Wall clock time and date at job start Tue Mar 31 2020 02:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46669 * 2 1 4 4 H 1.08999 * 109.47137 * 304.99192 * 3 2 1 5 5 C 1.50703 * 109.46543 * 184.99637 * 3 2 1 6 6 H 1.07997 * 119.99746 * 239.99372 * 5 3 2 7 7 C 1.37879 * 120.00032 * 60.00539 * 5 3 2 8 8 N 1.31513 * 120.00172 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 119.99961 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47395 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47446 * 119.99379 * 9 7 5 12 12 H 1.48499 * 109.47469 * 239.99748 * 9 7 5 13 13 N 1.46497 * 109.47306 * 64.99816 * 3 2 1 14 14 C 1.34774 * 120.00234 * 274.99758 * 13 3 2 15 15 O 1.21283 * 119.99803 * 0.02562 * 14 13 3 16 16 C 1.50698 * 120.00291 * 179.97438 * 14 13 3 17 17 H 1.08996 * 115.56259 * 329.23089 * 16 14 13 18 18 C 1.52999 * 117.49586 * 183.54145 * 16 14 13 19 19 H 1.08994 * 117.50643 * 359.97438 * 18 16 14 20 20 C 1.50700 * 117.49568 * 145.02426 * 18 16 14 21 21 C 1.31002 * 120.00082 * 188.62002 * 20 18 16 22 22 C 1.50701 * 119.99797 * 359.97438 * 21 20 18 23 23 C 1.50692 * 120.00271 * 179.97438 * 21 20 18 24 24 C 1.53002 * 117.49947 * 114.91792 * 16 14 13 25 25 C 1.53005 * 117.49580 * 0.02562 * 24 16 14 26 26 C 1.52994 * 117.49959 * 214.98301 * 24 16 14 27 27 H 1.08999 * 109.47029 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47561 * 300.00230 * 1 2 3 29 29 H 1.09009 * 109.47095 * 60.00463 * 1 2 3 30 30 H 1.08996 * 109.47561 * 239.99770 * 2 1 3 31 31 H 1.08996 * 109.46923 * 119.99458 * 2 1 3 32 32 H 0.96999 * 120.00141 * 180.02562 * 8 7 5 33 33 H 0.97003 * 120.00206 * 94.99683 * 13 3 2 34 34 H 1.07997 * 120.00664 * 8.61596 * 20 18 16 35 35 H 1.08997 * 109.47177 * 90.00029 * 22 21 20 36 36 H 1.09000 * 109.47422 * 210.00585 * 22 21 20 37 37 H 1.09003 * 109.47022 * 329.99770 * 22 21 20 38 38 H 1.08994 * 109.47379 * 359.97438 * 23 21 20 39 39 H 1.09007 * 109.47383 * 120.00068 * 23 21 20 40 40 H 1.09001 * 109.47332 * 239.99923 * 23 21 20 41 41 H 1.08999 * 109.47032 * 122.83264 * 25 24 16 42 42 H 1.09001 * 109.47246 * 242.83045 * 25 24 16 43 43 H 1.09003 * 109.47188 * 2.83427 * 25 24 16 44 44 H 1.09008 * 109.47118 * 351.37105 * 26 24 16 45 45 H 1.08993 * 109.47524 * 111.37571 * 26 24 16 46 46 H 1.09003 * 109.46734 * 231.37947 * 26 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5418 1.4444 -0.1237 6 1 4.1470 1.8890 0.6524 7 6 4.1433 0.8785 -1.2279 8 7 3.4063 0.3368 -2.1729 9 14 6.0049 0.8813 -1.3816 10 1 6.5986 1.5473 -0.1945 11 1 6.4971 -0.5173 -1.4627 12 1 6.3991 1.6168 -2.6100 13 7 1.6523 2.0976 1.2518 14 6 0.4350 2.6645 1.3669 15 8 -0.3397 2.6319 0.4343 16 6 0.0360 3.3377 2.6547 17 1 0.4769 2.9202 3.5599 18 6 -1.3878 3.8893 2.7519 19 1 -2.0358 3.7656 1.8843 20 6 -2.0733 3.8137 4.0918 21 6 -3.3445 4.1129 4.1951 22 6 -4.1212 4.5332 2.9739 23 6 -4.0301 4.0369 5.5348 24 6 -0.2034 4.8484 2.6175 25 6 -0.0199 5.5598 1.2753 26 6 0.1945 5.6574 3.8536 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 3.8294 -0.0617 -2.9495 33 1 2.2717 2.1233 1.9978 34 1 -1.5166 3.5129 4.9670 35 1 -4.5542 3.6533 2.4981 36 1 -4.9180 5.2166 3.2675 37 1 -3.4533 5.0337 2.2729 38 1 -3.3141 3.7172 6.2918 39 1 -4.4235 5.0188 5.7980 40 1 -4.8490 3.3193 5.4838 41 1 -0.9415 6.0777 1.0097 42 1 0.7927 6.2820 1.3549 43 1 0.2198 4.8266 0.5052 44 1 0.4648 4.9773 4.6614 45 1 1.0467 6.2929 3.6131 46 1 -0.6448 6.2783 4.1670 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613038699.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:20 Heat of formation + Delta-G solvation = -25.794170 kcal Electronic energy + Delta-G solvation = -22580.584055 eV Core-core repulsion = 19470.368811 eV Total energy + Delta-G solvation = -3110.215245 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.96391 -37.74515 -35.59361 -34.76922 -32.30702 -30.88706 -29.63080 -27.98487 -27.79495 -27.11678 -26.46829 -23.50941 -22.32346 -20.04979 -19.35597 -18.94186 -17.95139 -16.74300 -15.72797 -15.37730 -15.00893 -14.67421 -14.36122 -14.19693 -14.03418 -13.56537 -13.13567 -13.12223 -12.67063 -12.46108 -12.42057 -12.32577 -12.00292 -11.92493 -11.78995 -11.62018 -11.44637 -11.25162 -11.19759 -10.95821 -10.81559 -10.72828 -10.30469 -10.28332 -10.11685 -9.66059 -9.58455 -9.02428 -8.91558 -8.48603 -8.41724 -7.74808 -6.10675 -4.19709 2.05687 3.22119 3.24427 3.32286 3.34966 4.04765 4.23022 4.37184 4.75863 4.88218 4.94603 4.96920 5.16073 5.19466 5.20916 5.32399 5.43179 5.57702 5.64483 5.70581 5.71025 5.72568 5.75433 5.84022 5.98521 6.01436 6.07135 6.11319 6.23090 6.37588 6.42667 6.50048 6.58858 6.64126 6.70563 6.91346 7.08361 7.23497 7.40949 7.51924 7.65423 7.77700 7.93693 8.21113 8.74288 8.81827 9.21946 9.48277 10.94648 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.026358 B = 0.004009 C = 0.003743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.056263 B = 6983.470580 C = 7478.358688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.048 0.952 5 C -0.532 4.532 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.705 5.705 14 C 0.533 3.467 15 O -0.549 6.549 16 C -0.175 4.175 17 H 0.114 0.886 18 C -0.089 4.089 19 H 0.122 0.878 20 C -0.125 4.125 21 C -0.135 4.135 22 C -0.120 4.120 23 C -0.113 4.113 24 C -0.088 4.088 25 C -0.125 4.125 26 C -0.111 4.111 27 H 0.021 0.979 28 H 0.039 0.961 29 H 0.049 0.951 30 H 0.098 0.902 31 H 0.030 0.970 32 H 0.263 0.737 33 H 0.388 0.612 34 H 0.108 0.892 35 H 0.066 0.934 36 H 0.057 0.943 37 H 0.069 0.931 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.075 0.925 44 H 0.056 0.944 45 H 0.060 0.940 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.734 8.339 13.255 18.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.066 0.934 5 C -0.571 4.571 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.352 5.352 14 C 0.318 3.682 15 O -0.428 6.428 16 C -0.197 4.197 17 H 0.132 0.868 18 C -0.107 4.107 19 H 0.140 0.860 20 C -0.142 4.142 21 C -0.135 4.135 22 C -0.177 4.177 23 C -0.170 4.170 24 C -0.089 4.089 25 C -0.182 4.182 26 C -0.168 4.168 27 H 0.040 0.960 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.116 0.884 31 H 0.049 0.951 32 H 0.073 0.927 33 H 0.220 0.780 34 H 0.126 0.874 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.094 0.906 44 H 0.075 0.925 45 H 0.079 0.921 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.238 8.199 12.371 18.030 hybrid contribution 1.404 -0.261 0.338 1.467 sum -8.834 7.938 12.709 17.395 Atomic orbital electron populations 1.21836 0.98341 0.97953 1.01278 1.21932 0.92630 0.99882 1.02183 1.18768 0.94124 0.89129 0.81081 0.93394 1.21283 0.90802 1.38780 1.06204 0.92081 1.24887 0.98546 0.94864 0.95421 1.69906 1.34984 1.37729 1.09365 0.86418 0.84986 0.77749 0.78095 1.19755 1.20902 1.20910 1.46427 1.14508 1.55782 1.18451 1.19323 0.82626 0.78655 0.87590 1.90648 1.51614 1.60167 1.40408 1.22731 1.01036 0.97035 0.98860 0.86850 1.21406 0.89496 1.02484 0.97362 0.86024 1.22015 0.94701 1.01502 0.96031 1.21501 0.94980 1.00894 0.96137 1.20848 0.99712 1.01220 0.95886 1.20789 1.00438 1.01726 0.94052 1.21547 1.00774 0.89200 0.97385 1.21485 1.01345 1.00591 0.94748 1.21351 1.01054 0.99257 0.95142 0.95980 0.94164 0.93213 0.88355 0.95129 0.92665 0.78032 0.87441 0.91542 0.92396 0.91236 0.92240 0.91893 0.91816 0.92326 0.92295 0.90630 0.92468 0.92112 0.92077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 8.51 37.16 0.32 -2.80 16 2 C -0.13 -3.14 5.45 -26.73 -0.15 -3.29 16 3 C 0.27 6.83 2.24 -69.08 -0.15 6.68 16 4 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 5 C -0.53 -14.10 8.73 -34.44 -0.30 -14.40 16 6 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.80 11.29 55.43 0.63 -24.17 16 9 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 10 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 N -0.71 -14.76 5.02 -54.93 -0.28 -15.03 16 14 C 0.53 10.56 4.85 -10.99 -0.05 10.51 16 15 O -0.55 -12.58 12.34 5.55 0.07 -12.51 16 16 C -0.18 -2.68 5.54 -91.77 -0.51 -3.19 16 17 H 0.11 1.53 8.05 -51.93 -0.42 1.11 16 18 C -0.09 -1.25 4.26 -91.77 -0.39 -1.64 16 19 H 0.12 1.94 6.29 -51.93 -0.33 1.61 16 20 C -0.12 -1.46 8.29 -36.03 -0.30 -1.76 16 21 C -0.14 -1.45 6.05 -101.07 -0.61 -2.06 16 22 C -0.12 -1.24 9.27 36.01 0.33 -0.91 16 23 C -0.11 -0.95 10.11 36.00 0.36 -0.59 16 24 C -0.09 -1.19 2.70 -154.51 -0.42 -1.61 16 25 C -0.12 -1.81 9.73 37.16 0.36 -1.45 16 26 C -0.11 -1.19 8.86 37.15 0.33 -0.86 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.04 0.90 5.64 -51.93 -0.29 0.60 16 29 H 0.05 1.20 7.85 -51.92 -0.41 0.79 16 30 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16 31 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 33 H 0.39 7.20 8.54 -40.82 -0.35 6.85 16 34 H 0.11 1.16 7.83 -52.49 -0.41 0.75 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.50 8.12 -51.93 -0.42 0.08 16 37 H 0.07 0.77 6.49 -51.93 -0.34 0.44 16 38 H 0.06 0.47 7.78 -51.93 -0.40 0.06 16 39 H 0.06 0.47 8.14 -51.92 -0.42 0.04 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.06 0.77 7.84 -51.93 -0.41 0.36 16 43 H 0.07 1.36 5.60 -51.93 -0.29 1.07 16 44 H 0.06 0.57 7.90 -51.92 -0.41 0.16 16 45 H 0.06 0.62 7.88 -51.93 -0.41 0.21 16 46 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 361.79 15.07 5.45 5.45 Total: -1.00 -29.16 361.79 -8.51 -37.67 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -8.09 Total: 8.63 kcal Atomic # 6 Polarization: -14.42 SS G_CDS: -1.27 Total: -15.69 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: 0.35 Total: -39.20 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: 0.07 Total: -12.51 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.16 -8.51 -37.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613038699.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.878 kcal (2) G-P(sol) polarization free energy of solvation -29.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds