Wall clock time and date at job start Tue Mar 31 2020 02:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47069 * 2 1 4 4 C 1.52997 * 109.47025 * 120.00105 * 2 1 3 5 5 N 1.46500 * 109.46756 * 177.73490 * 4 2 1 6 6 C 1.46502 * 120.00006 * 290.79945 * 5 4 2 7 7 C 1.50698 * 109.47333 * 265.05079 * 6 5 4 8 8 H 1.08005 * 120.00200 * 1.62931 * 7 6 5 9 9 C 1.37877 * 119.99900 * 181.63411 * 7 6 5 10 10 N 1.31516 * 120.00040 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00082 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47053 * 59.99692 * 11 9 7 13 13 H 1.48499 * 109.47558 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47035 * 300.00211 * 11 9 7 15 15 C 1.34780 * 119.99789 * 110.80845 * 5 4 2 16 16 O 1.21285 * 119.99653 * 179.97438 * 15 5 4 17 17 C 1.50694 * 120.00070 * 359.97438 * 15 5 4 18 18 C 1.53955 * 113.58192 * 279.25023 * 17 15 5 19 19 C 1.53073 * 86.72576 * 220.69084 * 18 17 15 20 20 C 1.52904 * 121.17662 * 150.58482 * 19 18 17 21 21 C 1.53944 * 86.78305 * 100.74756 * 20 19 18 22 22 C 1.52902 * 121.06618 * 259.12309 * 19 18 17 23 23 C 1.52912 * 88.06737 * 24.83289 * 19 18 17 24 24 H 1.09001 * 109.46930 * 299.99951 * 1 2 3 25 25 H 1.09002 * 109.47313 * 59.99633 * 1 2 3 26 26 H 1.08997 * 109.47438 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46930 * 240.00049 * 2 1 3 28 28 H 1.08992 * 109.46886 * 51.34086 * 3 2 1 29 29 H 1.09002 * 109.46888 * 171.34128 * 3 2 1 30 30 H 1.09003 * 109.46776 * 291.34168 * 3 2 1 31 31 H 1.09002 * 109.47001 * 57.73781 * 4 2 1 32 32 H 1.08994 * 109.47282 * 297.73874 * 4 2 1 33 33 H 1.08997 * 109.47045 * 25.05252 * 6 5 4 34 34 H 1.09005 * 109.46640 * 145.04907 * 6 5 4 35 35 H 0.97000 * 119.99830 * 179.97438 * 10 9 7 36 36 H 1.08998 * 112.82653 * 50.33344 * 17 15 5 37 37 H 1.09003 * 113.66008 * 335.13131 * 18 17 15 38 38 H 1.08997 * 113.66487 * 106.19005 * 18 17 15 39 39 H 1.08998 * 113.66603 * 215.22249 * 20 19 18 40 40 H 1.08998 * 113.66145 * 346.27608 * 20 19 18 41 41 H 1.09000 * 113.58365 * 270.13179 * 21 20 19 42 42 H 1.09006 * 113.65102 * 139.34693 * 21 20 19 43 43 H 1.09003 * 113.66671 * 13.62715 * 22 19 18 44 44 H 1.09001 * 113.66536 * 144.68572 * 22 19 18 45 45 H 1.09008 * 113.65756 * 220.70114 * 23 19 18 46 46 H 1.09001 * 113.66620 * 89.64512 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5039 -0.7687 1.2222 6 6 4.1916 -1.6064 0.2365 7 6 4.5173 -2.9426 0.8526 8 1 4.2166 -3.1570 1.8676 9 6 5.1993 -3.8914 0.1207 10 7 5.5661 -3.6301 -1.1149 11 14 5.6037 -5.5473 0.8847 12 1 4.3456 -6.2323 1.2762 13 1 6.3361 -6.3819 -0.1014 14 1 6.4513 -5.3440 2.0870 15 6 4.2181 -0.0417 2.1042 16 8 5.4301 -0.0813 2.0821 17 6 3.5107 0.8203 3.1179 18 6 3.0400 2.1734 2.5543 19 6 3.4982 2.7857 3.8802 20 6 3.9899 4.2315 3.9565 21 6 2.5962 4.5851 4.5064 22 6 2.4935 3.1245 4.9819 23 6 4.4674 1.6122 4.0276 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.5559 1.9990 0.8024 29 1 3.1190 1.4464 0.1547 30 1 1.8085 1.9097 -0.9572 31 1 1.6439 -1.7366 1.2697 32 1 1.7101 -0.1846 2.1387 33 1 3.5459 -1.7533 -0.6292 34 1 5.1135 -1.1163 -0.0768 35 1 6.0462 -4.2975 -1.6297 36 1 2.7358 0.2820 3.6635 37 1 3.6160 2.5130 1.6934 38 1 1.9633 2.2300 2.3943 39 1 4.7951 4.3825 4.6755 40 1 4.2011 4.6737 2.9829 41 1 1.8742 4.8432 3.7316 42 1 2.6183 5.3085 5.3215 43 1 1.5092 2.6823 4.8275 44 1 2.8781 2.9642 5.9892 45 1 4.5294 1.2209 5.0432 46 1 5.4453 1.7937 3.5817 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691879530.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:39 Heat of formation + Delta-G solvation = -24.625010 kcal Electronic energy + Delta-G solvation = -23270.175707 eV Core-core repulsion = 20160.011161 eV Total energy + Delta-G solvation = -3110.164546 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.92043 -39.99510 -37.75947 -35.76524 -35.13079 -34.10153 -29.88525 -28.39065 -27.15905 -26.66168 -26.47169 -26.31168 -24.46278 -22.29638 -21.11917 -19.62243 -18.91230 -18.51186 -18.14445 -17.12754 -16.54787 -16.38965 -16.01329 -15.79302 -15.47458 -15.21768 -14.56486 -14.33713 -14.07673 -13.71102 -13.60895 -13.43778 -13.30281 -13.00529 -12.97612 -12.81406 -12.80008 -12.66925 -12.54065 -12.24958 -12.11090 -11.89703 -11.74364 -11.70402 -11.62042 -11.43701 -11.07589 -10.85479 -10.77599 -10.65266 -10.29897 -9.37125 -8.23383 -6.38202 1.33135 1.38119 1.45283 1.87112 2.31313 2.47313 3.05460 3.46920 3.51525 3.65436 3.77992 3.87836 3.92768 4.02962 4.08379 4.18784 4.32965 4.43546 4.58477 4.64096 4.69021 4.76312 4.80782 4.87234 4.92547 4.93976 4.98319 5.01393 5.03603 5.09796 5.13138 5.14072 5.16812 5.20318 5.22559 5.32742 5.40300 5.47492 5.53474 5.58734 5.60779 5.69529 5.88664 6.06951 6.68610 6.86140 7.27863 7.54770 8.83393 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.019245 B = 0.005121 C = 0.004405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.592368 B = 5466.356709 C = 6355.126369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.113 4.113 3 C -0.147 4.147 4 C 0.111 3.889 5 N -0.596 5.596 6 C 0.267 3.733 7 C -0.542 4.542 8 H 0.050 0.950 9 C 0.007 3.993 10 N -0.929 5.929 11 Si 0.967 3.033 12 H -0.259 1.259 13 H -0.276 1.276 14 H -0.279 1.279 15 C 0.504 3.496 16 O -0.603 6.603 17 C -0.130 4.130 18 C -0.086 4.086 19 C -0.103 4.103 20 C -0.134 4.134 21 C -0.128 4.128 22 C -0.109 4.109 23 C -0.111 4.111 24 H 0.078 0.922 25 H 0.064 0.936 26 H 0.053 0.947 27 H 0.041 0.959 28 H 0.089 0.911 29 H 0.027 0.973 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.108 0.892 33 H 0.021 0.979 34 H -0.012 1.012 35 H 0.267 0.733 36 H 0.130 0.870 37 H 0.071 0.929 38 H 0.108 0.892 39 H 0.081 0.919 40 H 0.061 0.939 41 H 0.088 0.912 42 H 0.076 0.924 43 H 0.082 0.918 44 H 0.088 0.912 45 H 0.075 0.925 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.031 15.265 9.935 22.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.132 4.132 3 C -0.204 4.204 4 C -0.011 4.011 5 N -0.326 5.326 6 C 0.146 3.854 7 C -0.580 4.580 8 H 0.068 0.932 9 C -0.191 4.191 10 N -0.569 5.569 11 Si 0.791 3.209 12 H -0.184 1.184 13 H -0.201 1.201 14 H -0.205 1.205 15 C 0.294 3.706 16 O -0.485 6.485 17 C -0.150 4.150 18 C -0.123 4.123 19 C -0.103 4.103 20 C -0.171 4.171 21 C -0.166 4.166 22 C -0.146 4.146 23 C -0.149 4.149 24 H 0.097 0.903 25 H 0.083 0.917 26 H 0.072 0.928 27 H 0.059 0.941 28 H 0.108 0.892 29 H 0.046 0.954 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.126 0.874 33 H 0.039 0.961 34 H 0.006 0.994 35 H 0.076 0.924 36 H 0.147 0.853 37 H 0.090 0.910 38 H 0.126 0.874 39 H 0.099 0.901 40 H 0.080 0.920 41 H 0.106 0.894 42 H 0.095 0.905 43 H 0.101 0.899 44 H 0.106 0.894 45 H 0.094 0.906 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.338 15.152 9.742 22.414 hybrid contribution 1.188 -1.437 -0.391 1.905 sum -12.150 13.715 9.351 20.571 Atomic orbital electron populations 1.21702 0.91969 1.02243 1.03178 1.21453 0.97716 0.96770 0.97288 1.22138 0.99851 0.95509 1.02852 1.21841 0.78345 1.01002 0.99899 1.48180 1.07589 1.43449 1.33362 1.18587 0.91002 0.88466 0.87393 1.21673 1.37044 0.99876 0.99436 0.93222 1.25859 0.95078 1.02905 0.95308 1.70050 1.39946 1.36530 1.10373 0.85486 0.78861 0.78600 0.77977 1.18354 1.20122 1.20490 1.21294 0.87216 0.79842 0.82261 1.90612 1.16942 1.67498 1.73424 1.22819 1.00371 0.95397 0.96459 1.22908 1.02349 0.91178 0.95898 1.22504 0.97402 0.93566 0.96792 1.22800 0.98231 0.94725 1.01370 1.22785 0.96293 0.96483 1.01011 1.22680 0.98501 0.96365 0.97091 1.22668 0.97302 0.95987 0.98936 0.90300 0.91725 0.92785 0.94085 0.89235 0.95382 0.92494 0.92176 0.87402 0.96088 0.99388 0.92434 0.85265 0.91045 0.87416 0.90053 0.91994 0.89391 0.90516 0.89924 0.89372 0.90627 0.91969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.59 9.18 71.98 0.66 -1.93 16 2 C -0.11 -3.14 2.96 -10.79 -0.03 -3.17 16 3 C -0.15 -3.69 7.55 71.98 0.54 -3.14 16 4 C 0.11 3.55 4.99 86.38 0.43 3.99 16 5 N -0.60 -26.24 1.93 -826.16 -1.59 -27.83 16 6 C 0.27 15.05 5.00 85.63 0.43 15.48 16 7 C -0.54 -32.63 9.35 25.60 0.24 -32.39 16 8 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 9 C 0.01 0.43 5.46 84.65 0.46 0.90 16 10 N -0.93 -58.09 13.29 21.45 0.28 -57.81 16 11 Si 0.97 46.47 29.54 68.60 2.03 48.50 16 12 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 13 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 14 H -0.28 -13.47 7.11 99.48 0.71 -12.77 16 15 C 0.50 22.09 6.47 87.65 0.57 22.66 16 16 O -0.60 -33.43 15.56 -3.04 -0.05 -33.47 16 17 C -0.13 -3.82 2.73 -10.90 -0.03 -3.85 16 18 C -0.09 -1.95 4.77 30.94 0.15 -1.81 16 19 C -0.10 -2.09 1.11 -52.26 -0.06 -2.14 16 20 C -0.13 -2.42 7.84 30.88 0.24 -2.18 16 21 C -0.13 -1.70 8.08 31.23 0.25 -1.45 16 22 C -0.11 -1.58 7.84 30.88 0.24 -1.34 16 23 C -0.11 -3.15 7.16 30.89 0.22 -2.92 16 24 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.04 1.43 7.07 -2.39 -0.02 1.42 16 28 H 0.09 1.66 5.37 -2.39 -0.01 1.64 16 29 H 0.03 0.89 5.38 -2.39 -0.01 0.87 16 30 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.11 2.60 5.59 -2.39 -0.01 2.59 16 33 H 0.02 1.21 6.95 -2.39 -0.02 1.19 16 34 H -0.01 -0.79 7.58 -2.38 -0.02 -0.80 16 35 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 36 H 0.13 3.16 7.20 -2.39 -0.02 3.14 16 37 H 0.07 1.93 6.73 -2.39 -0.02 1.91 16 38 H 0.11 1.79 6.18 -2.39 -0.01 1.77 16 39 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 43 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 46 H 0.06 2.18 7.44 -2.39 -0.02 2.16 16 Total: -1.00 -76.73 351.44 5.93 -70.80 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: 0.94 Total: 13.14 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: 4.32 Total: -13.32 kcal Atomic # 7 Polarization: -84.34 SS G_CDS: -1.31 Total: -85.64 kcal Atomic # 8 Polarization: -33.43 SS G_CDS: -0.05 Total: -33.47 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.50 kcal Total: -76.73 5.93 -70.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691879530.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.177 kcal (2) G-P(sol) polarization free energy of solvation -76.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds