Wall clock time and date at job start Tue Mar 31 2020 01:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46841 * 2 1 4 4 C 1.53000 * 109.47031 * 240.00463 * 2 1 3 5 5 C 1.53002 * 109.47309 * 119.99859 * 2 1 3 6 6 N 1.46496 * 109.46603 * 60.00247 * 5 2 1 7 7 C 1.46506 * 120.00327 * 269.99734 * 6 5 2 8 8 C 1.50700 * 109.46897 * 270.00449 * 7 6 5 9 9 H 1.08000 * 120.00189 * 359.97438 * 8 7 6 10 10 C 1.37881 * 119.99694 * 179.97438 * 8 7 6 11 11 N 1.31511 * 119.99929 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99756 * 179.97438 * 10 8 7 13 13 H 1.48507 * 109.46684 * 60.00562 * 12 10 8 14 14 H 1.48506 * 109.46884 * 179.97438 * 12 10 8 15 15 H 1.48490 * 109.47441 * 300.00491 * 12 10 8 16 16 C 1.34778 * 120.00253 * 90.00144 * 6 5 2 17 17 O 1.21277 * 120.00426 * 179.97438 * 16 6 5 18 18 C 1.50706 * 119.99906 * 359.97438 * 16 6 5 19 19 H 1.09007 * 115.55454 * 34.41803 * 18 16 6 20 20 C 1.53124 * 117.51535 * 248.68523 * 18 16 6 21 21 C 1.52456 * 117.51594 * 180.15219 * 18 16 6 22 22 C 1.53264 * 128.58379 * 349.85400 * 21 18 16 23 23 C 1.53892 * 86.87900 * 194.88486 * 22 21 18 24 24 C 1.53246 * 128.58833 * 225.05101 * 21 18 16 25 25 H 1.08996 * 109.46762 * 299.99585 * 1 2 3 26 26 H 1.09001 * 109.47113 * 59.99788 * 1 2 3 27 27 H 1.08998 * 109.46425 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47405 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47187 * 300.00492 * 3 2 1 30 30 H 1.09002 * 109.46723 * 60.00379 * 3 2 1 31 31 H 1.08998 * 109.46911 * 299.99865 * 4 2 1 32 32 H 1.09001 * 109.47377 * 59.99911 * 4 2 1 33 33 H 1.09003 * 109.46646 * 179.97438 * 4 2 1 34 34 H 1.09001 * 109.47127 * 300.00466 * 5 2 1 35 35 H 1.09001 * 109.46997 * 180.02562 * 5 2 1 36 36 H 1.09004 * 109.46609 * 30.00204 * 7 6 5 37 37 H 1.09000 * 109.47311 * 150.00024 * 7 6 5 38 38 H 0.96998 * 119.99859 * 179.97438 * 11 10 8 39 39 H 1.08997 * 117.51014 * 0.02562 * 20 18 16 40 40 H 1.08995 * 117.51293 * 145.09919 * 20 18 16 41 41 H 1.09000 * 113.64427 * 309.38290 * 22 21 18 42 42 H 1.08999 * 113.64273 * 80.38684 * 22 21 18 43 43 H 1.08998 * 113.58597 * 270.38436 * 23 22 21 44 44 H 1.09003 * 113.58294 * 139.57381 * 23 22 21 45 45 H 1.08999 * 113.65052 * 279.61019 * 24 21 18 46 46 H 1.09001 * 113.64954 * 50.52671 * 24 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0401 -0.7212 1.2493 6 7 1.5518 -2.1024 1.2492 7 6 0.2717 -2.4269 1.8835 8 6 0.5026 -2.7750 3.3315 9 1 1.5029 -2.7567 3.7384 10 6 -0.5631 -3.1167 4.1368 11 7 -1.7810 -3.1394 3.6411 12 14 -0.2768 -3.5488 5.9314 13 1 0.3415 -2.3913 6.6266 14 1 -1.5745 -3.8764 6.5748 15 1 0.6301 -4.7213 6.0197 16 6 2.2802 -3.0747 0.6655 17 8 1.8762 -4.2182 0.6659 18 6 3.5968 -2.7409 0.0125 19 1 4.1727 -1.9498 0.4928 20 6 3.6771 -2.8480 -1.5129 21 6 4.3722 -3.8835 -0.6336 22 6 4.1088 -5.3905 -0.5402 23 6 5.5266 -5.5881 -1.1051 24 6 5.8679 -4.2014 -0.5318 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 3.1300 1.4427 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9563 0.8901 31 1 1.6767 -1.7488 -1.2493 32 1 1.6767 -0.2073 -2.1393 33 1 3.1301 -0.7207 -1.2495 34 1 1.6767 -0.2074 2.1392 35 1 3.1301 -0.7208 1.2494 36 1 -0.3944 -1.5665 1.8184 37 1 -0.1816 -3.2768 1.3733 38 1 -2.5307 -3.3802 4.2076 39 1 2.7775 -3.1595 -2.0438 40 1 4.3063 -2.1278 -2.0357 41 1 3.9910 -5.7512 0.4816 42 1 3.3200 -5.7385 -1.2072 43 1 5.5604 -5.6305 -2.1937 44 1 6.0748 -6.4028 -0.6320 45 1 6.4894 -3.5964 -1.1919 46 1 6.2401 -4.2297 0.4923 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610738797.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:46:27 Heat of formation + Delta-G solvation = 5.730455 kcal Electronic energy + Delta-G solvation = -23543.176710 eV Core-core repulsion = 20434.328476 eV Total energy + Delta-G solvation = -3108.848234 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.22396 -38.36750 -36.73814 -33.98650 -33.33099 -32.27328 -27.99441 -27.10969 -26.80574 -25.51815 -25.47161 -24.09533 -22.85166 -21.69563 -19.09360 -18.66113 -17.38716 -16.70857 -16.35780 -15.50278 -15.06926 -14.83438 -14.70160 -14.22238 -14.03826 -13.59782 -13.24723 -13.11887 -12.39167 -12.28803 -12.15694 -12.06717 -11.84189 -11.68660 -11.51578 -11.36924 -11.29694 -11.12510 -11.06864 -10.89215 -10.76452 -10.55276 -10.39193 -10.20327 -10.09576 -10.05479 -9.65059 -9.52935 -9.42240 -8.69987 -8.38265 -7.52548 -6.00273 -4.04365 3.26787 3.33686 3.37872 3.41811 3.92487 4.11013 4.46727 4.61923 4.80990 4.96775 4.98397 5.09330 5.10183 5.13197 5.28033 5.33246 5.46739 5.52841 5.70406 5.72733 5.76910 5.79829 5.85545 5.88638 5.95822 5.98857 6.00420 6.04556 6.14788 6.16172 6.25290 6.31642 6.37241 6.40504 6.47917 6.51486 6.61400 6.66819 6.78509 7.17898 7.50064 7.64402 7.97122 8.29795 8.54104 8.95770 9.22501 9.60576 11.07442 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.013314 B = 0.006688 C = 0.004912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.490021 B = 4185.759733 C = 5699.212308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.087 4.087 3 C -0.136 4.136 4 C -0.146 4.146 5 C 0.123 3.877 6 N -0.590 5.590 7 C 0.244 3.756 8 C -0.525 4.525 9 H 0.055 0.945 10 C 0.061 3.939 11 N -0.895 5.895 12 Si 0.896 3.104 13 H -0.277 1.277 14 H -0.286 1.286 15 H -0.277 1.277 16 C 0.536 3.464 17 O -0.538 6.538 18 C -0.170 4.170 19 H 0.115 0.885 20 C -0.119 4.119 21 C -0.136 4.136 22 C -0.080 4.080 23 C -0.142 4.142 24 C -0.098 4.098 25 H 0.055 0.945 26 H 0.043 0.957 27 H 0.067 0.933 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.045 0.955 33 H 0.059 0.941 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.040 0.960 37 H 0.040 0.960 38 H 0.263 0.737 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.088 0.912 42 H 0.066 0.934 43 H 0.076 0.924 44 H 0.065 0.935 45 H 0.064 0.936 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.255 5.635 -10.750 17.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.088 4.088 3 C -0.194 4.194 4 C -0.203 4.203 5 C -0.002 4.002 6 N -0.320 5.320 7 C 0.125 3.875 8 C -0.564 4.564 9 H 0.073 0.927 10 C -0.140 4.140 11 N -0.535 5.535 12 Si 0.723 3.277 13 H -0.203 1.203 14 H -0.212 1.212 15 H -0.203 1.203 16 C 0.323 3.677 17 O -0.416 6.416 18 C -0.191 4.191 19 H 0.133 0.867 20 C -0.156 4.156 21 C -0.137 4.137 22 C -0.118 4.118 23 C -0.180 4.180 24 C -0.136 4.136 25 H 0.074 0.926 26 H 0.063 0.937 27 H 0.086 0.914 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.097 0.903 35 H 0.082 0.918 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.072 0.928 39 H 0.118 0.882 40 H 0.118 0.882 41 H 0.106 0.894 42 H 0.085 0.915 43 H 0.095 0.905 44 H 0.084 0.916 45 H 0.083 0.917 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 11.804 4.984 -10.670 16.674 hybrid contribution 0.017 0.037 1.196 1.196 sum 11.821 5.020 -9.474 15.959 Atomic orbital electron populations 1.21951 0.94154 1.02945 1.00780 1.21001 0.96633 0.94956 0.96219 1.21799 1.00465 0.95551 1.01604 1.22299 1.00786 1.00812 0.96372 1.21507 0.98023 0.83355 0.97268 1.48087 1.23136 1.06101 1.54660 1.19367 0.78834 0.97191 0.92102 1.21434 0.93575 1.46427 0.94922 0.92680 1.24912 0.95015 0.95411 0.98703 1.69918 0.98651 1.48666 1.36232 0.86601 0.77340 0.78955 0.84769 1.20312 1.21208 1.20258 1.19319 0.84407 0.85224 0.78795 1.90650 1.71222 1.20040 1.59699 1.22366 0.98052 1.02387 0.96295 0.86722 1.22897 1.01767 0.99829 0.91139 1.22411 0.95129 0.92569 1.03542 1.22280 0.95547 0.92058 1.01870 1.22814 0.98111 0.96778 1.00281 1.22466 0.93195 0.96781 1.01119 0.92577 0.93743 0.91370 0.92982 0.92881 0.92622 0.91980 0.93573 0.92195 0.90307 0.91755 0.94249 0.94226 0.92753 0.88234 0.88220 0.89401 0.91489 0.90488 0.91634 0.91720 0.89894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 7.22 37.16 0.27 -1.95 16 2 C -0.09 -1.22 0.84 -154.50 -0.13 -1.35 16 3 C -0.14 -1.54 8.47 37.16 0.31 -1.22 16 4 C -0.15 -1.90 6.00 37.16 0.22 -1.68 16 5 C 0.12 2.04 4.55 -4.04 -0.02 2.02 16 6 N -0.59 -12.41 1.98 -175.05 -0.35 -12.76 16 7 C 0.24 6.34 4.07 -5.19 -0.02 6.32 16 8 C -0.52 -14.99 9.39 -34.44 -0.32 -15.31 16 9 H 0.05 1.58 7.81 -52.49 -0.41 1.17 16 10 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 11 N -0.90 -26.74 13.29 55.43 0.74 -26.01 16 12 Si 0.90 22.14 29.54 -169.99 -5.02 17.11 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 14 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 15 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 16 C 0.54 11.21 6.08 -10.98 -0.07 11.15 16 17 O -0.54 -13.53 14.72 5.56 0.08 -13.44 16 18 C -0.17 -2.65 3.80 -91.98 -0.35 -3.00 16 19 H 0.11 1.61 6.44 -51.93 -0.33 1.27 16 20 C -0.12 -1.54 6.89 -26.88 -0.19 -1.72 16 21 C -0.14 -1.93 2.88 -154.73 -0.45 -2.38 16 22 C -0.08 -1.22 6.47 -26.13 -0.17 -1.39 16 23 C -0.14 -1.64 8.08 -25.81 -0.21 -1.85 16 24 C -0.10 -1.14 8.10 -26.14 -0.21 -1.35 16 25 H 0.06 0.91 8.08 -51.93 -0.42 0.49 16 26 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 1.27 5.99 -51.93 -0.31 0.96 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.96 4.69 -51.93 -0.24 0.72 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.69 5.54 -51.93 -0.29 0.40 16 34 H 0.08 1.38 8.07 -51.93 -0.42 0.97 16 35 H 0.06 0.93 6.00 -51.93 -0.31 0.62 16 36 H 0.04 1.02 6.05 -51.93 -0.31 0.71 16 37 H 0.04 1.18 7.42 -51.93 -0.39 0.79 16 38 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 39 H 0.10 1.38 7.38 -51.93 -0.38 1.00 16 40 H 0.10 1.02 7.65 -51.93 -0.40 0.62 16 41 H 0.09 1.51 8.05 -51.93 -0.42 1.10 16 42 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 43 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 46 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 348.04 15.07 5.24 5.24 Total: -1.00 -31.78 348.04 -8.72 -40.50 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -8.00 Total: 1.38 kcal Atomic # 6 Polarization: -10.62 SS G_CDS: -1.42 Total: -12.04 kcal Atomic # 7 Polarization: -39.15 SS G_CDS: 0.39 Total: -38.76 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: 0.08 Total: -13.44 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.78 -8.72 -40.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610738797.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.235 kcal (2) G-P(sol) polarization free energy of solvation -31.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds