Wall clock time and date at job start Tue Mar 31 2020 02:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46732 * 2 1 4 4 C 1.52999 * 109.47265 * 119.99667 * 2 1 3 5 5 N 1.46498 * 109.46830 * 62.69786 * 4 2 1 6 6 C 1.46497 * 120.00325 * 83.19887 * 5 4 2 7 7 C 1.50701 * 109.47026 * 94.65585 * 6 5 4 8 8 H 1.07996 * 120.00511 * 4.79218 * 7 6 5 9 9 C 1.37880 * 119.99817 * 184.78588 * 7 6 5 10 10 N 1.31517 * 120.00113 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00032 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47304 * 90.00411 * 11 9 7 13 13 H 1.48508 * 109.47321 * 210.00393 * 11 9 7 14 14 H 1.48495 * 109.47329 * 330.00317 * 11 9 7 15 15 C 1.34785 * 119.99608 * 263.19306 * 5 4 2 16 16 O 1.21282 * 119.99912 * 175.23486 * 15 5 4 17 17 C 1.50694 * 119.99823 * 355.24025 * 15 5 4 18 18 C 1.53005 * 109.46771 * 174.77350 * 17 15 5 19 19 H 1.09000 * 110.43514 * 52.45769 * 18 17 15 20 20 C 1.54891 * 110.48584 * 289.77224 * 18 17 15 21 21 C 1.54893 * 102.74764 * 203.38135 * 20 18 17 22 22 C 1.54272 * 104.19539 * 37.94164 * 21 20 18 23 23 H 1.09001 * 117.40992 * 196.41274 * 22 21 20 24 24 C 1.53000 * 118.19827 * 40.56894 * 22 21 20 25 25 C 1.53008 * 60.37743 * 266.38248 * 24 22 21 26 26 H 1.08993 * 119.75091 * 248.87407 * 25 24 22 27 27 H 1.08998 * 109.47438 * 65.24591 * 1 2 3 28 28 H 1.09006 * 109.46860 * 185.25056 * 1 2 3 29 29 H 1.08997 * 109.47218 * 305.24204 * 1 2 3 30 30 H 1.08998 * 109.46920 * 240.00186 * 2 1 3 31 31 H 1.08998 * 109.47266 * 60.00398 * 3 2 1 32 32 H 1.08999 * 109.47181 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47388 * 299.99947 * 3 2 1 34 34 H 1.08998 * 109.46768 * 182.69189 * 4 2 1 35 35 H 1.08996 * 109.47669 * 302.69093 * 4 2 1 36 36 H 1.09005 * 109.47012 * 214.65704 * 6 5 4 37 37 H 1.08995 * 109.47005 * 334.65539 * 6 5 4 38 38 H 0.97002 * 120.00126 * 179.97438 * 10 9 7 39 39 H 1.09000 * 109.46964 * 294.77166 * 17 15 5 40 40 H 1.08990 * 109.47599 * 54.77192 * 17 15 5 41 41 H 1.09001 * 110.75075 * 321.69435 * 20 18 17 42 42 H 1.08997 * 110.75506 * 85.06191 * 20 18 17 43 43 H 1.08998 * 110.48504 * 279.26402 * 21 20 18 44 44 H 1.08998 * 110.48470 * 156.62066 * 21 20 18 45 45 H 1.08999 * 117.46076 * 158.78605 * 24 22 21 46 46 H 1.08994 * 117.46419 * 13.98164 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6055 -2.1198 1.2172 6 6 2.3747 -3.1087 0.4579 7 6 3.3491 -3.8002 1.3763 8 1 3.3385 -3.5862 2.4348 9 6 4.2541 -4.7061 0.8652 10 7 4.2673 -4.9665 -0.4239 11 14 5.4615 -5.5638 2.0036 12 1 4.8589 -6.8252 2.5046 13 1 6.7093 -5.8725 1.2600 14 1 5.7761 -4.6756 3.1513 15 6 0.4980 -2.4969 1.8865 16 8 0.0893 -3.6347 1.7905 17 6 -0.2325 -1.5046 2.7540 18 6 -1.5147 -2.1437 3.2912 19 1 -1.2929 -3.0974 3.7700 20 6 -2.5451 -2.3332 2.1503 21 6 -3.8927 -2.3854 2.9121 22 6 -3.7298 -1.3466 4.0409 23 1 -4.4342 -1.3933 4.8713 24 6 -3.0287 -0.0268 3.7131 25 6 -2.2178 -1.1929 4.2820 26 1 -1.8085 -1.1263 5.2899 27 1 -0.3634 0.4303 -0.9332 28 1 -0.3633 -1.0234 0.0940 29 1 -0.3633 0.5930 0.8393 30 1 1.8933 -0.5138 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 3.1299 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 3.1289 -0.6795 1.2736 35 1 1.6379 -0.2360 2.1386 36 1 1.6956 -3.8450 0.0278 37 1 2.9212 -2.6081 -0.3413 38 1 4.9043 -5.6036 -0.7835 39 1 0.4053 -1.2129 3.5885 40 1 -0.4852 -0.6234 2.1645 41 1 -2.5217 -1.4865 1.4642 42 1 -2.3652 -3.2676 1.6187 43 1 -4.0570 -3.3791 3.3289 44 1 -4.7146 -2.1066 2.2527 45 1 -3.2197 0.8209 4.3712 46 1 -2.8858 0.2187 2.6608 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716839565.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:33 Heat of formation + Delta-G solvation = -50.175000 kcal Electronic energy + Delta-G solvation = -23134.225729 eV Core-core repulsion = 20022.953252 eV Total energy + Delta-G solvation = -3111.272477 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.35448 -40.05695 -37.68044 -35.52629 -34.08650 -33.27853 -31.32869 -29.57906 -28.10087 -27.05498 -26.44710 -24.54421 -24.12169 -21.38490 -20.59138 -20.25298 -19.38073 -18.58210 -18.10053 -17.14828 -17.05709 -16.49602 -16.21866 -15.56451 -15.27887 -14.76846 -14.51338 -14.46031 -14.30583 -13.87530 -13.74424 -13.41627 -13.30739 -13.20039 -12.85665 -12.77561 -12.64500 -12.40809 -12.28727 -12.19414 -12.06910 -11.92685 -11.79293 -11.75810 -11.62146 -11.50430 -11.44586 -10.88082 -10.66479 -10.56890 -10.28793 -9.34839 -8.23344 -6.38414 1.34221 1.37396 1.47164 1.92063 2.31727 2.47477 2.87256 3.05603 3.50488 3.74194 3.82025 3.94398 4.01524 4.05526 4.18704 4.28392 4.34235 4.41001 4.46440 4.55315 4.56380 4.71966 4.73748 4.81068 4.82287 4.90883 4.93067 4.96969 5.03168 5.08268 5.08973 5.11102 5.15169 5.23440 5.30039 5.33272 5.39102 5.41042 5.45089 5.50545 5.51393 5.58363 5.88882 6.07381 6.69783 6.86951 7.27940 7.56797 8.83346 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.016467 B = 0.005260 C = 0.004396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.925971 B = 5321.618161 C = 6368.020947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.113 4.113 3 C -0.134 4.134 4 C 0.110 3.890 5 N -0.603 5.603 6 C 0.266 3.734 7 C -0.541 4.541 8 H 0.050 0.950 9 C 0.008 3.992 10 N -0.929 5.929 11 Si 0.967 3.033 12 H -0.281 1.281 13 H -0.273 1.273 14 H -0.262 1.262 15 C 0.499 3.501 16 O -0.597 6.597 17 C -0.126 4.126 18 C -0.047 4.047 19 H 0.055 0.945 20 C -0.122 4.122 21 C -0.094 4.094 22 C -0.167 4.167 23 H 0.122 0.878 24 C -0.136 4.136 25 C -0.169 4.169 26 H 0.118 0.882 27 H 0.064 0.936 28 H 0.027 0.973 29 H 0.082 0.918 30 H 0.043 0.957 31 H 0.076 0.924 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.103 0.897 36 H -0.012 1.012 37 H 0.020 0.980 38 H 0.267 0.733 39 H 0.103 0.897 40 H 0.119 0.881 41 H 0.072 0.928 42 H 0.041 0.959 43 H 0.064 0.936 44 H 0.076 0.924 45 H 0.120 0.880 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.375 16.578 7.223 21.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.133 4.133 3 C -0.192 4.192 4 C -0.012 4.012 5 N -0.333 5.333 6 C 0.145 3.855 7 C -0.580 4.580 8 H 0.068 0.932 9 C -0.191 4.191 10 N -0.569 5.569 11 Si 0.791 3.209 12 H -0.207 1.207 13 H -0.198 1.198 14 H -0.187 1.187 15 C 0.289 3.711 16 O -0.478 6.478 17 C -0.165 4.165 18 C -0.066 4.066 19 H 0.073 0.927 20 C -0.160 4.160 21 C -0.131 4.131 22 C -0.185 4.185 23 H 0.140 0.860 24 C -0.172 4.172 25 C -0.187 4.187 26 H 0.136 0.864 27 H 0.083 0.917 28 H 0.046 0.954 29 H 0.100 0.900 30 H 0.062 0.938 31 H 0.095 0.905 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.121 0.879 36 H 0.006 0.994 37 H 0.038 0.962 38 H 0.076 0.924 39 H 0.121 0.879 40 H 0.137 0.863 41 H 0.090 0.910 42 H 0.060 0.940 43 H 0.083 0.917 44 H 0.095 0.905 45 H 0.138 0.862 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -12.470 15.883 7.026 21.381 hybrid contribution 1.043 -1.429 -0.050 1.770 sum -11.427 14.454 6.976 19.702 Atomic orbital electron populations 1.21934 0.94599 1.00583 1.02974 1.21497 0.96826 0.97536 0.97422 1.21706 1.01020 0.93268 1.03189 1.21827 1.00133 0.79820 0.99449 1.48206 1.25689 1.09980 1.49455 1.18593 0.89165 0.86774 0.90987 1.21701 1.17273 1.24651 0.94327 0.93210 1.25853 0.99382 0.97097 0.96756 1.70054 1.37917 1.35463 1.13421 0.85429 0.78032 0.78607 0.78826 1.20666 1.19780 1.18657 1.21380 0.80355 0.89031 0.80314 1.90610 1.67859 1.23590 1.65756 1.21913 0.96906 0.98267 0.99437 1.21235 0.92917 0.97137 0.95265 0.92663 1.22501 0.95216 1.01013 0.97255 1.21899 0.96657 0.98174 0.96408 1.23194 0.95517 0.98518 1.01294 0.85960 1.22992 1.00536 0.91296 1.02401 1.23077 0.93999 1.01704 0.99956 0.86398 0.91689 0.95383 0.89951 0.93830 0.90472 0.92781 0.91558 0.91643 0.87899 0.99368 0.96176 0.92409 0.87901 0.86341 0.90956 0.94008 0.91743 0.90491 0.86210 0.88858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.47 7.69 71.98 0.55 -2.91 16 2 C -0.11 -3.07 3.13 -10.79 -0.03 -3.10 16 3 C -0.13 -2.58 9.19 71.98 0.66 -1.92 16 4 C 0.11 3.53 4.87 86.38 0.42 3.95 16 5 N -0.60 -26.31 2.18 -826.17 -1.80 -28.12 16 6 C 0.27 14.92 5.18 85.63 0.44 15.36 16 7 C -0.54 -32.23 9.35 25.60 0.24 -31.99 16 8 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 9 C 0.01 0.47 5.46 84.65 0.46 0.93 16 10 N -0.93 -57.37 13.29 21.45 0.28 -57.09 16 11 Si 0.97 45.96 29.54 68.60 2.03 47.99 16 12 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 13 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 14 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 15 C 0.50 21.27 5.95 87.65 0.52 21.79 16 16 O -0.60 -31.67 14.54 -3.04 -0.04 -31.71 16 17 C -0.13 -3.66 3.46 29.85 0.10 -3.56 16 18 C -0.05 -1.32 2.39 -9.72 -0.02 -1.34 16 19 H 0.05 1.92 7.82 -2.39 -0.02 1.90 16 20 C -0.12 -3.44 5.31 31.89 0.17 -3.27 16 21 C -0.09 -2.08 6.77 31.67 0.21 -1.86 16 22 C -0.17 -3.05 7.06 -10.07 -0.07 -3.12 16 23 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 24 C -0.14 -2.10 9.83 30.60 0.30 -1.80 16 25 C -0.17 -3.42 6.42 -10.07 -0.06 -3.49 16 26 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.03 0.85 6.09 -2.38 -0.01 0.83 16 29 H 0.08 1.49 6.80 -2.39 -0.02 1.47 16 30 H 0.04 1.45 8.13 -2.39 -0.02 1.44 16 31 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.07 2.24 8.12 -2.39 -0.02 2.22 16 35 H 0.10 2.54 6.26 -2.39 -0.01 2.53 16 36 H -0.01 -0.76 7.50 -2.38 -0.02 -0.78 16 37 H 0.02 1.16 8.02 -2.39 -0.02 1.14 16 38 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 39 H 0.10 2.65 7.86 -2.39 -0.02 2.63 16 40 H 0.12 2.78 4.39 -2.39 -0.01 2.77 16 41 H 0.07 1.85 7.21 -2.39 -0.02 1.83 16 42 H 0.04 1.49 7.45 -2.39 -0.02 1.47 16 43 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.08 1.47 8.14 -2.39 -0.02 1.46 16 45 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 46 H 0.09 1.46 7.21 -2.39 -0.02 1.44 16 Total: -1.00 -74.61 355.17 5.29 -69.31 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: 0.93 Total: 15.94 kcal Atomic # 6 Polarization: -20.23 SS G_CDS: 3.90 Total: -16.33 kcal Atomic # 7 Polarization: -83.68 SS G_CDS: -1.52 Total: -85.20 kcal Atomic # 8 Polarization: -31.67 SS G_CDS: -0.04 Total: -31.71 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -74.61 5.29 -69.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716839565.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.139 kcal (2) G-P(sol) polarization free energy of solvation -74.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds