17 -1.37 16 25 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 1.34 5.74 -51.93 -0.30 1.04 16 28 H 0.05 0.52 8.14 -51.92 -0.42 0.10 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 1.01 6.59 -51.93 -0.34 0.66 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.71 5.45 -51.93 -0.28 0.43 16 34 H 0.08 1.43 8.08 -51.92 -0.42 1.01 16 35 H 0.07 0.96 6.21 -51.93 -0.32 0.64 16 36 H 0.04 1.17 7.29 -51.93 -0.38 0.79 16 37 H 0.04 1.14 5.73 -51.93 -0.30 0.84 16 38 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 39 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 40 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 41 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 46 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 353.62 15.07 5.33 5.33 Total: -1.00 -31.53 353.62 -8.73 -40.26 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -8.02 Total: 2.05 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: -1.49 Total: -12.50 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: 0.39 Total: -38.61 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: 0.08 Total: -13.47 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.53 -8.73 -40.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610738796.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.578 kcal (2) G-P(sol) polarization free energy of solvation -31.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds