Wall clock time and date at job start Tue Mar 31 2020 02:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52994 * 109.47497 * 2 1 4 4 H 1.08992 * 109.47292 * 307.51558 * 3 2 1 5 5 C 1.50705 * 109.47187 * 187.51185 * 3 2 1 6 6 H 1.08004 * 119.99840 * 240.00259 * 5 3 2 7 7 C 1.37870 * 120.00060 * 59.99984 * 5 3 2 8 8 N 1.31514 * 120.00197 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00267 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.46834 * 60.00162 * 9 7 5 11 11 H 1.48497 * 109.47195 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47079 * 300.00420 * 9 7 5 13 13 N 1.46505 * 109.46766 * 67.51646 * 3 2 1 14 14 C 1.34775 * 119.99448 * 208.40472 * 13 3 2 15 15 O 1.21284 * 120.00686 * 357.31924 * 14 13 3 16 16 C 1.50706 * 119.99881 * 177.31948 * 14 13 3 17 17 H 1.08997 * 115.54896 * 292.75611 * 16 14 13 18 18 C 1.53000 * 117.49798 * 147.07927 * 16 14 13 19 19 H 1.09004 * 117.49419 * 145.02081 * 18 16 14 20 20 C 1.50698 * 117.49990 * 0.02562 * 18 16 14 21 21 C 1.31004 * 120.00181 * 126.42934 * 20 18 16 22 22 C 1.50701 * 119.99760 * 359.97438 * 21 20 18 23 23 C 1.50698 * 120.00181 * 179.97438 * 21 20 18 24 24 C 1.53000 * 117.49851 * 78.42270 * 16 14 13 25 25 C 1.52995 * 117.49926 * 214.98408 * 24 16 14 26 26 C 1.53002 * 117.49886 * 359.97438 * 24 16 14 27 27 H 1.09003 * 109.46900 * 72.10396 * 1 2 3 28 28 H 1.09001 * 109.47902 * 192.10399 * 1 2 3 29 29 H 1.09000 * 109.47087 * 312.10658 * 1 2 3 30 30 H 1.09003 * 109.46984 * 120.00418 * 2 1 3 31 31 H 1.09001 * 109.47124 * 239.99764 * 2 1 3 32 32 H 0.96994 * 120.00691 * 179.97438 * 8 7 5 33 33 H 0.96993 * 120.00222 * 28.40450 * 13 3 2 34 34 H 1.07998 * 119.99939 * 306.42890 * 20 18 16 35 35 H 1.08997 * 109.47321 * 89.99910 * 22 21 20 36 36 H 1.08998 * 109.46841 * 210.00032 * 22 21 20 37 37 H 1.09006 * 109.47303 * 329.99977 * 22 21 20 38 38 H 1.08995 * 109.47213 * 89.99906 * 23 21 20 39 39 H 1.09001 * 109.47274 * 210.00002 * 23 21 20 40 40 H 1.09004 * 109.46985 * 330.00011 * 23 21 20 41 41 H 1.08999 * 109.47881 * 111.39384 * 25 24 16 42 42 H 1.09006 * 109.47021 * 231.39054 * 25 24 16 43 43 H 1.09004 * 109.47301 * 351.38520 * 25 24 16 44 44 H 1.09001 * 109.47022 * 61.03615 * 26 24 16 45 45 H 1.08992 * 109.47166 * 181.03605 * 26 24 16 46 46 H 1.09001 * 109.47103 * 301.04032 * 26 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5712 1.9936 -0.8151 5 6 3.5356 1.4464 -0.1858 6 1 4.1726 1.8797 0.5712 7 6 4.0906 0.8969 -1.3219 8 7 3.3149 0.3696 -2.2438 9 14 5.9443 0.9024 -1.5525 10 1 6.5834 0.1519 -0.4419 11 1 6.2841 0.2576 -2.8463 12 1 6.4389 2.3026 -1.5528 13 7 1.7048 2.0788 1.2763 14 6 1.5130 3.4116 1.3347 15 8 1.6655 4.0905 0.3413 16 6 1.1091 4.0585 2.6346 17 1 0.1131 3.8038 2.9968 18 6 1.6194 5.4748 2.9074 19 1 0.9591 6.1519 3.4494 20 6 2.4870 6.1165 1.8555 21 6 2.1725 7.2944 1.3762 22 6 0.9427 8.0075 1.8763 23 6 3.0404 7.9363 0.3247 24 6 2.2031 4.2887 3.6791 25 6 1.8152 4.1444 5.1520 26 6 3.6234 3.8441 3.3242 27 1 -0.3633 0.3158 -0.9780 28 1 -0.3635 -1.0048 0.2155 29 1 -0.3633 0.6891 0.7624 30 1 1.8933 -0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 3.7053 -0.0167 -3.0433 33 1 1.6209 1.5411 2.0791 34 1 3.3681 5.6053 1.4968 35 1 1.2057 8.6282 2.7328 36 1 0.5390 8.6358 1.0824 37 1 0.1938 7.2741 2.1755 38 1 2.6902 7.6423 -0.6646 39 1 2.9868 9.0207 0.4217 40 1 4.0722 7.6103 0.4567 41 1 2.3005 3.2629 5.5710 42 1 2.1353 5.0304 5.7005 43 1 0.7336 4.0374 5.2341 44 1 3.9657 4.3893 2.4446 45 1 4.2891 4.0515 4.1620 46 1 3.6273 2.7747 3.1131 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613038695.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:08 Heat of formation + Delta-G solvation = -36.626902 kcal Electronic energy + Delta-G solvation = -23051.838749 eV Core-core repulsion = 19941.153762 eV Total energy + Delta-G solvation = -3110.684987 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.25624 -38.90057 -36.92185 -36.42498 -34.24439 -32.65274 -30.59086 -29.10354 -28.81559 -28.51985 -27.55676 -25.34277 -23.86618 -21.71044 -21.06984 -19.99360 -18.89011 -18.53025 -17.43540 -17.08660 -16.44352 -16.06762 -15.65489 -15.29155 -14.87412 -14.76494 -14.52975 -14.31271 -14.09827 -13.93723 -13.62440 -13.46462 -13.29108 -13.21701 -13.19851 -13.08343 -12.90311 -12.73087 -12.66289 -12.33662 -12.20067 -12.16102 -11.80736 -11.61351 -11.48466 -11.45172 -11.36269 -10.71967 -10.48011 -10.30942 -9.59630 -9.22713 -8.11749 -6.26206 1.27139 1.35195 1.38137 1.44705 1.94476 2.37662 2.66411 2.94572 3.13946 3.63301 3.80926 3.96790 4.13163 4.17791 4.21214 4.38785 4.41114 4.48402 4.56180 4.68251 4.72585 4.74058 4.75880 4.77987 4.86477 4.98191 4.99128 5.06177 5.06974 5.09373 5.13013 5.20331 5.24686 5.29411 5.32398 5.34470 5.54119 5.57739 5.71398 5.77896 5.87633 6.14048 6.15027 6.27420 6.79056 7.06087 7.38840 7.75762 8.90023 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.014426 B = 0.005845 C = 0.005174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.438242 B = 4789.040422 C = 5410.128060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.121 4.121 3 C 0.280 3.720 4 H -0.005 1.005 5 C -0.530 4.530 6 H 0.045 0.955 7 C 0.016 3.984 8 N -0.914 5.914 9 Si 0.951 3.049 10 H -0.264 1.264 11 H -0.279 1.279 12 H -0.286 1.286 13 N -0.702 5.702 14 C 0.530 3.470 15 O -0.585 6.585 16 C -0.181 4.181 17 H 0.151 0.849 18 C -0.086 4.086 19 H 0.142 0.858 20 C -0.126 4.126 21 C -0.149 4.149 22 C -0.109 4.109 23 C -0.112 4.112 24 C -0.085 4.085 25 C -0.107 4.107 26 C -0.128 4.128 27 H 0.028 0.972 28 H 0.064 0.936 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.075 0.925 32 H 0.263 0.737 33 H 0.399 0.601 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.049 0.951 39 H 0.083 0.917 40 H 0.049 0.951 41 H 0.070 0.930 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.036 0.964 45 H 0.082 0.918 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.998 8.575 15.532 18.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.160 4.160 3 C 0.176 3.824 4 H 0.013 0.987 5 C -0.569 4.569 6 H 0.063 0.937 7 C -0.183 4.183 8 N -0.554 5.554 9 Si 0.777 3.223 10 H -0.188 1.188 11 H -0.204 1.204 12 H -0.212 1.212 13 N -0.350 5.350 14 C 0.316 3.684 15 O -0.465 6.465 16 C -0.202 4.202 17 H 0.169 0.831 18 C -0.104 4.104 19 H 0.159 0.841 20 C -0.144 4.144 21 C -0.149 4.149 22 C -0.165 4.165 23 C -0.169 4.169 24 C -0.085 4.085 25 C -0.164 4.164 26 C -0.185 4.185 27 H 0.048 0.952 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.072 0.928 33 H 0.233 0.767 34 H 0.094 0.906 35 H 0.102 0.898 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.068 0.932 39 H 0.102 0.898 40 H 0.068 0.932 41 H 0.089 0.911 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.055 0.945 45 H 0.101 0.899 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.889 8.926 14.628 17.820 hybrid contribution 1.176 -0.543 -0.873 1.562 sum -3.713 8.384 13.755 16.531 Atomic orbital electron populations 1.21700 0.96172 1.01255 1.00195 1.21684 0.94543 0.97585 1.02186 1.18308 0.93094 0.89941 0.81007 0.98705 1.21654 0.93065 1.37538 1.04603 0.93694 1.25602 1.02068 0.95127 0.95512 1.69966 1.36123 1.39904 1.09412 0.85726 0.80965 0.77798 0.77831 1.18833 1.20446 1.21178 1.46109 1.69425 1.07292 1.12203 1.20152 0.76375 0.82344 0.89503 1.90655 1.53280 1.63507 1.39095 1.22694 1.01624 1.00859 0.94985 0.83119 1.21552 1.00690 0.89456 0.98710 0.84058 1.21845 0.99384 0.95103 0.98095 1.21707 0.98515 0.96465 0.98206 1.20818 0.94305 0.99943 1.01436 1.20755 0.98040 1.01175 0.96913 1.21755 0.92602 1.00002 0.94185 1.21387 1.02374 1.03077 0.89558 1.21484 0.94808 1.00791 1.01399 0.95237 0.91683 0.92920 0.93077 0.90677 0.92802 0.76673 0.90568 0.89802 0.91723 0.91723 0.93230 0.89816 0.93183 0.91094 0.90532 0.90632 0.94532 0.89936 0.92925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.13 9.93 71.98 0.71 -4.42 16 2 C -0.12 -5.55 5.34 30.59 0.16 -5.38 16 3 C 0.28 14.45 1.96 44.24 0.09 14.53 16 4 H 0.00 -0.31 7.50 -2.39 -0.02 -0.33 16 5 C -0.53 -30.13 8.83 25.60 0.23 -29.90 16 6 H 0.04 2.58 7.81 -2.91 -0.02 2.56 16 7 C 0.02 0.91 5.28 84.65 0.45 1.36 16 8 N -0.91 -53.74 11.29 21.44 0.24 -53.50 16 9 Si 0.95 45.39 29.54 68.60 2.03 47.41 16 10 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 12 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 13 N -0.70 -29.27 4.42 -446.09 -1.97 -31.24 16 14 C 0.53 22.19 6.22 87.66 0.55 22.74 16 15 O -0.59 -30.82 14.57 -3.04 -0.04 -30.87 16 16 C -0.18 -5.32 5.81 -11.54 -0.07 -5.39 16 17 H 0.15 3.48 8.05 -2.39 -0.02 3.46 16 18 C -0.09 -2.33 4.93 -11.52 -0.06 -2.39 16 19 H 0.14 2.96 6.46 -2.38 -0.02 2.94 16 20 C -0.13 -4.27 6.37 25.64 0.16 -4.11 16 21 C -0.15 -4.46 6.05 -16.49 -0.10 -4.56 16 22 C -0.11 -2.41 9.27 71.24 0.66 -1.75 16 23 C -0.11 -3.22 10.02 71.24 0.71 -2.51 16 24 C -0.08 -2.10 2.70 -52.16 -0.14 -2.24 16 25 C -0.11 -1.71 9.81 71.98 0.71 -1.00 16 26 C -0.13 -3.80 8.69 71.98 0.63 -3.17 16 27 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.05 1.82 7.56 -2.39 -0.02 1.80 16 30 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.07 3.96 5.91 -2.39 -0.01 3.94 16 32 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 33 H 0.40 13.79 8.64 -92.71 -0.80 12.99 16 34 H 0.08 3.14 5.80 -2.91 -0.02 3.12 16 35 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.06 1.34 8.12 -2.39 -0.02 1.32 16 37 H 0.06 1.42 6.36 -2.38 -0.02 1.41 16 38 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.08 1.86 8.12 -2.39 -0.02 1.84 16 40 H 0.05 1.48 8.06 -2.39 -0.02 1.46 16 41 H 0.07 1.05 8.09 -2.39 -0.02 1.04 16 42 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 43 H 0.07 0.98 7.90 -2.39 -0.02 0.96 16 44 H 0.04 1.32 5.34 -2.39 -0.01 1.31 16 45 H 0.08 1.98 8.08 -2.39 -0.02 1.96 16 46 H 0.05 1.70 8.12 -2.39 -0.02 1.68 16 Total: -1.00 -71.34 365.43 5.09 -66.25 By element: Atomic # 1 Polarization: 30.00 SS G_CDS: 0.15 Total: 30.15 kcal Atomic # 6 Polarization: -32.89 SS G_CDS: 4.69 Total: -28.20 kcal Atomic # 7 Polarization: -83.02 SS G_CDS: -1.73 Total: -84.74 kcal Atomic # 8 Polarization: -30.82 SS G_CDS: -0.04 Total: -30.87 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.41 kcal Total: -71.34 5.09 -66.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613038695.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.622 kcal (2) G-P(sol) polarization free energy of solvation -71.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds