Wall clock time and date at job start Tue Mar 31 2020 02:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47009 * 2 1 4 4 C 1.52999 * 109.46832 * 120.00093 * 2 1 3 5 5 N 1.46497 * 109.47533 * 64.99657 * 4 2 1 6 6 C 1.46496 * 120.00270 * 270.00208 * 5 4 2 7 7 C 1.50698 * 109.46861 * 269.99674 * 6 5 4 8 8 H 1.07997 * 120.00522 * 359.97438 * 7 6 5 9 9 C 1.37879 * 119.99822 * 179.97438 * 7 6 5 10 10 N 1.31514 * 120.00254 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00053 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47054 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.47136 * 119.99926 * 11 9 7 14 14 H 1.48493 * 109.47297 * 240.00215 * 11 9 7 15 15 C 1.34784 * 119.99649 * 89.99910 * 5 4 2 16 16 O 1.21279 * 119.99866 * 180.02562 * 15 5 4 17 17 C 1.50698 * 119.99927 * 0.02562 * 15 5 4 18 18 C 1.50701 * 109.47031 * 179.97438 * 17 15 5 19 19 C 1.29445 * 117.95895 * 94.73363 * 18 17 15 20 20 C 1.50074 * 124.07477 * 180.75080 * 19 18 17 21 21 C 1.53016 * 110.14671 * 342.87319 * 20 19 18 22 22 C 1.53391 * 108.44058 * 49.43435 * 21 20 19 23 23 C 1.50066 * 117.96583 * 275.00349 * 18 17 15 24 24 H 1.09008 * 109.47248 * 60.00528 * 1 2 3 25 25 H 1.08996 * 109.47553 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47164 * 300.00356 * 1 2 3 27 27 H 1.08998 * 109.47164 * 239.99644 * 2 1 3 28 28 H 1.09002 * 109.46944 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47099 * 299.99328 * 3 2 1 30 30 H 1.08998 * 109.47449 * 59.99818 * 3 2 1 31 31 H 1.09008 * 109.47112 * 304.99726 * 4 2 1 32 32 H 1.08997 * 109.46878 * 185.00023 * 4 2 1 33 33 H 1.08998 * 109.47213 * 29.99790 * 6 5 4 34 34 H 1.08997 * 109.47106 * 149.99741 * 6 5 4 35 35 H 0.96997 * 120.00021 * 179.97438 * 10 9 7 36 36 H 1.08999 * 109.47012 * 59.99745 * 17 15 5 37 37 H 1.08997 * 109.47081 * 299.99927 * 17 15 5 38 38 H 1.07999 * 117.96176 * 0.73020 * 19 18 17 39 39 H 1.09002 * 109.35609 * 222.66402 * 20 19 18 40 40 H 1.09003 * 109.35439 * 103.08085 * 20 19 18 41 41 H 1.09003 * 109.64533 * 289.75036 * 21 20 19 42 42 H 1.09000 * 109.64519 * 169.11862 * 21 20 19 43 43 H 1.09001 * 109.64689 * 172.88318 * 22 21 20 44 44 H 1.09003 * 109.64136 * 52.25083 * 22 21 20 45 45 H 1.09003 * 109.35468 * 282.79297 * 23 18 17 46 46 H 1.08998 * 109.35916 * 42.51411 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 7 1.6523 -2.1328 1.1907 6 6 0.3744 -2.5659 1.7613 7 6 0.5715 -2.9407 3.2076 8 1 1.5507 -2.8645 3.6566 9 6 -0.4984 -3.3811 3.9575 10 7 -1.6908 -3.4745 3.4106 11 14 -0.2543 -3.8451 5.7504 12 1 1.1703 -3.6519 6.1222 13 1 -1.1097 -2.9835 6.6056 14 1 -0.6296 -5.2680 5.9490 15 6 2.4714 -3.0331 0.6117 16 8 2.1504 -4.2016 0.5627 17 6 3.7862 -2.5877 0.0251 18 6 4.5061 -3.7776 -0.5554 19 6 4.3584 -4.0194 -1.8184 20 6 4.9971 -5.1738 -2.5338 21 6 6.1435 -5.7438 -1.6959 22 6 5.6332 -5.9736 -0.2678 23 6 5.3447 -4.6119 0.3680 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9562 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 1.6053 -0.2617 2.1370 32 1 3.1262 -0.6444 1.2952 33 1 -0.3485 -1.7531 1.6919 34 1 0.0041 -3.4297 1.2093 35 1 -2.4434 -3.7846 3.9381 36 1 4.3990 -2.1383 0.8065 37 1 3.6037 -1.8543 -0.7603 38 1 3.7366 -3.3490 -2.3930 39 1 5.3855 -4.8336 -3.4938 40 1 4.2518 -5.9510 -2.7028 41 1 6.9724 -5.0362 -1.6793 42 1 6.4744 -6.6903 -2.1234 43 1 6.3933 -6.4956 0.3135 44 1 4.7185 -6.5658 -0.2964 45 1 6.2858 -4.0983 0.5646 46 1 4.8107 -4.7596 1.3067 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701251792.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:59 Heat of formation + Delta-G solvation = -54.063601 kcal Electronic energy + Delta-G solvation = -22817.488060 eV Core-core repulsion = 19706.046961 eV Total energy + Delta-G solvation = -3111.441099 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.51051 -38.04293 -36.23297 -33.55555 -32.64081 -32.16066 -30.57577 -28.41455 -26.82505 -26.58901 -25.27018 -23.19018 -22.66545 -21.37556 -20.18786 -18.28901 -17.39775 -16.51501 -16.12445 -15.88285 -15.10107 -14.68917 -14.48591 -14.30774 -13.84133 -13.78815 -13.54755 -13.03164 -12.90654 -12.46203 -12.33482 -12.14789 -12.04789 -11.99751 -11.95517 -11.49571 -11.39457 -11.27710 -10.93214 -10.91108 -10.67858 -10.65544 -10.42884 -10.34044 -10.22220 -10.09089 -10.02664 -9.52843 -8.96157 -8.41280 -8.38423 -7.55585 -6.01270 -4.05247 2.47517 3.30773 3.38303 3.41879 3.53832 4.08310 4.47715 4.78820 4.85131 5.02288 5.07600 5.17318 5.23624 5.31502 5.33187 5.39156 5.48958 5.53942 5.63997 5.70879 5.75812 5.76261 5.82760 5.87032 5.90813 5.94012 6.05558 6.07520 6.12054 6.18793 6.20780 6.27490 6.32146 6.32948 6.46899 6.58668 6.71701 6.85942 7.16702 7.26711 7.49896 7.62973 7.96134 8.28942 8.51361 8.95297 9.19905 9.59761 11.06623 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.012865 B = 0.005740 C = 0.004355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.868040 B = 4877.290806 C = 6427.192469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.114 4.114 3 C -0.143 4.143 4 C 0.116 3.884 5 N -0.597 5.597 6 C 0.243 3.757 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.061 3.939 10 N -0.895 5.895 11 Si 0.896 3.104 12 H -0.274 1.274 13 H -0.284 1.284 14 H -0.283 1.283 15 C 0.507 3.493 16 O -0.535 6.535 17 C -0.112 4.112 18 C -0.087 4.087 19 C -0.160 4.160 20 C -0.084 4.084 21 C -0.118 4.118 22 C -0.118 4.118 23 C -0.081 4.081 24 H 0.044 0.956 25 H 0.068 0.932 26 H 0.056 0.944 27 H 0.065 0.935 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.081 0.919 32 H 0.064 0.936 33 H 0.039 0.961 34 H 0.040 0.960 35 H 0.262 0.738 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.098 0.902 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.068 0.932 45 H 0.067 0.933 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.158 5.137 -9.753 17.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.134 4.134 3 C -0.201 4.201 4 C -0.009 4.009 5 N -0.329 5.329 6 C 0.124 3.876 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.141 4.141 10 N -0.535 5.535 11 Si 0.723 3.277 12 H -0.199 1.199 13 H -0.210 1.210 14 H -0.209 1.209 15 C 0.294 3.706 16 O -0.412 6.412 17 C -0.152 4.152 18 C -0.087 4.087 19 C -0.178 4.178 20 C -0.121 4.121 21 C -0.156 4.156 22 C -0.156 4.156 23 C -0.117 4.117 24 H 0.063 0.937 25 H 0.087 0.913 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.099 0.901 32 H 0.082 0.918 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.071 0.929 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.116 0.884 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.087 0.913 45 H 0.085 0.915 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 12.764 4.463 -9.716 16.650 hybrid contribution -0.125 -0.062 1.083 1.092 sum 12.639 4.401 -8.633 15.926 Atomic orbital electron populations 1.21925 0.94643 1.03069 1.00911 1.21585 0.97092 0.95761 0.98917 1.21780 1.00518 0.96058 1.01751 1.21526 0.98980 0.82534 0.97841 1.48213 1.21830 1.06241 1.56590 1.19370 0.78821 0.96276 0.93176 1.21496 0.94986 1.44102 0.95607 0.92567 1.24921 0.95081 0.95507 0.98601 1.69939 0.99810 1.47239 1.36470 0.86482 0.78116 0.78224 0.84834 1.19857 1.21016 1.20928 1.20235 0.85277 0.86195 0.78939 1.90668 1.74974 1.17434 1.58120 1.20956 0.95467 0.97470 1.01348 1.20339 0.97716 0.96351 0.94329 1.21745 1.01228 0.99318 0.95544 1.20361 0.97339 0.96519 0.97888 1.21591 0.97745 1.00371 0.95875 1.21572 1.01235 0.97158 0.95609 1.20345 0.98304 0.94634 0.98467 0.93696 0.91274 0.92525 0.91692 0.92934 0.92893 0.92491 0.90066 0.91767 0.94270 0.94204 0.92858 0.89247 0.89350 0.88408 0.91703 0.91106 0.92059 0.92135 0.92073 0.91336 0.91499 0.90555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 8.18 37.16 0.30 -1.98 16 2 C -0.11 -1.57 3.12 -90.62 -0.28 -1.86 16 3 C -0.14 -1.55 9.19 37.16 0.34 -1.21 16 4 C 0.12 1.87 4.70 -4.04 -0.02 1.86 16 5 N -0.60 -12.55 2.28 -175.07 -0.40 -12.95 16 6 C 0.24 6.31 4.23 -5.20 -0.02 6.28 16 7 C -0.52 -14.89 9.39 -34.44 -0.32 -15.21 16 8 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 9 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 10 N -0.90 -26.73 13.29 55.43 0.74 -25.99 16 11 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 12 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 14 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 15 C 0.51 10.63 7.67 -10.98 -0.08 10.54 16 16 O -0.53 -13.64 15.61 5.56 0.09 -13.56 16 17 C -0.11 -1.73 4.26 -29.04 -0.12 -1.86 16 18 C -0.09 -1.32 4.33 -100.94 -0.44 -1.75 16 19 C -0.16 -2.27 9.37 -35.90 -0.34 -2.60 16 20 C -0.08 -1.00 6.11 -28.18 -0.17 -1.17 16 21 C -0.12 -1.30 6.01 -26.52 -0.16 -1.46 16 22 C -0.12 -1.51 6.01 -26.52 -0.16 -1.67 16 23 C -0.08 -1.15 5.80 -28.18 -0.16 -1.31 16 24 H 0.04 0.60 8.14 -51.92 -0.42 0.18 16 25 H 0.07 1.28 5.89 -51.93 -0.31 0.97 16 26 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.06 0.90 7.30 -51.93 -0.38 0.52 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 1.39 8.07 -51.92 -0.42 0.97 16 32 H 0.06 0.88 6.44 -51.93 -0.33 0.55 16 33 H 0.04 1.02 5.98 -51.93 -0.31 0.71 16 34 H 0.04 1.19 7.42 -51.93 -0.39 0.80 16 35 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.09 1.23 7.37 -51.93 -0.38 0.84 16 37 H 0.09 1.18 6.92 -51.93 -0.36 0.82 16 38 H 0.10 1.34 7.74 -52.49 -0.41 0.94 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.06 0.63 8.12 -51.93 -0.42 0.21 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.07 1.00 8.12 -51.93 -0.42 0.58 16 45 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 360.95 15.07 5.44 5.44 Total: -1.00 -32.38 360.95 -9.21 -41.59 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -8.32 Total: 0.21 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: -1.73 Total: -11.76 kcal Atomic # 7 Polarization: -39.28 SS G_CDS: 0.34 Total: -38.95 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: 0.09 Total: -13.56 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.38 -9.21 -41.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701251792.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.472 kcal (2) G-P(sol) polarization free energy of solvation -32.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds