Wall clock time and date at job start Tue Mar 31 2020 02:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47160 * 2 1 4 4 C 1.50703 * 109.47232 * 240.00272 * 2 1 3 5 5 H 1.07996 * 120.00056 * 240.00135 * 4 2 1 6 6 C 1.37875 * 119.99838 * 59.99978 * 4 2 1 7 7 N 1.31513 * 120.00380 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99604 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47356 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46668 * 120.00055 * 8 6 4 11 11 H 1.48497 * 109.47125 * 239.99349 * 8 6 4 12 12 C 1.52999 * 109.47452 * 120.00078 * 2 1 3 13 13 N 1.46499 * 109.46822 * 300.00241 * 12 2 1 14 14 C 1.34777 * 119.99584 * 179.97438 * 13 12 2 15 15 O 1.21278 * 120.00351 * 0.02562 * 14 13 12 16 16 C 1.50703 * 119.99823 * 180.02562 * 14 13 12 17 17 C 1.53002 * 109.47207 * 180.02562 * 16 14 13 18 18 C 1.52997 * 109.47206 * 179.97438 * 17 16 14 19 19 C 1.53006 * 109.47127 * 0.02562 * 18 17 16 20 20 C 1.52999 * 109.46626 * 299.99539 * 19 18 17 21 21 C 1.52997 * 109.46991 * 60.00378 * 20 19 18 22 22 C 1.52997 * 109.47164 * 59.99836 * 19 18 17 23 23 C 1.52999 * 109.47232 * 60.00018 * 16 14 13 24 24 H 1.09000 * 109.47176 * 299.99668 * 1 2 3 25 25 H 1.09000 * 109.46846 * 60.00099 * 1 2 3 26 26 H 1.09004 * 109.46527 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47375 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47436 * 300.00628 * 3 2 1 29 29 H 1.09000 * 109.46805 * 60.00104 * 3 2 1 30 30 H 0.97002 * 119.99963 * 179.97438 * 7 6 4 31 31 H 1.08998 * 109.47362 * 180.02562 * 12 2 1 32 32 H 1.08999 * 109.46951 * 59.99785 * 12 2 1 33 33 H 0.96997 * 120.00420 * 359.97438 * 13 12 2 34 34 H 1.08998 * 109.47006 * 60.00037 * 17 16 14 35 35 H 1.08999 * 109.47160 * 299.99704 * 17 16 14 36 36 H 1.09001 * 109.47502 * 240.00500 * 18 17 16 37 37 H 1.09001 * 109.47289 * 120.00297 * 18 17 16 38 38 H 1.09000 * 109.47050 * 179.97438 * 19 18 17 39 39 H 1.09002 * 109.46719 * 180.02562 * 20 19 18 40 40 H 1.08993 * 109.47839 * 299.99931 * 20 19 18 41 41 H 1.09006 * 109.47073 * 239.99153 * 21 20 19 42 42 H 1.09008 * 109.47182 * 119.99786 * 21 20 19 43 43 H 1.09001 * 109.47375 * 59.99966 * 22 19 18 44 44 H 1.09002 * 109.46777 * 180.02562 * 22 19 18 45 45 H 1.08997 * 109.47345 * 300.00425 * 23 16 14 46 46 H 1.08999 * 109.47218 * 60.00245 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3226 -1.1194 -4.0080 9 1 3.1475 -2.2862 -3.6039 10 1 1.1678 -1.5864 -4.8166 11 1 3.1472 -0.1855 -4.8161 12 6 2.0401 -0.7212 1.2492 13 7 1.5517 -0.0307 2.4453 14 6 1.8769 -0.4915 3.6694 15 8 2.5743 -1.4775 3.7807 16 6 1.3741 0.2186 4.8999 17 6 1.8843 -0.5026 6.1492 18 6 1.3743 0.2186 7.3984 19 6 0.5236 1.4203 6.9820 20 6 1.3730 2.3822 6.1489 21 6 1.8830 1.6610 4.8997 22 6 -0.6664 0.9388 6.1496 23 6 -0.1559 0.2184 4.8994 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 0.7088 1.1614 -3.4844 31 1 3.1300 -0.7208 1.2494 32 1 1.6767 -1.7489 1.2492 33 1 0.9943 0.7582 2.3564 34 1 2.9743 -0.5021 6.1493 35 1 1.5214 -1.5304 6.1490 36 1 2.2221 0.5614 7.9917 37 1 0.7689 -0.4665 7.9919 38 1 0.1599 1.9338 7.8720 39 1 0.7671 3.2385 5.8526 40 1 2.2208 2.7252 6.7419 41 1 2.9730 1.6615 4.8993 42 1 1.5192 2.1746 4.0096 43 1 -1.2715 0.2535 6.7432 44 1 -1.2721 1.7949 5.8526 45 1 -0.5190 0.7324 4.0095 46 1 -0.5191 -0.8093 4.8991 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710105124.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:17 Heat of formation + Delta-G solvation = -88.706623 kcal Electronic energy + Delta-G solvation = -23335.663988 eV Core-core repulsion = 20222.720654 eV Total energy + Delta-G solvation = -3112.943333 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.10664 -39.78447 -38.06449 -35.06955 -33.19899 -32.18069 -31.79883 -31.64456 -27.58546 -27.51415 -26.83435 -23.92182 -23.59089 -23.43727 -21.31663 -20.62328 -18.83488 -17.79591 -17.42481 -16.99924 -16.82296 -16.64888 -16.25985 -15.87702 -15.54310 -14.81956 -14.47645 -14.14334 -13.91652 -13.86296 -13.25888 -13.12657 -13.02822 -13.01760 -12.94479 -12.94316 -12.86158 -12.82481 -12.66172 -12.57385 -12.26896 -12.15246 -11.50699 -11.44680 -11.33602 -11.26569 -10.75538 -10.74060 -10.71193 -10.44865 -10.41282 -9.94238 -8.03638 -6.19370 1.40171 1.44338 1.53793 1.68284 2.31649 2.49417 3.19854 3.51699 3.61192 3.62490 4.13217 4.22507 4.33890 4.37675 4.42408 4.43832 4.45139 4.47908 4.47998 4.49726 4.50599 4.69080 4.74789 4.96789 5.03075 5.05910 5.11868 5.12071 5.16916 5.17172 5.28829 5.33726 5.37137 5.37239 5.38858 5.48147 5.49189 5.49778 5.58733 5.65254 5.65912 6.13014 6.19630 6.42103 6.67007 6.84423 7.31937 7.48396 8.95462 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.035718 B = 0.004051 C = 0.003909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.729543 B = 6909.818895 C = 7161.054437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.051 3.949 3 C -0.119 4.119 4 C -0.529 4.529 5 H 0.042 0.958 6 C 0.030 3.970 7 N -0.898 5.898 8 Si 0.945 3.055 9 H -0.277 1.277 10 H -0.280 1.280 11 H -0.280 1.280 12 C 0.147 3.853 13 N -0.707 5.707 14 C 0.508 3.492 15 O -0.595 6.595 16 C -0.064 4.064 17 C -0.092 4.092 18 C -0.108 4.108 19 C -0.086 4.086 20 C -0.106 4.106 21 C -0.107 4.107 22 C -0.106 4.106 23 C -0.107 4.107 24 H 0.036 0.964 25 H 0.064 0.936 26 H 0.017 0.983 27 H 0.017 0.983 28 H 0.064 0.936 29 H 0.036 0.964 30 H 0.261 0.739 31 H 0.035 0.965 32 H 0.035 0.965 33 H 0.407 0.593 34 H 0.050 0.950 35 H 0.050 0.950 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.095 0.905 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.055 0.945 42 H 0.069 0.931 43 H 0.072 0.928 44 H 0.079 0.921 45 H 0.069 0.931 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.074 5.760 18.969 20.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.051 3.949 3 C -0.177 4.177 4 C -0.568 4.568 5 H 0.060 0.940 6 C -0.170 4.170 7 N -0.537 5.537 8 Si 0.772 3.228 9 H -0.202 1.202 10 H -0.206 1.206 11 H -0.206 1.206 12 C 0.023 3.977 13 N -0.358 5.358 14 C 0.296 3.704 15 O -0.477 6.477 16 C -0.067 4.067 17 C -0.131 4.131 18 C -0.145 4.145 19 C -0.104 4.104 20 C -0.144 4.144 21 C -0.145 4.145 22 C -0.144 4.144 23 C -0.145 4.145 24 H 0.055 0.945 25 H 0.082 0.918 26 H 0.036 0.964 27 H 0.036 0.964 28 H 0.082 0.918 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.244 0.756 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.113 0.887 39 H 0.098 0.902 40 H 0.091 0.909 41 H 0.074 0.926 42 H 0.088 0.912 43 H 0.091 0.909 44 H 0.098 0.902 45 H 0.088 0.912 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.666 5.182 18.871 19.910 hybrid contribution 0.451 -0.636 -1.574 1.757 sum -3.215 4.546 17.297 18.171 Atomic orbital electron populations 1.21656 0.97028 0.98614 1.00383 1.18359 0.93311 0.93055 0.90213 1.21655 0.97859 0.97782 1.00379 1.21284 1.31717 1.12125 0.91634 0.93975 1.25435 0.95104 0.95589 1.00897 1.69906 1.36934 1.23252 1.23571 0.85711 0.78159 0.78711 0.80246 1.20178 1.20622 1.20608 1.21260 0.96805 0.95019 0.84603 1.46157 1.52596 1.31747 1.05296 1.21393 0.79342 0.84005 0.85693 1.90621 1.40574 1.28845 1.87618 1.20694 0.97870 0.96699 0.91447 1.21313 0.99968 0.98441 0.93340 1.21576 1.00017 0.97244 0.95666 1.21098 0.95007 0.95558 0.98720 1.21540 1.00072 0.97852 0.94912 1.21577 1.00366 0.92131 1.00454 1.21552 0.97454 1.00471 0.94900 1.21593 0.91219 1.01270 1.00447 0.94535 0.91752 0.96402 0.96400 0.91754 0.94543 0.92981 0.94695 0.94692 0.75584 0.93143 0.93137 0.90911 0.90915 0.88657 0.90193 0.90897 0.92640 0.91227 0.90883 0.90197 0.91223 0.92643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.33 8.08 71.98 0.58 -4.75 16 2 C 0.05 2.41 0.50 -52.93 -0.03 2.38 16 3 C -0.12 -5.33 8.08 71.98 0.58 -4.75 16 4 C -0.53 -28.40 8.01 25.60 0.21 -28.19 16 5 H 0.04 2.33 7.74 -2.91 -0.02 2.31 16 6 C 0.03 1.57 5.15 84.65 0.44 2.00 16 7 N -0.90 -47.89 9.35 21.45 0.20 -47.69 16 8 Si 0.94 42.91 29.54 68.60 2.03 44.94 16 9 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 10 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 12 C 0.15 6.50 4.50 86.38 0.39 6.89 16 13 N -0.71 -25.45 4.74 -463.07 -2.20 -27.64 16 14 C 0.51 18.11 6.48 87.66 0.57 18.67 16 15 O -0.60 -26.34 15.98 -3.02 -0.05 -26.39 16 16 C -0.06 -1.63 0.61 -52.94 -0.03 -1.66 16 17 C -0.09 -2.28 4.28 30.59 0.13 -2.15 16 18 C -0.11 -1.78 5.71 30.60 0.17 -1.61 16 19 C -0.09 -1.19 3.19 -10.79 -0.03 -1.22 16 20 C -0.11 -1.60 5.71 30.59 0.17 -1.42 16 21 C -0.11 -2.30 4.88 30.58 0.15 -2.15 16 22 C -0.11 -1.60 5.71 30.61 0.17 -1.42 16 23 C -0.11 -2.30 4.89 30.61 0.15 -2.15 16 24 H 0.04 1.37 6.86 -2.39 -0.02 1.35 16 25 H 0.06 3.19 6.07 -2.39 -0.01 3.17 16 26 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.06 3.19 6.07 -2.39 -0.01 3.17 16 29 H 0.04 1.36 6.86 -2.39 -0.02 1.35 16 30 H 0.26 13.33 8.31 -92.71 -0.77 12.56 16 31 H 0.03 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.03 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.41 12.85 4.99 -92.71 -0.46 12.39 16 34 H 0.05 1.39 8.10 -2.39 -0.02 1.37 16 35 H 0.05 1.39 8.10 -2.39 -0.02 1.37 16 36 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 42 H 0.07 1.47 7.56 -2.38 -0.02 1.45 16 43 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.07 1.47 7.56 -2.39 -0.02 1.45 16 46 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -61.63 340.80 4.08 -57.55 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: 0.48 Total: 20.77 kcal Atomic # 6 Polarization: -25.16 SS G_CDS: 3.62 Total: -21.54 kcal Atomic # 7 Polarization: -73.33 SS G_CDS: -2.00 Total: -75.33 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: -0.05 Total: -26.39 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -61.63 4.08 -57.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710105124.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.154 kcal (2) G-P(sol) polarization free energy of solvation -61.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds