Wall clock time and date at job start Tue Mar 31 2020 01:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52992 * 109.47066 * 2 1 4 4 C 1.52998 * 109.46882 * 240.00265 * 2 1 3 5 5 C 1.52994 * 109.46943 * 120.00591 * 2 1 3 6 6 N 1.46497 * 109.47505 * 66.10366 * 5 2 1 7 7 C 1.46498 * 119.99997 * 271.01268 * 6 5 2 8 8 C 1.50701 * 109.47408 * 272.51223 * 7 6 5 9 9 H 1.08001 * 120.00018 * 355.04279 * 8 7 6 10 10 C 1.37880 * 120.00279 * 175.31456 * 8 7 6 11 11 N 1.31509 * 119.99847 * 359.72127 * 10 8 7 12 12 Si 1.86805 * 119.99965 * 179.72760 * 10 8 7 13 13 H 1.48495 * 109.47227 * 90.00060 * 12 10 8 14 14 H 1.48501 * 109.46882 * 209.99897 * 12 10 8 15 15 H 1.48494 * 109.47067 * 329.99420 * 12 10 8 16 16 C 1.34770 * 120.00248 * 91.01438 * 6 5 2 17 17 O 1.21281 * 120.00278 * 184.84928 * 16 6 5 18 18 C 1.50700 * 119.99824 * 4.85257 * 16 6 5 19 19 H 1.09002 * 115.55897 * 333.78332 * 18 16 6 20 20 C 1.53128 * 117.51597 * 119.52163 * 18 16 6 21 21 C 1.52467 * 117.51316 * 188.04827 * 18 16 6 22 22 C 1.53257 * 128.58327 * 134.94744 * 21 18 16 23 23 C 1.53894 * 86.88253 * 194.88821 * 22 21 18 24 24 C 1.53252 * 128.58162 * 10.15215 * 21 18 16 25 25 H 1.09001 * 109.46498 * 300.00053 * 1 2 3 26 26 H 1.09000 * 109.46768 * 59.99602 * 1 2 3 27 27 H 1.08994 * 109.47074 * 180.02562 * 1 2 3 28 28 H 1.09009 * 109.47049 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47652 * 299.99857 * 3 2 1 30 30 H 1.09001 * 109.47506 * 60.00563 * 3 2 1 31 31 H 1.08999 * 109.47223 * 303.29592 * 4 2 1 32 32 H 1.09004 * 109.47543 * 63.29183 * 4 2 1 33 33 H 1.09001 * 109.47355 * 183.29787 * 4 2 1 34 34 H 1.09007 * 109.47177 * 306.10039 * 5 2 1 35 35 H 1.09003 * 109.46927 * 186.10871 * 5 2 1 36 36 H 1.08997 * 109.47441 * 152.51095 * 7 6 5 37 37 H 1.09004 * 109.47472 * 32.50999 * 7 6 5 38 38 H 0.97000 * 120.00432 * 179.97438 * 11 10 8 39 39 H 1.08995 * 117.50937 * 214.89468 * 20 18 16 40 40 H 1.09000 * 117.51001 * 359.97438 * 20 18 16 41 41 H 1.09001 * 113.64856 * 309.38510 * 22 21 18 42 42 H 1.09003 * 113.64335 * 80.39328 * 22 21 18 43 43 H 1.08996 * 113.58770 * 270.39795 * 23 22 21 44 44 H 1.09005 * 113.65710 * 139.57935 * 23 22 21 45 45 H 1.09004 * 113.64631 * 279.60198 * 24 21 18 46 46 H 1.08996 * 113.65104 * 50.61216 * 24 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7214 1.2491 6 7 1.6753 -2.1384 1.1779 7 6 0.3896 -2.5917 1.7142 8 6 0.5401 -2.9081 3.1799 9 1 1.5135 -2.8611 3.6453 10 6 -0.5641 -3.2630 3.9255 11 7 -1.7495 -3.3201 3.3589 12 14 -0.3763 -3.6625 5.7407 13 1 -0.5439 -2.4225 6.5404 14 1 -1.4094 -4.6519 6.1392 15 1 0.9737 -4.2307 5.9853 16 6 2.5226 -3.0251 0.6190 17 8 2.1853 -4.1817 0.4802 18 6 3.8892 -2.5793 0.1666 19 1 3.9765 -1.5254 -0.0976 20 6 5.1030 -3.2482 0.8177 21 6 4.7289 -3.5757 -0.6249 22 6 5.5435 -3.3380 -1.9011 23 6 5.6000 -4.8687 -2.0498 24 6 4.3045 -4.9224 -1.2208 25 1 -0.3632 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.1301 1.4424 -0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6768 1.9563 0.8900 31 1 1.6292 -1.7304 -1.2794 32 1 1.7257 -0.1744 -2.1383 33 1 3.1284 -0.7727 -1.2203 34 1 1.5902 -0.2745 2.1358 35 1 3.1245 -0.6276 1.3055 36 1 0.0684 -3.4862 1.1806 37 1 -0.3548 -1.8057 1.5868 38 1 -2.5262 -3.5701 3.8833 39 1 5.9888 -2.6345 0.9810 40 1 4.9128 -4.0104 1.5734 41 1 4.9814 -2.8423 -2.6926 42 1 6.5160 -2.8801 -1.7200 43 1 6.4558 -5.3240 -1.5515 44 1 5.4755 -5.2133 -3.0764 45 1 4.2838 -5.7348 -0.4943 46 1 3.3976 -4.8678 -1.8229 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610738796.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:46:19 Heat of formation + Delta-G solvation = -13.971534 kcal Electronic energy + Delta-G solvation = -23488.099851 eV Core-core repulsion = 20378.397275 eV Total energy + Delta-G solvation = -3109.702577 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -41.53230 -39.70074 -38.22165 -35.69448 -34.56818 -34.21529 -29.98931 -28.29317 -28.08230 -26.95380 -26.54437 -25.75422 -23.93011 -23.38123 -20.59430 -19.65768 -18.81849 -18.59677 -18.10042 -17.13966 -16.51173 -16.28889 -16.04114 -15.70418 -15.28146 -15.05969 -14.72450 -14.49509 -14.16383 -13.67641 -13.58478 -13.27709 -13.13741 -13.08997 -12.95909 -12.73496 -12.61673 -12.52418 -12.45605 -12.39811 -12.21243 -12.14700 -11.95336 -11.68012 -11.55135 -11.40773 -11.19546 -10.89940 -10.65699 -10.57180 -10.40240 -9.30486 -8.22742 -6.38095 1.33285 1.36267 1.46492 1.72915 2.28772 2.44707 2.89065 3.05638 3.42248 3.74153 3.79252 3.89175 3.92735 3.95423 4.00347 4.07404 4.17212 4.49545 4.53813 4.58551 4.66421 4.76250 4.79494 4.82161 4.88049 4.91310 4.94035 4.95692 5.02409 5.07032 5.11172 5.12690 5.17204 5.20956 5.24679 5.25984 5.37668 5.44241 5.46922 5.54987 5.55631 5.61283 5.90706 6.08847 6.71120 6.87309 7.27845 7.56353 8.83355 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.014466 B = 0.006314 C = 0.004927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.131705 B = 4433.563392 C = 5681.367898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.082 4.082 3 C -0.129 4.129 4 C -0.137 4.137 5 C 0.116 3.884 6 N -0.594 5.594 7 C 0.260 3.740 8 C -0.543 4.543 9 H 0.049 0.951 10 C 0.009 3.991 11 N -0.928 5.928 12 Si 0.966 3.034 13 H -0.262 1.262 14 H -0.280 1.280 15 H -0.274 1.274 16 C 0.529 3.471 17 O -0.599 6.599 18 C -0.187 4.187 19 H 0.153 0.847 20 C -0.116 4.116 21 C -0.132 4.132 22 C -0.080 4.080 23 C -0.126 4.126 24 C -0.101 4.101 25 H 0.048 0.952 26 H 0.066 0.934 27 H 0.027 0.973 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.019 0.981 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.066 0.934 35 H 0.097 0.903 36 H -0.014 1.014 37 H 0.036 0.964 38 H 0.267 0.733 39 H 0.143 0.857 40 H 0.072 0.928 41 H 0.092 0.908 42 H 0.095 0.905 43 H 0.091 0.909 44 H 0.080 0.920 45 H 0.040 0.960 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.759 9.166 -10.106 20.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.083 4.083 3 C -0.187 4.187 4 C -0.194 4.194 5 C -0.006 4.006 6 N -0.322 5.322 7 C 0.139 3.861 8 C -0.582 4.582 9 H 0.068 0.932 10 C -0.190 4.190 11 N -0.567 5.567 12 Si 0.790 3.210 13 H -0.187 1.187 14 H -0.206 1.206 15 H -0.199 1.199 16 C 0.319 3.681 17 O -0.481 6.481 18 C -0.208 4.208 19 H 0.170 0.830 20 C -0.154 4.154 21 C -0.133 4.133 22 C -0.117 4.117 23 C -0.164 4.164 24 C -0.139 4.139 25 H 0.067 0.933 26 H 0.085 0.915 27 H 0.046 0.954 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.038 0.962 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.115 0.885 36 H 0.004 0.996 37 H 0.054 0.946 38 H 0.076 0.924 39 H 0.160 0.840 40 H 0.091 0.909 41 H 0.110 0.890 42 H 0.114 0.886 43 H 0.109 0.891 44 H 0.099 0.901 45 H 0.059 0.941 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 15.363 8.547 -10.128 20.289 hybrid contribution -1.199 -0.826 1.310 1.958 sum 14.165 7.721 -8.819 18.385 Atomic orbital electron populations 1.21940 0.95853 1.00495 1.01526 1.20982 0.95275 0.97122 0.94952 1.21749 1.01882 0.92464 1.02568 1.21997 1.01578 0.98714 0.97137 1.21816 1.01039 0.79610 0.98170 1.48001 1.18778 1.08384 1.57079 1.18815 0.81236 0.93966 0.92073 1.21738 0.93948 1.46988 0.95537 0.93249 1.25838 0.94662 0.94938 1.03561 1.70053 0.99586 1.48912 1.38189 0.85441 0.77730 0.78572 0.79228 1.18664 1.20586 1.19918 1.20277 0.86478 0.84689 0.76673 1.90604 1.78239 1.20824 1.58455 1.22522 0.88724 1.01013 1.08503 0.82971 1.22876 0.96995 1.01787 0.93695 1.22505 1.00456 0.96463 0.93862 1.22479 0.99530 0.96556 0.93102 1.22777 0.96570 0.96742 1.00271 1.22331 0.98046 0.95081 0.98435 0.93309 0.91474 0.95419 0.90652 0.91272 0.92415 0.96202 0.91241 0.90433 0.91547 0.88482 0.99590 0.94590 0.92439 0.83953 0.90900 0.88990 0.88615 0.89093 0.90103 0.94088 0.92119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.56 7.52 71.98 0.54 -4.02 16 2 C -0.08 -2.23 0.85 -52.18 -0.04 -2.28 16 3 C -0.13 -2.43 8.47 71.98 0.61 -1.82 16 4 C -0.14 -3.57 7.02 71.98 0.51 -3.07 16 5 C 0.12 3.85 4.46 86.38 0.39 4.24 16 6 N -0.59 -26.32 1.97 -826.17 -1.62 -27.95 16 7 C 0.26 14.60 4.42 85.63 0.38 14.98 16 8 C -0.54 -32.36 9.39 25.60 0.24 -32.12 16 9 H 0.05 2.93 7.81 -2.91 -0.02 2.90 16 10 C 0.01 0.53 5.46 84.66 0.46 0.99 16 11 N -0.93 -57.30 13.29 21.45 0.28 -57.01 16 12 Si 0.97 45.92 29.54 68.60 2.03 47.94 16 13 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 14 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 15 H -0.27 -12.92 7.11 99.48 0.71 -12.22 16 16 C 0.53 23.23 5.80 87.66 0.51 23.73 16 17 O -0.60 -32.47 14.81 -3.03 -0.04 -32.51 16 18 C -0.19 -5.70 4.17 -11.67 -0.05 -5.75 16 19 H 0.15 3.64 4.13 -2.39 -0.01 3.63 16 20 C -0.12 -3.09 10.24 30.50 0.31 -2.78 16 21 C -0.13 -3.56 2.86 -52.32 -0.15 -3.71 16 22 C -0.08 -1.45 8.10 30.98 0.25 -1.20 16 23 C -0.13 -2.52 8.08 31.20 0.25 -2.27 16 24 C -0.10 -3.09 6.52 30.98 0.20 -2.89 16 25 H 0.05 1.60 8.14 -2.39 -0.02 1.59 16 26 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.03 1.11 5.74 -2.39 -0.01 1.10 16 28 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 29 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.02 0.66 6.59 -2.39 -0.02 0.65 16 32 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.08 1.67 5.45 -2.39 -0.01 1.65 16 34 H 0.07 2.38 8.08 -2.38 -0.02 2.36 16 35 H 0.10 2.59 6.21 -2.39 -0.01 2.57 16 36 H -0.01 -0.92 7.29 -2.39 -0.02 -0.94 16 37 H 0.04 2.05 5.73 -2.38 -0.01 2.03 16 38 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 39 H 0.14 2.55 8.14 -2.39 -0.02 2.53 16 40 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 41 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 45 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 46 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -76.05 353.62 5.99 -70.07 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: 0.94 Total: 17.42 kcal Atomic # 6 Polarization: -22.37 SS G_CDS: 4.41 Total: -17.96 kcal Atomic # 7 Polarization: -83.62 SS G_CDS: -1.34 Total: -84.96 kcal Atomic # 8 Polarization: -32.47 SS G_CDS: -0.04 Total: -32.51 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.94 kcal Total: -76.05 5.99 -70.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610738796.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.096 kcal (2) G-P(sol) polarization free energy of solvation -76.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds