Wall clock time and date at job start Tue Mar 31 2020 02:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46669 * 2 1 4 4 H 1.08999 * 109.47137 * 304.99192 * 3 2 1 5 5 C 1.50703 * 109.46543 * 184.99637 * 3 2 1 6 6 H 1.07997 * 119.99746 * 239.99372 * 5 3 2 7 7 C 1.37879 * 120.00032 * 60.00539 * 5 3 2 8 8 N 1.31513 * 120.00172 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 119.99961 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47395 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47446 * 119.99379 * 9 7 5 12 12 H 1.48499 * 109.47469 * 239.99748 * 9 7 5 13 13 N 1.46497 * 109.47306 * 64.99816 * 3 2 1 14 14 C 1.34774 * 120.00234 * 274.99758 * 13 3 2 15 15 O 1.21283 * 119.99803 * 0.02562 * 14 13 3 16 16 C 1.50698 * 120.00291 * 179.97438 * 14 13 3 17 17 H 1.08996 * 115.56259 * 329.23089 * 16 14 13 18 18 C 1.52999 * 117.49586 * 183.54145 * 16 14 13 19 19 H 1.08994 * 117.50643 * 359.97438 * 18 16 14 20 20 C 1.50700 * 117.49568 * 145.02426 * 18 16 14 21 21 C 1.31002 * 120.00082 * 188.62002 * 20 18 16 22 22 C 1.50701 * 119.99797 * 359.97438 * 21 20 18 23 23 C 1.50692 * 120.00271 * 179.97438 * 21 20 18 24 24 C 1.53002 * 117.49947 * 114.91792 * 16 14 13 25 25 C 1.53005 * 117.49580 * 0.02562 * 24 16 14 26 26 C 1.52994 * 117.49959 * 214.98301 * 24 16 14 27 27 H 1.08999 * 109.47029 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47561 * 300.00230 * 1 2 3 29 29 H 1.09009 * 109.47095 * 60.00463 * 1 2 3 30 30 H 1.08996 * 109.47561 * 239.99770 * 2 1 3 31 31 H 1.08996 * 109.46923 * 119.99458 * 2 1 3 32 32 H 0.96999 * 120.00141 * 180.02562 * 8 7 5 33 33 H 0.97003 * 120.00206 * 94.99683 * 13 3 2 34 34 H 1.07997 * 120.00664 * 8.61596 * 20 18 16 35 35 H 1.08997 * 109.47177 * 90.00029 * 22 21 20 36 36 H 1.09000 * 109.47422 * 210.00585 * 22 21 20 37 37 H 1.09003 * 109.47022 * 329.99770 * 22 21 20 38 38 H 1.08994 * 109.47379 * 359.97438 * 23 21 20 39 39 H 1.09007 * 109.47383 * 120.00068 * 23 21 20 40 40 H 1.09001 * 109.47332 * 239.99923 * 23 21 20 41 41 H 1.08999 * 109.47032 * 122.83264 * 25 24 16 42 42 H 1.09001 * 109.47246 * 242.83045 * 25 24 16 43 43 H 1.09003 * 109.47188 * 2.83427 * 25 24 16 44 44 H 1.09008 * 109.47118 * 351.37105 * 26 24 16 45 45 H 1.08993 * 109.47524 * 111.37571 * 26 24 16 46 46 H 1.09003 * 109.46734 * 231.37947 * 26 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5418 1.4444 -0.1237 6 1 4.1470 1.8890 0.6524 7 6 4.1433 0.8785 -1.2279 8 7 3.4063 0.3368 -2.1729 9 14 6.0049 0.8813 -1.3816 10 1 6.5986 1.5473 -0.1945 11 1 6.4971 -0.5173 -1.4627 12 1 6.3991 1.6168 -2.6100 13 7 1.6523 2.0976 1.2518 14 6 0.4350 2.6645 1.3669 15 8 -0.3397 2.6319 0.4343 16 6 0.0360 3.3377 2.6547 17 1 0.4769 2.9202 3.5599 18 6 -1.3878 3.8893 2.7519 19 1 -2.0358 3.7656 1.8843 20 6 -2.0733 3.8137 4.0918 21 6 -3.3445 4.1129 4.1951 22 6 -4.1212 4.5332 2.9739 23 6 -4.0301 4.0369 5.5348 24 6 -0.2034 4.8484 2.6175 25 6 -0.0199 5.5598 1.2753 26 6 0.1945 5.6574 3.8536 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 3.8294 -0.0617 -2.9495 33 1 2.2717 2.1233 1.9978 34 1 -1.5166 3.5129 4.9670 35 1 -4.5542 3.6533 2.4981 36 1 -4.9180 5.2166 3.2675 37 1 -3.4533 5.0337 2.2729 38 1 -3.3141 3.7172 6.2918 39 1 -4.4235 5.0188 5.7980 40 1 -4.8490 3.3193 5.4838 41 1 -0.9415 6.0777 1.0097 42 1 0.7927 6.2820 1.3549 43 1 0.2198 4.8266 0.5052 44 1 0.4648 4.9773 4.6614 45 1 1.0467 6.2929 3.6131 46 1 -0.6448 6.2783 4.1670 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613038699.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:20 Heat of formation + Delta-G solvation = -41.407285 kcal Electronic energy + Delta-G solvation = -22581.261091 eV Core-core repulsion = 19470.368811 eV Total energy + Delta-G solvation = -3110.892280 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.35002 -39.14618 -36.90130 -36.23969 -34.26266 -32.78646 -30.68473 -29.24075 -28.74010 -28.48860 -27.62462 -25.28701 -23.89020 -21.65998 -21.02262 -20.21555 -19.11643 -18.33560 -17.28927 -17.16216 -16.45130 -16.24354 -15.57431 -15.48498 -14.96501 -14.63147 -14.60660 -14.50586 -14.36819 -13.65462 -13.43408 -13.36588 -13.32596 -13.17692 -13.14934 -12.99952 -12.87613 -12.73180 -12.70020 -12.40277 -12.25939 -12.14231 -12.07635 -11.69583 -11.59331 -11.29657 -11.04415 -10.84178 -10.60014 -10.45621 -9.57810 -9.35460 -8.16532 -6.33822 1.16886 1.43050 1.44170 1.56085 1.77449 2.35628 2.64475 3.01260 3.13050 3.68790 3.77371 3.84580 4.12736 4.14308 4.22330 4.28927 4.47026 4.48096 4.55603 4.66149 4.73267 4.75068 4.75747 4.80700 4.88241 4.97174 4.98219 5.04789 5.06240 5.08058 5.15836 5.17175 5.24608 5.25979 5.31021 5.43035 5.48893 5.56054 5.65529 5.79379 5.80295 5.94449 6.07829 6.17044 6.74923 7.04970 7.33808 7.64223 8.89019 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.026358 B = 0.004009 C = 0.003743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.056263 B = 6983.470580 C = 7478.358688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.121 4.121 3 C 0.280 3.720 4 H -0.004 1.004 5 C -0.547 4.547 6 H 0.070 0.930 7 C 0.015 3.985 8 N -0.915 5.915 9 Si 0.970 3.030 10 H -0.261 1.261 11 H -0.278 1.278 12 H -0.284 1.284 13 N -0.704 5.704 14 C 0.530 3.470 15 O -0.586 6.586 16 C -0.186 4.186 17 H 0.139 0.861 18 C -0.081 4.081 19 H 0.094 0.906 20 C -0.139 4.139 21 C -0.128 4.128 22 C -0.124 4.124 23 C -0.112 4.112 24 C -0.077 4.077 25 C -0.125 4.125 26 C -0.105 4.105 27 H 0.044 0.956 28 H 0.042 0.958 29 H 0.024 0.976 30 H 0.071 0.929 31 H 0.039 0.961 32 H 0.264 0.736 33 H 0.401 0.599 34 H 0.125 0.875 35 H 0.060 0.940 36 H 0.076 0.924 37 H 0.055 0.945 38 H 0.067 0.933 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.033 0.967 44 H 0.071 0.929 45 H 0.067 0.933 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.459 9.199 16.256 20.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.160 4.160 3 C 0.177 3.823 4 H 0.014 0.986 5 C -0.585 4.585 6 H 0.088 0.912 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.795 3.205 10 H -0.184 1.184 11 H -0.204 1.204 12 H -0.210 1.210 13 N -0.352 5.352 14 C 0.318 3.682 15 O -0.468 6.468 16 C -0.206 4.206 17 H 0.157 0.843 18 C -0.100 4.100 19 H 0.112 0.888 20 C -0.157 4.157 21 C -0.128 4.128 22 C -0.181 4.181 23 C -0.169 4.169 24 C -0.078 4.078 25 C -0.182 4.182 26 C -0.162 4.162 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.043 0.957 30 H 0.090 0.910 31 H 0.058 0.942 32 H 0.074 0.926 33 H 0.236 0.764 34 H 0.142 0.858 35 H 0.079 0.921 36 H 0.095 0.905 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.052 0.948 44 H 0.090 0.910 45 H 0.086 0.914 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.964 9.073 15.412 20.473 hybrid contribution 1.207 -0.488 -0.666 1.463 sum -8.757 8.586 14.746 19.179 Atomic orbital electron populations 1.21661 0.97057 0.99010 1.00165 1.21783 0.93674 0.99308 1.01198 1.18331 0.93588 0.89031 0.81394 0.98627 1.21608 0.91455 1.38773 1.06637 0.91178 1.25778 1.03340 0.94391 0.95016 1.70058 1.36988 1.38429 1.09901 0.85325 0.79126 0.77846 0.78204 1.18448 1.20405 1.21000 1.46213 1.15497 1.56032 1.17465 1.20078 0.81559 0.77754 0.88827 1.90628 1.52559 1.61285 1.42337 1.22687 1.02763 0.98331 0.96863 0.84283 1.21324 0.88664 1.02017 0.97951 0.88768 1.21987 0.95231 1.03357 0.95077 1.21795 0.94720 0.99089 0.97197 1.20885 1.00065 1.01319 0.95796 1.20832 1.00649 1.02774 0.92639 1.21697 0.99944 0.88152 0.98021 1.21468 1.02375 0.99959 0.94446 1.21359 1.01812 0.99268 0.93739 0.93680 0.93860 0.95673 0.91014 0.94172 0.92631 0.76449 0.85765 0.92122 0.90501 0.92588 0.91354 0.90507 0.91194 0.91433 0.90758 0.94839 0.91031 0.91376 0.90781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.69 8.51 71.98 0.61 -5.08 16 2 C -0.12 -6.11 5.45 30.60 0.17 -5.95 16 3 C 0.28 14.68 2.24 44.25 0.10 14.78 16 4 H 0.00 -0.26 7.58 -2.39 -0.02 -0.28 16 5 C -0.55 -29.37 8.73 25.60 0.22 -29.15 16 6 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 7 C 0.01 0.80 5.29 84.66 0.45 1.25 16 8 N -0.92 -53.01 11.29 21.45 0.24 -52.76 16 9 Si 0.97 42.50 29.54 68.60 2.03 44.52 16 10 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 11 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 12 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 13 N -0.70 -30.04 5.02 -446.09 -2.24 -32.28 16 14 C 0.53 21.55 4.85 87.66 0.43 21.98 16 15 O -0.59 -28.38 12.34 -3.04 -0.04 -28.42 16 16 C -0.19 -5.52 5.54 -11.54 -0.06 -5.59 16 17 H 0.14 3.40 8.05 -2.39 -0.02 3.38 16 18 C -0.08 -2.20 4.26 -11.54 -0.05 -2.25 16 19 H 0.09 3.10 6.29 -2.39 -0.02 3.09 16 20 C -0.14 -2.94 8.29 25.64 0.21 -2.73 16 21 C -0.13 -2.44 6.05 -16.49 -0.10 -2.54 16 22 C -0.12 -2.42 9.27 71.24 0.66 -1.76 16 23 C -0.11 -1.52 10.11 71.23 0.72 -0.80 16 24 C -0.08 -1.99 2.70 -52.18 -0.14 -2.13 16 25 C -0.13 -3.66 9.73 71.98 0.70 -2.96 16 26 C -0.10 -1.91 8.86 71.98 0.64 -1.27 16 27 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.04 1.97 5.64 -2.39 -0.01 1.95 16 29 H 0.02 1.25 7.85 -2.38 -0.02 1.24 16 30 H 0.07 4.05 5.95 -2.39 -0.01 4.03 16 31 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 33 H 0.40 14.75 8.54 -92.71 -0.79 13.96 16 34 H 0.12 2.24 7.83 -2.91 -0.02 2.21 16 35 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.08 1.18 8.12 -2.39 -0.02 1.16 16 37 H 0.06 1.24 6.49 -2.39 -0.02 1.22 16 38 H 0.07 0.82 7.78 -2.39 -0.02 0.81 16 39 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 40 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.07 1.89 7.84 -2.39 -0.02 1.87 16 43 H 0.03 1.26 5.60 -2.39 -0.01 1.24 16 44 H 0.07 1.13 7.90 -2.38 -0.02 1.11 16 45 H 0.07 1.16 7.88 -2.39 -0.02 1.14 16 46 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -65.88 361.79 4.70 -61.18 By element: Atomic # 1 Polarization: 31.82 SS G_CDS: 0.16 Total: 31.97 kcal Atomic # 6 Polarization: -28.77 SS G_CDS: 4.55 Total: -24.21 kcal Atomic # 7 Polarization: -83.04 SS G_CDS: -2.00 Total: -85.04 kcal Atomic # 8 Polarization: -28.38 SS G_CDS: -0.04 Total: -28.42 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.52 kcal Total: -65.88 4.70 -61.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613038699.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.770 kcal (2) G-P(sol) polarization free energy of solvation -65.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds