Wall clock time and date at job start Tue Mar 31 2020 02:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47160 * 2 1 4 4 C 1.50703 * 109.47232 * 240.00272 * 2 1 3 5 5 H 1.07996 * 120.00056 * 240.00135 * 4 2 1 6 6 C 1.37875 * 119.99838 * 59.99978 * 4 2 1 7 7 N 1.31513 * 120.00380 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99604 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47356 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46668 * 120.00055 * 8 6 4 11 11 H 1.48497 * 109.47125 * 239.99349 * 8 6 4 12 12 C 1.52999 * 109.47452 * 120.00078 * 2 1 3 13 13 N 1.46499 * 109.46822 * 300.00241 * 12 2 1 14 14 C 1.34777 * 119.99584 * 179.97438 * 13 12 2 15 15 O 1.21278 * 120.00351 * 0.02562 * 14 13 12 16 16 C 1.50703 * 119.99823 * 180.02562 * 14 13 12 17 17 C 1.53002 * 109.47207 * 180.02562 * 16 14 13 18 18 C 1.52997 * 109.47206 * 179.97438 * 17 16 14 19 19 C 1.53006 * 109.47127 * 0.02562 * 18 17 16 20 20 C 1.52999 * 109.46626 * 299.99539 * 19 18 17 21 21 C 1.52997 * 109.46991 * 60.00378 * 20 19 18 22 22 C 1.52997 * 109.47164 * 59.99836 * 19 18 17 23 23 C 1.52999 * 109.47232 * 60.00018 * 16 14 13 24 24 H 1.09000 * 109.47176 * 299.99668 * 1 2 3 25 25 H 1.09000 * 109.46846 * 60.00099 * 1 2 3 26 26 H 1.09004 * 109.46527 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47375 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47436 * 300.00628 * 3 2 1 29 29 H 1.09000 * 109.46805 * 60.00104 * 3 2 1 30 30 H 0.97002 * 119.99963 * 179.97438 * 7 6 4 31 31 H 1.08998 * 109.47362 * 180.02562 * 12 2 1 32 32 H 1.08999 * 109.46951 * 59.99785 * 12 2 1 33 33 H 0.96997 * 120.00420 * 359.97438 * 13 12 2 34 34 H 1.08998 * 109.47006 * 60.00037 * 17 16 14 35 35 H 1.08999 * 109.47160 * 299.99704 * 17 16 14 36 36 H 1.09001 * 109.47502 * 240.00500 * 18 17 16 37 37 H 1.09001 * 109.47289 * 120.00297 * 18 17 16 38 38 H 1.09000 * 109.47050 * 179.97438 * 19 18 17 39 39 H 1.09002 * 109.46719 * 180.02562 * 20 19 18 40 40 H 1.08993 * 109.47839 * 299.99931 * 20 19 18 41 41 H 1.09006 * 109.47073 * 239.99153 * 21 20 19 42 42 H 1.09008 * 109.47182 * 119.99786 * 21 20 19 43 43 H 1.09001 * 109.47375 * 59.99966 * 22 19 18 44 44 H 1.09002 * 109.46777 * 180.02562 * 22 19 18 45 45 H 1.08997 * 109.47345 * 300.00425 * 23 16 14 46 46 H 1.08999 * 109.47218 * 60.00245 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3226 -1.1194 -4.0080 9 1 3.1475 -2.2862 -3.6039 10 1 1.1678 -1.5864 -4.8166 11 1 3.1472 -0.1855 -4.8161 12 6 2.0401 -0.7212 1.2492 13 7 1.5517 -0.0307 2.4453 14 6 1.8769 -0.4915 3.6694 15 8 2.5743 -1.4775 3.7807 16 6 1.3741 0.2186 4.8999 17 6 1.8843 -0.5026 6.1492 18 6 1.3743 0.2186 7.3984 19 6 0.5236 1.4203 6.9820 20 6 1.3730 2.3822 6.1489 21 6 1.8830 1.6610 4.8997 22 6 -0.6664 0.9388 6.1496 23 6 -0.1559 0.2184 4.8994 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 0.7088 1.1614 -3.4844 31 1 3.1300 -0.7208 1.2494 32 1 1.6767 -1.7489 1.2492 33 1 0.9943 0.7582 2.3564 34 1 2.9743 -0.5021 6.1493 35 1 1.5214 -1.5304 6.1490 36 1 2.2221 0.5614 7.9917 37 1 0.7689 -0.4665 7.9919 38 1 0.1599 1.9338 7.8720 39 1 0.7671 3.2385 5.8526 40 1 2.2208 2.7252 6.7419 41 1 2.9730 1.6615 4.8993 42 1 1.5192 2.1746 4.0096 43 1 -1.2715 0.2535 6.7432 44 1 -1.2721 1.7949 5.8526 45 1 -0.5190 0.7324 4.0095 46 1 -0.5191 -0.8093 4.8991 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710105124.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:17 Heat of formation + Delta-G solvation = -74.287430 kcal Electronic energy + Delta-G solvation = -23335.038724 eV Core-core repulsion = 20222.720654 eV Total energy + Delta-G solvation = -3112.318070 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.03084 -38.41637 -36.28968 -33.34822 -31.85214 -30.98399 -30.94458 -30.44396 -25.72438 -25.68462 -24.99248 -22.81391 -22.77538 -22.47734 -20.00225 -18.79450 -17.51491 -16.57000 -15.98303 -15.86306 -15.75478 -15.03141 -14.77177 -14.37430 -14.09564 -13.08907 -12.97218 -12.82122 -12.70009 -12.25737 -12.19820 -12.14950 -12.10583 -12.03471 -11.97282 -11.86634 -11.34844 -11.19530 -10.86829 -10.65803 -10.51596 -10.50012 -10.38180 -10.18954 -9.90604 -9.89600 -9.62877 -9.42740 -9.06858 -8.76235 -8.43327 -8.27001 -6.01851 -4.11700 3.11086 3.27248 3.35872 3.40590 3.78469 4.40266 4.41076 4.48970 4.63342 5.05173 5.13330 5.20920 5.24647 5.25086 5.25367 5.30887 5.34457 5.34502 5.39460 5.52303 5.87203 5.91287 5.95831 6.09849 6.16815 6.19294 6.21939 6.25766 6.28555 6.31956 6.35700 6.36127 6.52238 6.80447 6.82868 6.95117 7.02562 7.08185 7.36519 7.56090 7.69973 8.01315 8.09654 8.18793 8.39437 8.77302 8.89671 9.54172 10.99546 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.035718 B = 0.004051 C = 0.003909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.729543 B = 6909.818895 C = 7161.054437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.055 3.945 3 C -0.130 4.130 4 C -0.504 4.504 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.892 3.108 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.284 1.284 12 C 0.131 3.869 13 N -0.714 5.714 14 C 0.513 3.487 15 O -0.553 6.553 16 C -0.071 4.071 17 C -0.092 4.092 18 C -0.113 4.113 19 C -0.088 4.088 20 C -0.110 4.110 21 C -0.107 4.107 22 C -0.110 4.110 23 C -0.107 4.107 24 H 0.005 0.995 25 H 0.085 0.915 26 H 0.026 0.974 27 H 0.026 0.974 28 H 0.085 0.915 29 H 0.005 0.995 30 H 0.259 0.741 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.397 0.603 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.062 0.938 44 H 0.064 0.936 45 H 0.068 0.932 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.955 4.177 17.245 17.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.055 3.945 3 C -0.187 4.187 4 C -0.543 4.543 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.720 3.280 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.009 3.991 13 N -0.365 5.365 14 C 0.298 3.702 15 O -0.432 6.432 16 C -0.075 4.075 17 C -0.130 4.130 18 C -0.150 4.150 19 C -0.106 4.106 20 C -0.148 4.148 21 C -0.145 4.145 22 C -0.148 4.148 23 C -0.145 4.145 24 H 0.024 0.976 25 H 0.104 0.896 26 H 0.045 0.955 27 H 0.045 0.955 28 H 0.104 0.896 29 H 0.024 0.976 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.232 0.768 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.081 0.919 44 H 0.083 0.917 45 H 0.087 0.913 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.528 3.573 17.136 17.687 hybrid contribution 0.068 -0.095 -1.030 1.036 sum -2.460 3.478 16.107 16.661 Atomic orbital electron populations 1.21821 0.97778 0.99140 1.00019 1.18359 0.92782 0.92754 0.90638 1.21820 0.98552 0.98363 1.00015 1.21030 1.31328 1.12048 0.89901 0.92426 1.24877 0.94870 0.94929 0.98838 1.69813 1.36765 1.22814 1.23077 0.86527 0.78647 0.79767 0.83019 1.19767 1.21070 1.21065 1.21699 0.98058 0.95766 0.83602 1.46324 1.52494 1.31653 1.06004 1.20461 0.80462 0.84547 0.84759 1.90645 1.38725 1.26820 1.87012 1.20679 0.96619 0.96176 0.93987 1.21307 1.01000 0.98831 0.91836 1.21582 0.99260 0.96860 0.97327 1.21057 0.95566 0.96073 0.97938 1.21527 0.99386 0.97677 0.96198 1.21539 1.00994 0.93251 0.98673 1.21539 0.97055 1.00010 0.96188 1.21554 0.92860 1.01380 0.98663 0.97558 0.89616 0.95476 0.95478 0.89619 0.97566 0.93092 0.92860 0.92856 0.76795 0.91402 0.91395 0.91999 0.92005 0.91228 0.91725 0.91888 0.91471 0.91326 0.91876 0.91727 0.91322 0.91475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 2 C 0.06 1.29 0.50 -155.66 -0.08 1.21 16 3 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 4 C -0.50 -13.28 8.01 -34.44 -0.28 -13.56 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 6 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 7 N -0.89 -23.60 9.35 55.43 0.52 -23.08 16 8 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 9 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 12 C 0.13 2.83 4.50 -4.04 -0.02 2.82 16 13 N -0.71 -12.90 4.74 -60.30 -0.29 -13.19 16 14 C 0.51 9.04 6.48 -10.98 -0.07 8.97 16 15 O -0.55 -11.83 15.98 5.56 0.09 -11.74 16 16 C -0.07 -0.94 0.61 -155.68 -0.10 -1.04 16 17 C -0.09 -1.16 4.28 -26.73 -0.11 -1.27 16 18 C -0.11 -1.09 5.71 -26.73 -0.15 -1.24 16 19 C -0.09 -0.79 3.19 -90.62 -0.29 -1.08 16 20 C -0.11 -1.03 5.71 -26.73 -0.15 -1.18 16 21 C -0.11 -1.25 4.88 -26.76 -0.13 -1.38 16 22 C -0.11 -1.03 5.71 -26.71 -0.15 -1.18 16 23 C -0.11 -1.25 4.89 -26.71 -0.13 -1.38 16 24 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 25 H 0.09 2.14 6.07 -51.93 -0.32 1.82 16 26 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.09 2.14 6.07 -51.93 -0.32 1.82 16 29 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 30 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 31 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 33 H 0.40 6.54 4.99 -40.82 -0.20 6.34 16 34 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 35 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.07 0.80 7.56 -51.92 -0.39 0.41 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.07 0.80 7.56 -51.93 -0.39 0.41 16 46 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 340.80 15.07 5.14 5.14 Total: -1.00 -28.12 340.80 -8.93 -37.05 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -8.21 Total: 3.98 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: -1.15 Total: -13.92 kcal Atomic # 7 Polarization: -36.50 SS G_CDS: 0.23 Total: -36.27 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.09 Total: -11.74 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -28.12 -8.93 -37.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710105124.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.241 kcal (2) G-P(sol) polarization free energy of solvation -28.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds