Wall clock time and date at job start Tue Mar 31 2020 02:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.46998 * 2 1 4 4 C 1.52999 * 109.47507 * 120.00266 * 2 1 3 5 5 N 1.46497 * 109.47082 * 174.63392 * 4 2 1 6 6 C 1.46494 * 120.00106 * 272.93917 * 5 4 2 7 7 C 1.50701 * 109.47454 * 263.21390 * 6 5 4 8 8 H 1.07995 * 119.99505 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00093 * 179.97438 * 7 6 5 10 10 N 1.31510 * 119.99940 * 179.97438 * 9 7 6 11 11 Si 1.86808 * 120.00070 * 0.02562 * 9 7 6 12 12 H 1.48492 * 109.47126 * 89.99610 * 11 9 7 13 13 H 1.48499 * 109.46667 * 209.99701 * 11 9 7 14 14 H 1.48500 * 109.46651 * 329.99473 * 11 9 7 15 15 C 1.34780 * 119.99859 * 92.94172 * 5 4 2 16 16 O 1.21280 * 119.99627 * 4.45498 * 15 5 4 17 17 C 1.50704 * 119.99728 * 184.45297 * 15 5 4 18 18 C 1.51870 * 108.55491 * 68.07340 * 17 15 5 19 19 C 1.53032 * 110.75297 * 187.50347 * 18 17 15 20 20 C 1.51380 * 108.61661 * 274.28790 * 19 18 17 21 21 C 1.29523 * 120.36024 * 71.92484 * 20 19 18 22 22 C 1.51374 * 120.35854 * 359.97438 * 21 20 19 23 23 C 1.51852 * 108.64624 * 192.12628 * 17 15 5 24 24 H 1.08991 * 109.46902 * 299.99404 * 1 2 3 25 25 H 1.08995 * 109.47363 * 60.00043 * 1 2 3 26 26 H 1.09007 * 109.46648 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.46728 * 240.00730 * 2 1 3 28 28 H 1.09003 * 109.47205 * 65.87152 * 3 2 1 29 29 H 1.08996 * 109.47711 * 185.87442 * 3 2 1 30 30 H 1.09003 * 109.47714 * 305.87463 * 3 2 1 31 31 H 1.09003 * 109.46846 * 54.63658 * 4 2 1 32 32 H 1.08997 * 109.46598 * 294.63859 * 4 2 1 33 33 H 1.09009 * 109.47423 * 23.21802 * 6 5 4 34 34 H 1.09001 * 109.47450 * 143.21172 * 6 5 4 35 35 H 0.97006 * 119.99816 * 180.02562 * 10 9 7 36 36 H 1.09000 * 108.60179 * 310.13964 * 17 15 5 37 37 H 1.08999 * 109.19833 * 67.19207 * 18 17 15 38 38 H 1.08993 * 109.24116 * 307.84844 * 18 17 15 39 39 H 1.09000 * 109.60939 * 154.55592 * 19 18 17 40 40 H 1.08995 * 109.61484 * 34.02883 * 19 18 17 41 41 H 1.08001 * 119.81802 * 251.89643 * 20 19 18 42 42 H 1.07993 * 119.82052 * 179.97438 * 21 20 19 43 43 H 1.08996 * 109.61422 * 47.83609 * 22 21 20 44 44 H 1.09001 * 109.61409 * 168.18760 * 22 21 20 45 45 H 1.08995 * 109.22151 * 52.20961 * 23 17 15 46 46 H 1.09000 * 109.21705 * 292.86207 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.4994 -0.8341 1.1862 6 6 4.1172 -1.9719 0.5009 7 6 4.4770 -3.0315 1.5103 8 1 4.2661 -2.8732 2.5576 9 6 5.0745 -4.2032 1.0967 10 7 5.3889 -5.1276 1.9777 11 14 5.4386 -4.4771 -0.7149 12 1 6.7963 -3.9648 -1.0299 13 1 5.3747 -5.9293 -1.0185 14 1 4.4341 -3.7550 -1.5363 15 6 4.2735 0.1089 1.7589 16 8 3.7643 1.0071 2.3952 17 6 5.7718 0.0472 1.6086 18 6 6.1234 0.3202 0.1566 19 6 7.6153 0.0879 -0.0929 20 6 8.3663 1.3560 0.2532 21 6 8.5065 1.7171 1.4891 22 6 7.9207 0.8762 2.6031 23 6 6.3983 1.0297 2.5824 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0278 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.7650 1.9251 0.9379 29 1 3.1249 1.4444 -0.1052 30 1 1.5934 1.9859 -0.8327 31 1 1.6005 -1.7175 1.2984 32 1 1.7573 -0.1550 2.1365 33 1 3.4154 -2.3842 -0.2242 34 1 5.0186 -1.6400 -0.0144 35 1 5.8096 -5.9518 1.6868 36 1 6.1058 -0.9583 1.8646 37 1 5.8761 1.3542 -0.0838 38 1 5.5446 -0.3448 -0.4843 39 1 7.7768 -0.1579 -1.1424 40 1 7.9685 -0.7295 0.5356 41 1 8.7878 1.9625 -0.5347 42 1 9.0443 2.6232 1.7261 43 1 8.1850 -0.1700 2.4495 44 1 8.3121 1.2154 3.5622 45 1 6.0053 0.8442 3.5819 46 1 6.1441 2.0457 2.2803 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718029761.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:43 Heat of formation + Delta-G solvation = -56.467028 kcal Electronic energy + Delta-G solvation = -23693.566959 eV Core-core repulsion = 20582.021639 eV Total energy + Delta-G solvation = -3111.545320 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.47788 -38.97423 -37.40683 -35.85472 -34.30078 -33.36970 -32.70697 -29.96701 -28.08983 -27.78797 -26.05307 -24.89893 -24.43977 -22.08825 -20.99319 -19.83602 -19.05079 -18.83872 -18.02183 -17.48678 -16.80451 -16.32143 -16.09587 -15.58458 -15.29166 -14.96961 -14.71442 -14.50277 -14.22134 -14.01494 -13.81246 -13.68105 -13.45195 -13.20538 -13.00855 -12.79458 -12.70691 -12.57684 -12.44832 -12.24184 -12.05926 -11.90022 -11.83746 -11.68803 -11.62507 -11.54860 -11.46253 -11.13036 -10.76276 -10.53665 -9.83089 -9.34230 -8.29377 -6.36149 1.39783 1.41152 1.47903 1.50549 1.81227 2.32998 2.34939 3.04320 3.61633 3.71427 3.89387 3.94582 4.04074 4.15416 4.20456 4.27183 4.29108 4.49746 4.55643 4.62189 4.64696 4.65683 4.73351 4.73939 4.80353 4.83075 4.90858 4.92518 4.98054 5.01185 5.06474 5.14646 5.19314 5.22759 5.25707 5.31672 5.41138 5.44791 5.46719 5.50002 5.77598 5.84329 6.11863 6.21484 6.62832 6.72008 7.25936 7.40691 8.87124 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.010323 B = 0.009131 C = 0.005839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2711.853699 B = 3065.723554 C = 4794.021205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.106 4.106 3 C -0.128 4.128 4 C 0.116 3.884 5 N -0.595 5.595 6 C 0.209 3.791 7 C -0.538 4.538 8 H 0.024 0.976 9 C 0.020 3.980 10 N -0.943 5.943 11 Si 0.935 3.065 12 H -0.255 1.255 13 H -0.287 1.287 14 H -0.238 1.238 15 C 0.518 3.482 16 O -0.589 6.589 17 C -0.102 4.102 18 C -0.101 4.101 19 C -0.093 4.093 20 C -0.157 4.157 21 C -0.159 4.159 22 C -0.092 4.092 23 C -0.082 4.082 24 H 0.054 0.946 25 H 0.073 0.927 26 H 0.059 0.941 27 H 0.071 0.929 28 H 0.042 0.958 29 H 0.032 0.968 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.042 0.958 34 H 0.059 0.941 35 H 0.268 0.732 36 H 0.083 0.917 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.085 0.915 40 H 0.062 0.938 41 H 0.128 0.872 42 H 0.126 0.874 43 H 0.063 0.937 44 H 0.080 0.920 45 H 0.046 0.954 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.086 12.107 -8.490 14.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.125 4.125 3 C -0.186 4.186 4 C -0.007 4.007 5 N -0.324 5.324 6 C 0.087 3.913 7 C -0.577 4.577 8 H 0.042 0.958 9 C -0.178 4.178 10 N -0.582 5.582 11 Si 0.757 3.243 12 H -0.179 1.179 13 H -0.213 1.213 14 H -0.161 1.161 15 C 0.308 3.692 16 O -0.471 6.471 17 C -0.123 4.123 18 C -0.138 4.138 19 C -0.130 4.130 20 C -0.175 4.175 21 C -0.177 4.177 22 C -0.129 4.129 23 C -0.120 4.120 24 H 0.073 0.927 25 H 0.092 0.908 26 H 0.078 0.922 27 H 0.089 0.911 28 H 0.062 0.938 29 H 0.051 0.949 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.060 0.940 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.101 0.899 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.103 0.897 40 H 0.081 0.919 41 H 0.146 0.854 42 H 0.144 0.856 43 H 0.081 0.919 44 H 0.099 0.901 45 H 0.065 0.935 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.866 12.377 -8.142 14.840 hybrid contribution 0.093 -0.954 0.127 0.967 sum 0.959 11.423 -8.016 13.988 Atomic orbital electron populations 1.21718 0.92842 1.02328 1.02526 1.21467 0.97260 0.96387 0.97395 1.21675 0.99849 0.95712 1.01347 1.21561 0.79942 1.00465 0.98750 1.47929 1.06419 1.23380 1.54649 1.19886 0.95031 0.83801 0.92544 1.21500 1.40408 1.01778 0.94005 0.95811 1.25775 0.94454 0.95004 1.02601 1.70062 1.42910 1.08592 1.36684 0.85901 0.80778 0.78016 0.79645 1.17890 1.21287 1.16067 1.20959 0.90348 0.80571 0.77338 1.90549 1.76378 1.37225 1.42951 1.20993 0.90775 1.02042 0.98473 1.21353 0.97265 1.02173 0.93046 1.20832 0.93083 0.96629 1.02477 1.22678 0.99549 0.97808 0.97474 1.22657 1.00349 1.00231 0.94457 1.20816 0.93532 0.99786 0.98747 1.20954 0.94974 0.98566 0.97502 0.92669 0.90839 0.92153 0.91091 0.93842 0.94851 0.91270 0.91282 0.91943 0.93952 0.92341 0.92321 0.89911 0.91306 0.90803 0.89665 0.91921 0.85430 0.85637 0.91881 0.90138 0.93496 0.91685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 9.19 71.98 0.66 -2.44 16 2 C -0.11 -3.05 3.12 -10.79 -0.03 -3.08 16 3 C -0.13 -3.74 8.00 71.98 0.58 -3.17 16 4 C 0.12 4.22 4.95 86.38 0.43 4.65 16 5 N -0.59 -24.36 2.33 -826.15 -1.93 -26.28 16 6 C 0.21 8.99 3.72 85.63 0.32 9.31 16 7 C -0.54 -28.89 9.08 25.60 0.23 -28.66 16 8 H 0.02 1.49 8.06 -2.91 -0.02 1.46 16 9 C 0.02 1.11 5.47 84.66 0.46 1.57 16 10 N -0.94 -56.10 13.96 21.45 0.30 -55.80 16 11 Si 0.93 39.33 27.47 68.60 1.88 41.21 16 12 H -0.25 -10.04 7.11 99.48 0.71 -9.33 16 13 H -0.29 -12.23 7.11 99.48 0.71 -11.53 16 14 H -0.24 -8.94 6.54 99.48 0.65 -8.29 16 15 C 0.52 21.52 5.38 87.66 0.47 21.99 16 16 O -0.59 -26.46 14.38 -3.03 -0.04 -26.50 16 17 C -0.10 -3.73 1.33 -12.29 -0.02 -3.75 16 18 C -0.10 -3.09 4.51 30.23 0.14 -2.95 16 19 C -0.09 -2.46 5.62 30.08 0.17 -2.29 16 20 C -0.16 -3.57 9.34 27.37 0.26 -3.32 16 21 C -0.16 -3.69 9.34 27.37 0.26 -3.44 16 22 C -0.09 -2.51 5.62 30.07 0.17 -2.34 16 23 C -0.08 -2.73 4.24 30.23 0.13 -2.60 16 24 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 27 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 28 H 0.04 1.38 7.95 -2.39 -0.02 1.36 16 29 H 0.03 1.07 6.86 -2.39 -0.02 1.05 16 30 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.07 2.54 8.09 -2.39 -0.02 2.52 16 32 H 0.06 2.43 7.28 -2.39 -0.02 2.41 16 33 H 0.04 1.75 7.08 -2.38 -0.02 1.74 16 34 H 0.06 2.35 3.73 -2.39 -0.01 2.34 16 35 H 0.27 14.88 8.31 -92.70 -0.77 14.11 16 36 H 0.08 3.52 6.70 -2.39 -0.02 3.50 16 37 H 0.07 2.00 7.86 -2.39 -0.02 1.98 16 38 H 0.07 2.33 5.22 -2.39 -0.01 2.31 16 39 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.06 1.86 6.68 -2.39 -0.02 1.85 16 41 H 0.13 2.30 8.06 -2.91 -0.02 2.27 16 42 H 0.13 2.36 8.06 -2.91 -0.02 2.33 16 43 H 0.06 1.88 6.68 -2.39 -0.02 1.87 16 44 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.05 1.71 7.98 -2.39 -0.02 1.69 16 46 H 0.06 2.14 7.83 -2.39 -0.02 2.12 16 Total: -1.00 -64.07 347.22 5.30 -58.77 By element: Atomic # 1 Polarization: 28.25 SS G_CDS: 0.87 Total: 29.12 kcal Atomic # 6 Polarization: -24.73 SS G_CDS: 4.21 Total: -20.52 kcal Atomic # 7 Polarization: -80.45 SS G_CDS: -1.63 Total: -82.08 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -0.04 Total: -26.50 kcal Atomic # 14 Polarization: 39.33 SS G_CDS: 1.88 Total: 41.21 kcal Total: -64.07 5.30 -58.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718029761.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.300 kcal (2) G-P(sol) polarization free energy of solvation -64.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds