Wall clock time and date at job start Tue Mar 31 2020 01:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46841 * 2 1 4 4 C 1.53000 * 109.47031 * 240.00463 * 2 1 3 5 5 C 1.53002 * 109.47309 * 119.99859 * 2 1 3 6 6 N 1.46496 * 109.46603 * 60.00247 * 5 2 1 7 7 C 1.46506 * 120.00327 * 269.99734 * 6 5 2 8 8 C 1.50700 * 109.46897 * 270.00449 * 7 6 5 9 9 H 1.08000 * 120.00189 * 359.97438 * 8 7 6 10 10 C 1.37881 * 119.99694 * 179.97438 * 8 7 6 11 11 N 1.31511 * 119.99929 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99756 * 179.97438 * 10 8 7 13 13 H 1.48507 * 109.46684 * 60.00562 * 12 10 8 14 14 H 1.48506 * 109.46884 * 179.97438 * 12 10 8 15 15 H 1.48490 * 109.47441 * 300.00491 * 12 10 8 16 16 C 1.34778 * 120.00253 * 90.00144 * 6 5 2 17 17 O 1.21277 * 120.00426 * 179.97438 * 16 6 5 18 18 C 1.50706 * 119.99906 * 359.97438 * 16 6 5 19 19 H 1.09007 * 115.55454 * 34.41803 * 18 16 6 20 20 C 1.53124 * 117.51535 * 248.68523 * 18 16 6 21 21 C 1.52456 * 117.51594 * 180.15219 * 18 16 6 22 22 C 1.53264 * 128.58379 * 349.85400 * 21 18 16 23 23 C 1.53892 * 86.87900 * 194.88486 * 22 21 18 24 24 C 1.53246 * 128.58833 * 225.05101 * 21 18 16 25 25 H 1.08996 * 109.46762 * 299.99585 * 1 2 3 26 26 H 1.09001 * 109.47113 * 59.99788 * 1 2 3 27 27 H 1.08998 * 109.46425 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47405 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47187 * 300.00492 * 3 2 1 30 30 H 1.09002 * 109.46723 * 60.00379 * 3 2 1 31 31 H 1.08998 * 109.46911 * 299.99865 * 4 2 1 32 32 H 1.09001 * 109.47377 * 59.99911 * 4 2 1 33 33 H 1.09003 * 109.46646 * 179.97438 * 4 2 1 34 34 H 1.09001 * 109.47127 * 300.00466 * 5 2 1 35 35 H 1.09001 * 109.46997 * 180.02562 * 5 2 1 36 36 H 1.09004 * 109.46609 * 30.00204 * 7 6 5 37 37 H 1.09000 * 109.47311 * 150.00024 * 7 6 5 38 38 H 0.96998 * 119.99859 * 179.97438 * 11 10 8 39 39 H 1.08997 * 117.51014 * 0.02562 * 20 18 16 40 40 H 1.08995 * 117.51293 * 145.09919 * 20 18 16 41 41 H 1.09000 * 113.64427 * 309.38290 * 22 21 18 42 42 H 1.08999 * 113.64273 * 80.38684 * 22 21 18 43 43 H 1.08998 * 113.58597 * 270.38436 * 23 22 21 44 44 H 1.09003 * 113.58294 * 139.57381 * 23 22 21 45 45 H 1.08999 * 113.65052 * 279.61019 * 24 21 18 46 46 H 1.09001 * 113.64954 * 50.52671 * 24 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0401 -0.7212 1.2493 6 7 1.5518 -2.1024 1.2492 7 6 0.2717 -2.4269 1.8835 8 6 0.5026 -2.7750 3.3315 9 1 1.5029 -2.7567 3.7384 10 6 -0.5631 -3.1167 4.1368 11 7 -1.7810 -3.1394 3.6411 12 14 -0.2768 -3.5488 5.9314 13 1 0.3415 -2.3913 6.6266 14 1 -1.5745 -3.8764 6.5748 15 1 0.6301 -4.7213 6.0197 16 6 2.2802 -3.0747 0.6655 17 8 1.8762 -4.2182 0.6659 18 6 3.5968 -2.7409 0.0125 19 1 4.1727 -1.9498 0.4928 20 6 3.6771 -2.8480 -1.5129 21 6 4.3722 -3.8835 -0.6336 22 6 4.1088 -5.3905 -0.5402 23 6 5.5266 -5.5881 -1.1051 24 6 5.8679 -4.2014 -0.5318 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 3.1300 1.4427 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9563 0.8901 31 1 1.6767 -1.7488 -1.2493 32 1 1.6767 -0.2073 -2.1393 33 1 3.1301 -0.7207 -1.2495 34 1 1.6767 -0.2074 2.1392 35 1 3.1301 -0.7208 1.2494 36 1 -0.3944 -1.5665 1.8184 37 1 -0.1816 -3.2768 1.3733 38 1 -2.5307 -3.3802 4.2076 39 1 2.7775 -3.1595 -2.0438 40 1 4.3063 -2.1278 -2.0357 41 1 3.9910 -5.7512 0.4816 42 1 3.3200 -5.7385 -1.2072 43 1 5.5604 -5.6305 -2.1937 44 1 6.0748 -6.4028 -0.6320 45 1 6.4894 -3.5964 -1.1919 46 1 6.2401 -4.2297 0.4923 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610738797.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:46:25 Heat of formation + Delta-G solvation = -12.066477 kcal Electronic energy + Delta-G solvation = -23543.948443 eV Core-core repulsion = 20434.328476 eV Total energy + Delta-G solvation = -3109.619967 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.59187 -39.61821 -38.19933 -35.73085 -34.58524 -34.26296 -29.92726 -28.13418 -28.07737 -26.94907 -26.53544 -25.86797 -23.84865 -23.37331 -20.42059 -19.89152 -18.78593 -18.57629 -18.00725 -17.13599 -16.48652 -16.21409 -16.04459 -15.65544 -15.34611 -14.87704 -14.71126 -14.47257 -14.31296 -13.55854 -13.51652 -13.22657 -13.18259 -13.07248 -12.91904 -12.74317 -12.61433 -12.58151 -12.53010 -12.22822 -12.16358 -12.10167 -11.98676 -11.64702 -11.51980 -11.40020 -11.14624 -10.75816 -10.66138 -10.55870 -10.33894 -9.30916 -8.22833 -6.37992 1.32313 1.36825 1.44123 1.78206 2.29883 2.44829 2.89396 3.05367 3.44411 3.77608 3.79422 3.93550 3.93910 3.97354 4.02796 4.13389 4.21559 4.54477 4.57763 4.63307 4.67456 4.80761 4.82760 4.86638 4.88281 4.93239 4.96754 5.01489 5.04220 5.09315 5.12296 5.14760 5.18338 5.21429 5.25709 5.28044 5.40310 5.46156 5.51393 5.56518 5.57105 5.63637 5.91673 6.08859 6.70312 6.88600 7.28126 7.58833 8.83159 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.013314 B = 0.006688 C = 0.004912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.490021 B = 4185.759733 C = 5699.212308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.081 4.081 3 C -0.129 4.129 4 C -0.141 4.141 5 C 0.117 3.883 6 N -0.593 5.593 7 C 0.265 3.735 8 C -0.544 4.544 9 H 0.049 0.951 10 C 0.008 3.992 11 N -0.928 5.928 12 Si 0.965 3.035 13 H -0.260 1.260 14 H -0.276 1.276 15 H -0.280 1.280 16 C 0.525 3.475 17 O -0.597 6.597 18 C -0.181 4.181 19 H 0.142 0.858 20 C -0.090 4.090 21 C -0.147 4.147 22 C -0.101 4.101 23 C -0.126 4.126 24 C -0.083 4.083 25 H 0.043 0.957 26 H 0.066 0.934 27 H 0.025 0.975 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.051 0.949 31 H 0.029 0.971 32 H 0.063 0.937 33 H 0.086 0.914 34 H 0.063 0.937 35 H 0.096 0.904 36 H 0.032 0.968 37 H -0.013 1.013 38 H 0.267 0.733 39 H 0.083 0.917 40 H 0.146 0.854 41 H 0.053 0.947 42 H 0.044 0.956 43 H 0.095 0.905 44 H 0.075 0.925 45 H 0.097 0.903 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.673 7.829 -11.679 21.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.083 4.083 3 C -0.186 4.186 4 C -0.197 4.197 5 C -0.005 4.005 6 N -0.322 5.322 7 C 0.144 3.856 8 C -0.583 4.583 9 H 0.067 0.933 10 C -0.191 4.191 11 N -0.568 5.568 12 Si 0.789 3.211 13 H -0.184 1.184 14 H -0.201 1.201 15 H -0.205 1.205 16 C 0.315 3.685 17 O -0.479 6.479 18 C -0.201 4.201 19 H 0.159 0.841 20 C -0.127 4.127 21 C -0.147 4.147 22 C -0.139 4.139 23 C -0.163 4.163 24 C -0.120 4.120 25 H 0.062 0.938 26 H 0.085 0.915 27 H 0.044 0.956 28 H 0.094 0.906 29 H 0.087 0.913 30 H 0.071 0.929 31 H 0.048 0.952 32 H 0.082 0.918 33 H 0.104 0.896 34 H 0.082 0.918 35 H 0.114 0.886 36 H 0.050 0.950 37 H 0.005 0.995 38 H 0.075 0.925 39 H 0.101 0.899 40 H 0.164 0.836 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.114 0.886 44 H 0.093 0.907 45 H 0.116 0.884 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 15.248 7.227 -11.610 20.482 hybrid contribution -1.153 -0.695 1.455 1.983 sum 14.094 6.532 -10.154 18.559 Atomic orbital electron populations 1.21912 0.96194 1.00275 1.01243 1.20978 0.94904 0.97010 0.95371 1.21741 1.01882 0.92744 1.02283 1.22256 1.02317 0.98850 0.96319 1.21818 0.99738 0.80715 0.98252 1.48055 1.21528 1.08439 1.54176 1.18751 0.81253 0.94698 0.90914 1.21730 0.93404 1.46901 0.96243 0.93310 1.25839 0.94663 0.95014 1.03566 1.70046 0.99528 1.49188 1.38017 0.85518 0.77580 0.78927 0.79093 1.18395 1.20138 1.20537 1.20339 0.85960 0.84187 0.77995 1.90616 1.73010 1.22460 1.61820 1.22253 0.95169 1.04462 0.98236 0.84083 1.23012 1.01297 0.99434 0.88974 1.22718 0.97154 0.91291 1.03561 1.22294 0.97801 0.93977 0.99785 1.22780 0.94624 0.97617 1.01303 1.22436 0.91144 0.96532 1.01858 0.93820 0.91505 0.95566 0.90638 0.91314 0.92939 0.95192 0.91770 0.89573 0.91849 0.88627 0.94985 0.99538 0.92453 0.89898 0.83622 0.92858 0.93729 0.88616 0.90659 0.88427 0.89982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.47 7.22 71.98 0.52 -3.95 16 2 C -0.08 -2.16 0.84 -52.18 -0.04 -2.20 16 3 C -0.13 -2.43 8.47 71.98 0.61 -1.82 16 4 C -0.14 -3.30 6.00 71.98 0.43 -2.87 16 5 C 0.12 3.84 4.55 86.38 0.39 4.23 16 6 N -0.59 -26.14 1.98 -826.13 -1.64 -27.78 16 7 C 0.27 14.85 4.07 85.63 0.35 15.20 16 8 C -0.54 -32.66 9.39 25.60 0.24 -32.42 16 9 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 10 C 0.01 0.48 5.46 84.66 0.46 0.94 16 11 N -0.93 -57.84 13.29 21.45 0.28 -57.56 16 12 Si 0.96 46.40 29.54 68.60 2.03 48.42 16 13 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 14 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 15 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 16 C 0.53 22.96 6.08 87.66 0.53 23.49 16 17 O -0.60 -32.50 14.72 -3.02 -0.04 -32.54 16 18 C -0.18 -5.36 3.80 -11.68 -0.04 -5.40 16 19 H 0.14 3.41 6.44 -2.38 -0.02 3.40 16 20 C -0.09 -2.07 6.89 30.50 0.21 -1.86 16 21 C -0.15 -3.92 2.88 -52.33 -0.15 -4.07 16 22 C -0.10 -3.16 6.47 30.98 0.20 -2.96 16 23 C -0.13 -2.62 8.08 31.19 0.25 -2.37 16 24 C -0.08 -1.61 8.10 30.98 0.25 -1.36 16 25 H 0.04 1.46 8.08 -2.39 -0.02 1.45 16 26 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.03 1.04 5.99 -2.39 -0.01 1.02 16 28 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.03 0.90 4.69 -2.39 -0.01 0.89 16 32 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.09 1.55 5.54 -2.39 -0.01 1.54 16 34 H 0.06 2.25 8.07 -2.39 -0.02 2.23 16 35 H 0.10 2.51 6.00 -2.39 -0.01 2.49 16 36 H 0.03 1.81 6.05 -2.39 -0.01 1.80 16 37 H -0.01 -0.89 7.42 -2.39 -0.02 -0.90 16 38 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 39 H 0.08 2.22 7.38 -2.39 -0.02 2.21 16 40 H 0.15 2.06 7.65 -2.39 -0.02 2.04 16 41 H 0.05 1.99 8.05 -2.39 -0.02 1.97 16 42 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 46 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -76.90 348.04 5.78 -71.11 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: 0.94 Total: 15.75 kcal Atomic # 6 Polarization: -21.62 SS G_CDS: 4.21 Total: -17.41 kcal Atomic # 7 Polarization: -83.98 SS G_CDS: -1.35 Total: -85.33 kcal Atomic # 8 Polarization: -32.50 SS G_CDS: -0.04 Total: -32.54 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.42 kcal Total: -76.90 5.78 -71.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610738797.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.048 kcal (2) G-P(sol) polarization free energy of solvation -76.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds