Wall clock time and date at job start Tue Mar 31 2020 01:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46838 * 2 1 4 4 C 1.52995 * 109.47029 * 173.78405 * 3 2 1 5 5 C 1.53007 * 109.47420 * 293.78592 * 3 2 1 6 6 N 1.46505 * 109.47135 * 53.78611 * 3 2 1 7 7 C 1.46502 * 120.00058 * 227.34002 * 6 3 2 8 8 C 1.50695 * 109.47442 * 94.39071 * 7 6 3 9 9 H 1.08002 * 119.99574 * 5.06819 * 8 7 6 10 10 C 1.37871 * 120.00484 * 185.06668 * 8 7 6 11 11 N 1.31525 * 119.99709 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00335 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.46967 * 89.99976 * 12 10 8 14 14 H 1.48502 * 109.47034 * 209.99680 * 12 10 8 15 15 H 1.48495 * 109.46844 * 329.99817 * 12 10 8 16 16 C 1.34772 * 119.99992 * 47.33718 * 6 3 2 17 17 O 1.21281 * 119.99934 * 184.93956 * 16 6 3 18 18 C 1.50701 * 119.99850 * 4.93896 * 16 6 3 19 19 H 1.08994 * 115.56040 * 30.24737 * 18 16 6 20 20 C 1.53119 * 117.51404 * 244.43762 * 18 16 6 21 21 C 1.52455 * 59.85925 * 252.55462 * 20 18 16 22 22 C 1.53258 * 128.58435 * 117.60068 * 21 20 18 23 23 C 1.53884 * 86.88446 * 114.94548 * 22 21 20 24 24 C 1.53255 * 128.58679 * 242.39792 * 21 20 18 25 25 H 1.09001 * 109.47107 * 295.48921 * 1 2 3 26 26 H 1.09004 * 109.46991 * 175.48769 * 1 2 3 27 27 H 1.08999 * 109.47786 * 55.48948 * 1 2 3 28 28 H 1.08997 * 109.47258 * 120.00026 * 2 1 3 29 29 H 1.08997 * 109.46613 * 240.00262 * 2 1 3 30 30 H 1.08998 * 109.47040 * 51.94972 * 4 3 2 31 31 H 1.09007 * 109.46873 * 171.94441 * 4 3 2 32 32 H 1.08994 * 109.47294 * 291.94619 * 4 3 2 33 33 H 1.09002 * 109.47129 * 59.99862 * 5 3 2 34 34 H 1.08999 * 109.46950 * 179.97438 * 5 3 2 35 35 H 1.08997 * 109.46765 * 300.00335 * 5 3 2 36 36 H 1.08993 * 109.47415 * 214.39477 * 7 6 3 37 37 H 1.09008 * 109.46916 * 334.39144 * 7 6 3 38 38 H 0.97000 * 119.99868 * 180.02562 * 11 10 8 39 39 H 1.09004 * 117.51199 * 0.02562 * 20 18 16 40 40 H 1.08997 * 117.51122 * 145.10518 * 20 18 16 41 41 H 1.09004 * 113.64799 * 229.44156 * 22 21 20 42 42 H 1.08999 * 113.64605 * 0.44721 * 22 21 20 43 43 H 1.08995 * 113.59068 * 270.39213 * 23 22 21 44 44 H 1.09003 * 113.59151 * 139.57183 * 23 22 21 45 45 H 1.09002 * 113.64232 * 359.55696 * 24 21 20 46 46 H 1.09003 * 113.64878 * 130.46884 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5619 1.4454 0.1562 5 6 1.6614 2.1173 -1.3200 6 7 1.4333 2.1749 1.1144 7 6 0.8501 3.4998 0.8892 8 6 -0.6279 3.3607 0.6302 9 1 -1.1021 2.3939 0.7136 10 6 -1.3749 4.4674 0.2867 11 7 -0.7974 5.6447 0.1846 12 14 -3.2072 4.2950 -0.0337 13 1 -3.9524 4.4941 1.2353 14 1 -3.6346 5.3155 -1.0241 15 1 -3.4909 2.9384 -0.5667 16 6 1.4118 1.6298 2.3468 17 8 0.8315 2.1947 3.2497 18 6 2.1086 0.3184 2.6029 19 1 2.9843 0.1225 1.9843 20 6 1.2401 -0.8784 3.0001 21 6 2.1289 -0.2002 4.0365 22 6 1.7160 0.5259 5.3215 23 6 2.4520 -0.5875 6.0874 24 6 3.3040 -0.7922 4.8223 25 1 -0.3633 0.4422 0.9276 26 1 -0.3633 -1.0245 -0.0809 27 1 -0.3635 0.5822 -0.8468 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 4.0048 0.7839 -0.5884 31 1 3.9399 2.4578 0.0134 32 1 3.8253 1.0967 1.1547 33 1 0.5771 2.1153 -1.4313 34 1 2.0243 3.1451 -1.3197 35 1 2.1127 1.5724 -2.1491 36 1 1.0075 4.1208 1.7710 37 1 1.3278 3.9653 0.0270 38 1 -1.3230 6.4234 -0.0567 39 1 0.1647 -0.7171 3.0757 40 1 1.5443 -1.8621 2.6423 41 1 2.1725 1.5093 5.4340 42 1 0.6394 0.5354 5.4916 43 1 1.8197 -1.4414 6.3302 44 1 3.0218 -0.2252 6.9431 45 1 3.5004 -1.8394 4.5921 46 1 4.2030 -0.1765 4.7946 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000615925231.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:46:35 Heat of formation + Delta-G solvation = 22.804050 kcal Electronic energy + Delta-G solvation = -24018.967068 eV Core-core repulsion = 20910.859200 eV Total energy + Delta-G solvation = -3108.107868 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.42092 -38.49161 -36.45883 -33.83919 -32.79258 -31.51041 -29.95989 -28.21787 -26.23732 -25.49344 -23.93093 -23.09752 -22.85432 -22.02539 -20.20539 -18.30234 -17.79575 -16.51701 -15.81433 -15.64364 -15.07618 -14.68759 -14.45578 -14.17715 -13.98260 -13.70535 -13.13780 -12.67052 -12.57988 -12.28312 -12.17244 -11.95908 -11.84581 -11.65481 -11.43778 -11.35556 -11.29936 -11.01966 -10.99147 -10.82888 -10.70996 -10.36731 -10.29188 -10.16907 -10.06658 -9.92187 -9.72901 -9.46358 -9.16919 -8.68509 -8.35171 -7.49359 -5.97375 -3.99299 3.27888 3.33894 3.40293 3.42688 3.87620 4.17015 4.48641 4.61294 4.79273 4.95502 5.00045 5.07468 5.15126 5.29124 5.35436 5.43250 5.50646 5.57752 5.65559 5.73207 5.81558 5.85034 5.92393 5.93859 5.96837 6.03170 6.10206 6.17673 6.21994 6.29651 6.35541 6.38163 6.44185 6.50625 6.57967 6.58507 6.66356 6.85451 7.07602 7.24023 7.53327 7.70073 8.01238 8.33699 8.60268 9.00877 9.26778 9.64687 11.10656 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.018079 B = 0.006315 C = 0.005529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.377298 B = 4433.012206 C = 5062.622408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.148 4.148 3 C 0.168 3.832 4 C -0.167 4.167 5 C -0.148 4.148 6 N -0.584 5.584 7 C 0.244 3.756 8 C -0.510 4.510 9 H 0.060 0.940 10 C 0.059 3.941 11 N -0.898 5.898 12 Si 0.891 3.109 13 H -0.281 1.281 14 H -0.287 1.287 15 H -0.275 1.275 16 C 0.538 3.462 17 O -0.536 6.536 18 C -0.176 4.176 19 H 0.127 0.873 20 C -0.125 4.125 21 C -0.135 4.135 22 C -0.080 4.080 23 C -0.142 4.142 24 C -0.098 4.098 25 H 0.062 0.938 26 H 0.039 0.961 27 H 0.060 0.940 28 H 0.083 0.917 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.081 0.919 34 H 0.064 0.936 35 H 0.049 0.951 36 H 0.031 0.969 37 H 0.042 0.958 38 H 0.261 0.739 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.085 0.915 42 H 0.068 0.932 43 H 0.077 0.923 44 H 0.065 0.935 45 H 0.064 0.936 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.132 -13.938 2.189 16.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.186 4.186 3 C 0.082 3.918 4 C -0.225 4.225 5 C -0.205 4.205 6 N -0.315 5.315 7 C 0.126 3.874 8 C -0.549 4.549 9 H 0.078 0.922 10 C -0.142 4.142 11 N -0.538 5.538 12 Si 0.719 3.281 13 H -0.207 1.207 14 H -0.213 1.213 15 H -0.200 1.200 16 C 0.324 3.676 17 O -0.414 6.414 18 C -0.197 4.197 19 H 0.145 0.855 20 C -0.162 4.162 21 C -0.136 4.136 22 C -0.118 4.118 23 C -0.180 4.180 24 C -0.136 4.136 25 H 0.081 0.919 26 H 0.058 0.942 27 H 0.079 0.921 28 H 0.101 0.899 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.083 0.917 35 H 0.068 0.932 36 H 0.049 0.951 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.118 0.882 40 H 0.117 0.883 41 H 0.104 0.896 42 H 0.087 0.913 43 H 0.095 0.905 44 H 0.084 0.916 45 H 0.083 0.917 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 8.773 -13.402 2.596 16.227 hybrid contribution -1.039 0.055 -0.480 1.146 sum 7.734 -13.347 2.116 15.571 Atomic orbital electron populations 1.21781 0.95008 0.99900 1.03616 1.22401 0.97555 0.96015 1.02621 1.20291 0.91286 0.91796 0.88394 1.22478 0.96143 1.02296 1.01596 1.22097 1.04057 1.00409 0.93962 1.48245 1.56910 1.20193 1.06192 1.19300 0.93147 0.77568 0.97434 1.21462 0.93292 0.94564 1.45573 0.92162 1.24909 0.98282 0.95227 0.95800 1.69934 1.35851 0.99008 1.49015 0.86603 0.85848 0.77645 0.77956 1.20746 1.21338 1.19996 1.19231 0.80401 0.85013 0.82942 1.90654 1.44037 1.62892 1.43797 1.22749 1.02793 0.95076 0.99038 0.85544 1.22792 0.97939 0.95107 1.00410 1.22327 0.99691 1.02050 0.89531 1.22270 1.00695 0.97135 0.91668 1.22812 0.99114 0.99652 0.96383 1.22474 0.95871 1.00066 0.95145 0.91880 0.94182 0.92061 0.89885 0.92078 0.92175 0.92185 0.92196 0.90015 0.91677 0.93179 0.95099 0.94017 0.92956 0.88188 0.88336 0.89622 0.91336 0.90457 0.91648 0.91694 0.89930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 8.88 37.16 0.33 -2.09 16 2 C -0.15 -2.15 4.32 -26.73 -0.12 -2.26 16 3 C 0.17 2.79 0.70 -131.82 -0.09 2.70 16 4 C -0.17 -2.32 8.41 37.15 0.31 -2.00 16 5 C -0.15 -2.54 7.23 37.16 0.27 -2.27 16 6 N -0.58 -12.18 1.78 -160.18 -0.28 -12.46 16 7 C 0.24 6.27 4.44 -5.19 -0.02 6.25 16 8 C -0.51 -14.08 8.57 -34.44 -0.30 -14.37 16 9 H 0.06 1.68 6.38 -52.49 -0.34 1.34 16 10 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 11 N -0.90 -26.48 13.29 55.43 0.74 -25.75 16 12 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 13 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 14 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 15 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 16 C 0.54 11.22 5.86 -10.99 -0.06 11.15 16 17 O -0.54 -13.44 14.92 5.56 0.08 -13.36 16 18 C -0.18 -2.76 3.29 -91.98 -0.30 -3.06 16 19 H 0.13 1.75 4.06 -51.93 -0.21 1.54 16 20 C -0.13 -1.73 8.87 -26.95 -0.24 -1.97 16 21 C -0.14 -1.93 2.87 -154.80 -0.44 -2.38 16 22 C -0.08 -1.21 6.48 -26.14 -0.17 -1.38 16 23 C -0.14 -1.61 8.08 -25.81 -0.21 -1.82 16 24 C -0.10 -1.11 8.10 -26.14 -0.21 -1.32 16 25 H 0.06 1.24 5.73 -51.93 -0.30 0.94 16 26 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 1.09 6.41 -51.93 -0.33 0.76 16 28 H 0.08 1.12 3.24 -51.93 -0.17 0.95 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 31 H 0.06 0.87 8.13 -51.93 -0.42 0.45 16 32 H 0.06 0.81 5.19 -51.93 -0.27 0.54 16 33 H 0.08 1.60 5.73 -51.93 -0.30 1.31 16 34 H 0.06 1.21 6.45 -51.93 -0.34 0.87 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.03 0.91 7.63 -51.93 -0.40 0.51 16 37 H 0.04 1.09 5.79 -51.92 -0.30 0.79 16 38 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 39 H 0.10 1.55 8.14 -51.93 -0.42 1.12 16 40 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.09 1.41 8.11 -51.93 -0.42 0.99 16 42 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 43 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 343.08 15.07 5.17 5.17 Total: -1.00 -31.10 343.08 -8.24 -39.34 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -7.57 Total: 3.36 kcal Atomic # 6 Polarization: -11.90 SS G_CDS: -1.35 Total: -13.25 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: 0.45 Total: -38.21 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: 0.08 Total: -13.36 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.10 -8.24 -39.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615925231.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.142 kcal (2) G-P(sol) polarization free energy of solvation -31.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds