Wall clock time and date at job start Tue Mar 31 2020 02:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46869 * 2 1 4 4 C 1.53004 * 109.47135 * 119.99688 * 2 1 3 5 5 N 1.46498 * 109.47039 * 177.49398 * 4 2 1 6 6 C 1.46501 * 120.00102 * 276.53907 * 5 4 2 7 7 C 1.50697 * 109.47115 * 274.23176 * 6 5 4 8 8 H 1.07998 * 119.99835 * 355.07805 * 7 6 5 9 9 C 1.37877 * 119.99817 * 175.35789 * 7 6 5 10 10 N 1.31509 * 120.00275 * 359.72014 * 9 7 6 11 11 Si 1.86799 * 119.99813 * 179.72773 * 9 7 6 12 12 H 1.48497 * 109.47296 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.47252 * 119.99917 * 11 9 7 14 14 H 1.48501 * 109.46869 * 239.99341 * 11 9 7 15 15 C 1.34778 * 119.99860 * 96.53919 * 5 4 2 16 16 O 1.21282 * 119.99945 * 184.90858 * 15 5 4 17 17 C 1.50696 * 119.99894 * 4.90916 * 15 5 4 18 18 C 1.53002 * 109.47458 * 183.86665 * 17 15 5 19 19 H 1.09008 * 110.42906 * 52.45773 * 18 17 15 20 20 C 1.54892 * 110.48683 * 289.78044 * 18 17 15 21 21 C 1.54882 * 102.74704 * 203.37569 * 20 18 17 22 22 C 1.54268 * 104.19969 * 37.94122 * 21 20 18 23 23 H 1.08999 * 117.76496 * 116.75191 * 22 21 20 24 24 C 1.55474 * 118.29801 * 272.80635 * 22 21 20 25 25 C 1.53000 * 59.84168 * 93.28982 * 24 22 21 26 26 H 1.08996 * 119.30045 * 111.70748 * 25 24 22 27 27 H 1.09004 * 109.47037 * 300.00099 * 1 2 3 28 28 H 1.08992 * 109.47187 * 60.00009 * 1 2 3 29 29 H 1.09003 * 109.46683 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47560 * 239.99831 * 2 1 3 31 31 H 1.08995 * 109.47468 * 305.70181 * 3 2 1 32 32 H 1.09000 * 109.47534 * 65.70814 * 3 2 1 33 33 H 1.09001 * 109.46907 * 185.70407 * 3 2 1 34 34 H 1.09000 * 109.46573 * 57.49468 * 4 2 1 35 35 H 1.08995 * 109.47278 * 297.49985 * 4 2 1 36 36 H 1.09002 * 109.46806 * 154.23046 * 6 5 4 37 37 H 1.09000 * 109.47124 * 34.23484 * 6 5 4 38 38 H 0.96995 * 120.00453 * 180.02562 * 10 9 7 39 39 H 1.08998 * 109.47522 * 303.86883 * 17 15 5 40 40 H 1.09000 * 109.47252 * 63.86981 * 17 15 5 41 41 H 1.09006 * 110.75111 * 321.69044 * 20 18 17 42 42 H 1.08996 * 110.76184 * 85.05489 * 20 18 17 43 43 H 1.09001 * 110.48725 * 279.25939 * 21 20 18 44 44 H 1.09007 * 110.49011 * 156.61801 * 21 20 18 45 45 H 1.09000 * 118.06160 * 346.14650 * 24 22 21 46 46 H 1.09003 * 117.18095 * 200.81996 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5038 -0.7737 1.2195 6 6 4.1837 -1.8293 0.4647 7 6 4.3177 -3.0573 1.3279 8 1 4.0072 -3.0270 2.3619 9 6 4.8421 -4.2177 0.7992 10 7 5.2202 -4.2545 -0.4598 11 14 5.0153 -5.7376 1.8713 12 1 4.5219 -5.4373 3.2393 13 1 4.2182 -6.8472 1.2895 14 1 6.4443 -6.1364 1.9373 15 6 4.2249 0.1492 1.8864 16 8 5.4338 0.1598 1.7899 17 6 3.5291 1.1677 2.7520 18 6 4.5598 2.1490 3.3139 19 1 5.1660 2.5660 2.5097 20 6 5.4564 1.4501 4.3659 21 6 5.9667 2.6357 5.2218 22 6 4.7541 3.5847 5.3151 23 1 4.3280 3.7687 6.3013 24 6 4.5528 4.6364 4.1878 25 6 3.8595 3.2752 4.1018 26 1 2.7749 3.2221 4.1963 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.5957 1.9850 -0.8345 32 1 1.7625 1.9260 0.9367 33 1 3.1252 1.4442 -0.1021 34 1 1.6404 -1.7351 1.2720 35 1 1.7138 -0.1821 2.1387 36 1 5.1740 -1.4837 0.1682 37 1 3.6023 -2.0721 -0.4247 38 1 5.5888 -5.0709 -0.8319 39 1 2.7968 1.7120 2.1556 40 1 3.0237 0.6613 3.5743 41 1 4.8721 0.7585 4.9731 42 1 6.2876 0.9353 3.8843 43 1 6.8021 3.1315 4.7273 44 1 6.2592 2.2919 6.2141 45 1 5.3825 4.8220 3.5057 46 1 3.9330 5.5025 4.4198 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716839562.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:29 Heat of formation + Delta-G solvation = -49.130492 kcal Electronic energy + Delta-G solvation = -22949.072055 eV Core-core repulsion = 19837.844871 eV Total energy + Delta-G solvation = -3111.227184 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.22909 -39.88959 -37.69014 -35.53227 -34.09165 -33.48452 -31.47532 -29.57992 -28.09660 -27.05669 -26.44922 -24.38693 -23.44242 -21.42001 -21.26513 -20.35615 -19.66009 -18.59576 -17.89032 -17.24099 -16.66260 -16.57686 -15.94071 -15.73043 -15.50543 -14.73954 -14.49394 -14.40351 -14.08615 -13.93809 -13.77624 -13.59234 -13.30282 -13.07328 -12.88634 -12.81493 -12.63229 -12.55897 -12.26897 -12.15822 -12.07480 -11.95975 -11.82087 -11.67404 -11.60360 -11.59071 -11.27899 -10.87439 -10.66608 -10.49074 -10.41896 -9.34693 -8.23267 -6.38959 1.34694 1.36958 1.49016 1.89959 2.31410 2.47313 2.76392 3.05757 3.51897 3.76070 3.79974 3.90926 3.95798 4.06905 4.24063 4.26773 4.36031 4.40457 4.50599 4.55199 4.58618 4.65437 4.71237 4.77329 4.80542 4.90368 4.94601 4.99520 5.01828 5.06973 5.07906 5.11144 5.13372 5.24680 5.26418 5.29707 5.40667 5.41637 5.43633 5.51705 5.56888 5.59190 5.88066 6.06453 6.70838 6.85998 7.27791 7.54814 8.83655 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.014446 B = 0.005460 C = 0.004285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.840886 B = 5127.401714 C = 6533.027541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.114 4.114 3 C -0.143 4.143 4 C 0.111 3.889 5 N -0.602 5.602 6 C 0.263 3.737 7 C -0.541 4.541 8 H 0.053 0.947 9 C 0.007 3.993 10 N -0.929 5.929 11 Si 0.968 3.032 12 H -0.266 1.266 13 H -0.269 1.269 14 H -0.282 1.282 15 C 0.499 3.501 16 O -0.598 6.598 17 C -0.128 4.128 18 C -0.045 4.045 19 H 0.054 0.946 20 C -0.119 4.119 21 C -0.094 4.094 22 C -0.167 4.167 23 H 0.128 0.872 24 C -0.150 4.150 25 C -0.158 4.158 26 H 0.130 0.870 27 H 0.077 0.923 28 H 0.065 0.935 29 H 0.053 0.947 30 H 0.042 0.958 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.023 0.977 34 H 0.065 0.935 35 H 0.104 0.896 36 H -0.007 1.007 37 H 0.015 0.985 38 H 0.267 0.733 39 H 0.122 0.878 40 H 0.106 0.894 41 H 0.063 0.937 42 H 0.041 0.959 43 H 0.059 0.941 44 H 0.077 0.923 45 H 0.082 0.918 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.717 16.123 9.113 21.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.133 4.133 3 C -0.200 4.200 4 C -0.011 4.011 5 N -0.332 5.332 6 C 0.141 3.859 7 C -0.580 4.580 8 H 0.072 0.928 9 C -0.191 4.191 10 N -0.569 5.569 11 Si 0.792 3.208 12 H -0.190 1.190 13 H -0.194 1.194 14 H -0.208 1.208 15 C 0.289 3.711 16 O -0.480 6.480 17 C -0.167 4.167 18 C -0.064 4.064 19 H 0.073 0.927 20 C -0.157 4.157 21 C -0.132 4.132 22 C -0.185 4.185 23 H 0.146 0.854 24 C -0.187 4.187 25 C -0.176 4.176 26 H 0.148 0.852 27 H 0.096 0.904 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.042 0.958 34 H 0.084 0.916 35 H 0.122 0.878 36 H 0.012 0.988 37 H 0.033 0.967 38 H 0.076 0.924 39 H 0.140 0.860 40 H 0.124 0.876 41 H 0.082 0.918 42 H 0.060 0.940 43 H 0.077 0.923 44 H 0.096 0.904 45 H 0.101 0.899 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -10.034 15.984 8.919 20.874 hybrid contribution 0.825 -1.458 -0.267 1.696 sum -9.209 14.526 8.653 19.253 Atomic orbital electron populations 1.21705 0.92015 1.02259 1.03202 1.21501 0.97735 0.96583 0.97507 1.21944 0.99406 0.95509 1.03140 1.21817 0.78472 1.01509 0.99316 1.48173 1.07572 1.27871 1.49586 1.18625 0.91416 0.84803 0.91029 1.21734 1.42145 0.96699 0.97399 0.92832 1.25874 0.94598 1.02239 0.96425 1.70066 1.43104 1.29131 1.14605 0.85359 0.77881 0.78635 0.78887 1.18991 1.19384 1.20760 1.21370 0.87303 0.82210 0.80244 1.90606 1.16807 1.74769 1.65769 1.22000 0.99552 0.95643 0.99547 1.21234 0.94918 0.93698 0.96501 0.92721 1.22696 0.98860 0.97713 0.96424 1.21919 0.96756 0.94553 0.99948 1.23693 0.98368 1.01758 0.94635 0.85445 1.23525 1.02574 0.92416 1.00183 1.23256 0.98904 0.95265 1.00182 0.85194 0.90430 0.91563 0.92811 0.93908 0.91210 0.90026 0.95815 0.91633 0.87823 0.98850 0.96655 0.92429 0.86046 0.87597 0.91818 0.93995 0.92272 0.90397 0.89938 0.86184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.61 9.19 71.98 0.66 -1.95 16 2 C -0.11 -3.12 3.14 -10.79 -0.03 -3.15 16 3 C -0.14 -3.49 7.68 71.98 0.55 -2.94 16 4 C 0.11 3.57 4.92 86.38 0.42 4.00 16 5 N -0.60 -26.19 2.19 -826.16 -1.81 -28.00 16 6 C 0.26 14.71 5.26 85.63 0.45 15.16 16 7 C -0.54 -31.83 9.39 25.60 0.24 -31.59 16 8 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 9 C 0.01 0.44 5.46 84.66 0.46 0.90 16 10 N -0.93 -57.26 13.29 21.45 0.28 -56.97 16 11 Si 0.97 45.45 29.54 68.60 2.03 47.48 16 12 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 13 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 14 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 15 C 0.50 21.06 6.26 87.66 0.55 21.61 16 16 O -0.60 -31.35 14.12 -3.04 -0.04 -31.40 16 17 C -0.13 -3.66 3.50 29.85 0.10 -3.55 16 18 C -0.04 -1.25 2.24 -9.72 -0.02 -1.27 16 19 H 0.05 1.80 7.96 -2.38 -0.02 1.78 16 20 C -0.12 -3.63 5.72 31.88 0.18 -3.45 16 21 C -0.09 -2.22 6.64 31.67 0.21 -2.01 16 22 C -0.17 -3.14 7.04 -9.21 -0.06 -3.20 16 23 H 0.13 1.92 8.14 -2.39 -0.02 1.90 16 24 C -0.15 -2.60 10.21 31.45 0.32 -2.28 16 25 C -0.16 -3.12 6.27 -10.07 -0.06 -3.18 16 26 H 0.13 2.01 8.05 -2.39 -0.02 1.99 16 27 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.04 1.45 7.99 -2.39 -0.02 1.43 16 31 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.08 1.54 5.97 -2.39 -0.01 1.53 16 33 H 0.02 0.73 7.04 -2.39 -0.02 0.71 16 34 H 0.07 2.28 8.12 -2.39 -0.02 2.26 16 35 H 0.10 2.53 6.26 -2.39 -0.01 2.51 16 36 H -0.01 -0.43 7.24 -2.39 -0.02 -0.45 16 37 H 0.02 0.89 7.95 -2.39 -0.02 0.87 16 38 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 39 H 0.12 2.76 4.31 -2.39 -0.01 2.75 16 40 H 0.11 2.64 7.68 -2.39 -0.02 2.62 16 41 H 0.06 1.89 7.97 -2.38 -0.02 1.87 16 42 H 0.04 1.60 7.19 -2.39 -0.02 1.58 16 43 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 45 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 46 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -74.25 356.48 5.36 -68.89 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: 0.93 Total: 16.90 kcal Atomic # 6 Polarization: -20.88 SS G_CDS: 3.98 Total: -16.90 kcal Atomic # 7 Polarization: -83.44 SS G_CDS: -1.53 Total: -84.97 kcal Atomic # 8 Polarization: -31.35 SS G_CDS: -0.04 Total: -31.40 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -74.25 5.36 -68.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716839562.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.761 kcal (2) G-P(sol) polarization free energy of solvation -74.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds