Wall clock time and date at job start Tue Mar 31 2020 02:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47069 * 2 1 4 4 C 1.52997 * 109.47025 * 120.00105 * 2 1 3 5 5 N 1.46500 * 109.46756 * 177.73490 * 4 2 1 6 6 C 1.46502 * 120.00006 * 290.79945 * 5 4 2 7 7 C 1.50698 * 109.47333 * 265.05079 * 6 5 4 8 8 H 1.08005 * 120.00200 * 1.62931 * 7 6 5 9 9 C 1.37877 * 119.99900 * 181.63411 * 7 6 5 10 10 N 1.31516 * 120.00040 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00082 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47053 * 59.99692 * 11 9 7 13 13 H 1.48499 * 109.47558 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47035 * 300.00211 * 11 9 7 15 15 C 1.34780 * 119.99789 * 110.80845 * 5 4 2 16 16 O 1.21285 * 119.99653 * 179.97438 * 15 5 4 17 17 C 1.50694 * 120.00070 * 359.97438 * 15 5 4 18 18 C 1.53955 * 113.58192 * 279.25023 * 17 15 5 19 19 C 1.53073 * 86.72576 * 220.69084 * 18 17 15 20 20 C 1.52904 * 121.17662 * 150.58482 * 19 18 17 21 21 C 1.53944 * 86.78305 * 100.74756 * 20 19 18 22 22 C 1.52902 * 121.06618 * 259.12309 * 19 18 17 23 23 C 1.52912 * 88.06737 * 24.83289 * 19 18 17 24 24 H 1.09001 * 109.46930 * 299.99951 * 1 2 3 25 25 H 1.09002 * 109.47313 * 59.99633 * 1 2 3 26 26 H 1.08997 * 109.47438 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46930 * 240.00049 * 2 1 3 28 28 H 1.08992 * 109.46886 * 51.34086 * 3 2 1 29 29 H 1.09002 * 109.46888 * 171.34128 * 3 2 1 30 30 H 1.09003 * 109.46776 * 291.34168 * 3 2 1 31 31 H 1.09002 * 109.47001 * 57.73781 * 4 2 1 32 32 H 1.08994 * 109.47282 * 297.73874 * 4 2 1 33 33 H 1.08997 * 109.47045 * 25.05252 * 6 5 4 34 34 H 1.09005 * 109.46640 * 145.04907 * 6 5 4 35 35 H 0.97000 * 119.99830 * 179.97438 * 10 9 7 36 36 H 1.08998 * 112.82653 * 50.33344 * 17 15 5 37 37 H 1.09003 * 113.66008 * 335.13131 * 18 17 15 38 38 H 1.08997 * 113.66487 * 106.19005 * 18 17 15 39 39 H 1.08998 * 113.66603 * 215.22249 * 20 19 18 40 40 H 1.08998 * 113.66145 * 346.27608 * 20 19 18 41 41 H 1.09000 * 113.58365 * 270.13179 * 21 20 19 42 42 H 1.09006 * 113.65102 * 139.34693 * 21 20 19 43 43 H 1.09003 * 113.66671 * 13.62715 * 22 19 18 44 44 H 1.09001 * 113.66536 * 144.68572 * 22 19 18 45 45 H 1.09008 * 113.65756 * 220.70114 * 23 19 18 46 46 H 1.09001 * 113.66620 * 89.64512 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5039 -0.7687 1.2222 6 6 4.1916 -1.6064 0.2365 7 6 4.5173 -2.9426 0.8526 8 1 4.2166 -3.1570 1.8676 9 6 5.1993 -3.8914 0.1207 10 7 5.5661 -3.6301 -1.1149 11 14 5.6037 -5.5473 0.8847 12 1 4.3456 -6.2323 1.2762 13 1 6.3361 -6.3819 -0.1014 14 1 6.4513 -5.3440 2.0870 15 6 4.2181 -0.0417 2.1042 16 8 5.4301 -0.0813 2.0821 17 6 3.5107 0.8203 3.1179 18 6 3.0400 2.1734 2.5543 19 6 3.4982 2.7857 3.8802 20 6 3.9899 4.2315 3.9565 21 6 2.5962 4.5851 4.5064 22 6 2.4935 3.1245 4.9819 23 6 4.4674 1.6122 4.0276 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.5559 1.9990 0.8024 29 1 3.1190 1.4464 0.1547 30 1 1.8085 1.9097 -0.9572 31 1 1.6439 -1.7366 1.2697 32 1 1.7101 -0.1846 2.1387 33 1 3.5459 -1.7533 -0.6292 34 1 5.1135 -1.1163 -0.0768 35 1 6.0462 -4.2975 -1.6297 36 1 2.7358 0.2820 3.6635 37 1 3.6160 2.5130 1.6934 38 1 1.9633 2.2300 2.3943 39 1 4.7951 4.3825 4.6755 40 1 4.2011 4.6737 2.9829 41 1 1.8742 4.8432 3.7316 42 1 2.6183 5.3085 5.3215 43 1 1.5092 2.6823 4.8275 44 1 2.8781 2.9642 5.9892 45 1 4.5294 1.2209 5.0432 46 1 5.4453 1.7937 3.5817 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691879530.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:40 Heat of formation + Delta-G solvation = -6.656737 kcal Electronic energy + Delta-G solvation = -23269.396544 eV Core-core repulsion = 20160.011161 eV Total energy + Delta-G solvation = -3109.385383 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.75233 -38.60073 -36.27666 -34.53471 -33.43801 -32.19997 -27.90645 -27.33384 -25.95110 -25.77200 -25.28811 -24.88786 -22.82058 -21.10648 -19.91802 -18.09068 -17.87915 -16.77015 -16.31343 -15.54309 -15.40941 -15.13674 -14.68133 -14.22089 -14.15029 -13.82847 -13.29430 -12.95518 -12.66909 -12.60926 -12.25122 -12.09635 -11.97888 -11.93706 -11.74621 -11.59703 -11.26354 -11.01456 -10.90391 -10.79114 -10.73236 -10.65699 -10.49825 -10.35175 -10.15313 -10.05578 -9.90278 -9.75578 -9.56355 -8.66812 -8.37932 -7.54268 -5.99238 -4.03111 3.34768 3.38988 3.41608 3.51435 4.01071 4.40175 4.47594 4.51956 4.62840 4.76084 4.85323 4.95404 5.11917 5.22021 5.25970 5.35106 5.39994 5.51922 5.57527 5.60938 5.67011 5.70918 5.76140 5.80487 5.82636 5.92150 5.93258 5.95011 6.01304 6.07634 6.12573 6.14194 6.28132 6.32402 6.35237 6.49827 6.56697 6.63276 6.64667 7.14001 7.51018 7.63963 7.98100 8.29850 8.53695 8.96835 9.21944 9.61714 11.08825 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.019245 B = 0.005121 C = 0.004405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.592368 B = 5466.356709 C = 6355.126369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.115 4.115 3 C -0.153 4.153 4 C 0.116 3.884 5 N -0.594 5.594 6 C 0.249 3.751 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.061 3.939 10 N -0.896 5.896 11 Si 0.896 3.104 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.277 1.277 15 C 0.514 3.486 16 O -0.541 6.541 17 C -0.134 4.134 18 C -0.096 4.096 19 C -0.110 4.110 20 C -0.127 4.127 21 C -0.139 4.139 22 C -0.116 4.116 23 C -0.103 4.103 24 H 0.051 0.949 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.078 0.922 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.046 0.954 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.031 0.969 34 H 0.039 0.961 35 H 0.263 0.737 36 H 0.103 0.897 37 H 0.089 0.911 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.066 0.934 41 H 0.078 0.922 42 H 0.063 0.937 43 H 0.067 0.933 44 H 0.081 0.919 45 H 0.066 0.934 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.942 14.342 7.905 19.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.135 4.135 3 C -0.210 4.210 4 C -0.008 4.008 5 N -0.325 5.325 6 C 0.129 3.871 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.141 4.141 10 N -0.536 5.536 11 Si 0.724 3.276 12 H -0.203 1.203 13 H -0.212 1.212 14 H -0.202 1.202 15 C 0.301 3.699 16 O -0.418 6.418 17 C -0.155 4.155 18 C -0.134 4.134 19 C -0.110 4.110 20 C -0.164 4.164 21 C -0.177 4.177 22 C -0.154 4.154 23 C -0.140 4.140 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.096 0.904 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.049 0.951 34 H 0.057 0.943 35 H 0.072 0.928 36 H 0.121 0.879 37 H 0.108 0.892 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.085 0.915 41 H 0.096 0.904 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.100 0.900 45 H 0.085 0.915 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.189 14.212 7.708 19.110 hybrid contribution 0.165 -1.174 0.286 1.219 sum -10.025 13.038 7.994 18.286 Atomic orbital electron populations 1.21756 0.95246 1.01659 1.01255 1.21496 0.95134 0.96803 1.00034 1.22179 1.01817 0.95893 1.01077 1.21513 0.81669 1.00480 0.97158 1.48184 1.05410 1.44374 1.34516 1.19191 0.92777 0.88777 0.86318 1.21395 1.36446 0.98661 0.99591 0.92672 1.24916 0.95518 0.98771 0.94863 1.69923 1.39530 1.35091 1.09020 0.86585 0.78493 0.83452 0.79044 1.20313 1.21214 1.20223 1.20161 0.87626 0.80162 0.81977 1.90653 1.13975 1.65498 1.71688 1.22698 0.99874 0.95272 0.97672 1.22961 1.00960 0.93604 0.95853 1.22518 0.97649 0.94101 0.96728 1.22729 0.96756 0.95675 1.01287 1.22811 0.97786 0.96540 1.00526 1.22644 0.98729 0.96139 0.97848 1.22663 0.98189 0.94076 0.99120 0.93017 0.92884 0.92614 0.90398 0.92325 0.92090 0.93454 0.91271 0.91173 0.95086 0.94320 0.92767 0.87882 0.89221 0.90453 0.90119 0.91502 0.90382 0.91843 0.91470 0.90004 0.91492 0.88647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.18 37.16 0.34 -1.25 16 2 C -0.12 -1.65 2.96 -90.62 -0.27 -1.92 16 3 C -0.15 -2.02 7.55 37.16 0.28 -1.74 16 4 C 0.12 1.89 4.99 -4.04 -0.02 1.87 16 5 N -0.59 -12.56 1.93 -175.06 -0.34 -12.89 16 6 C 0.25 6.55 5.00 -5.19 -0.03 6.53 16 7 C -0.52 -15.09 9.35 -34.44 -0.32 -15.41 16 8 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 9 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 10 N -0.90 -27.03 13.29 55.43 0.74 -26.30 16 11 Si 0.90 22.30 29.54 -169.99 -5.02 17.28 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 14 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 15 C 0.51 10.81 6.47 -10.99 -0.07 10.74 16 16 O -0.54 -13.96 15.56 5.55 0.09 -13.87 16 17 C -0.13 -2.04 2.73 -90.79 -0.25 -2.29 16 18 C -0.10 -1.20 4.77 -26.20 -0.12 -1.32 16 19 C -0.11 -1.25 1.11 -154.63 -0.17 -1.42 16 20 C -0.13 -1.28 7.84 -26.29 -0.21 -1.49 16 21 C -0.14 -1.21 8.08 -25.75 -0.21 -1.41 16 22 C -0.12 -1.09 7.84 -26.28 -0.21 -1.30 16 23 C -0.10 -1.47 7.16 -26.28 -0.19 -1.66 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.08 1.31 7.07 -51.93 -0.37 0.94 16 28 H 0.06 0.65 5.37 -51.93 -0.28 0.38 16 29 H 0.06 0.96 5.38 -51.93 -0.28 0.68 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.07 0.96 5.59 -51.93 -0.29 0.67 16 33 H 0.03 0.82 6.95 -51.93 -0.36 0.46 16 34 H 0.04 1.16 7.58 -51.93 -0.39 0.77 16 35 H 0.26 7.50 8.31 -40.82 -0.34 7.17 16 36 H 0.10 1.43 7.20 -51.93 -0.37 1.05 16 37 H 0.09 1.23 6.73 -51.93 -0.35 0.88 16 38 H 0.08 0.83 6.18 -51.93 -0.32 0.51 16 39 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.07 0.89 8.14 -51.92 -0.42 0.47 16 46 H 0.10 1.57 7.44 -51.93 -0.39 1.18 16 LS Contribution 351.44 15.07 5.30 5.30 Total: -1.00 -32.42 351.44 -8.79 -41.21 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -8.02 Total: -0.34 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: -1.54 Total: -10.39 kcal Atomic # 7 Polarization: -39.59 SS G_CDS: 0.40 Total: -39.19 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: 0.09 Total: -13.87 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.42 -8.79 -41.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691879530.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.558 kcal (2) G-P(sol) polarization free energy of solvation -32.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds