Wall clock time and date at job start Tue Mar 31 2020 01:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46701 * 2 1 4 4 C 1.53001 * 109.47025 * 119.99735 * 2 1 3 5 5 C 1.53000 * 109.47231 * 65.00349 * 4 2 1 6 6 N 1.46493 * 109.47156 * 179.97438 * 5 4 2 7 7 C 1.46506 * 119.99811 * 90.00429 * 6 5 4 8 8 C 1.50703 * 109.47289 * 89.99713 * 7 6 5 9 9 H 1.07994 * 119.99399 * 0.02562 * 8 7 6 10 10 C 1.37874 * 119.99789 * 179.97438 * 8 7 6 11 11 N 1.31518 * 120.00144 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99733 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.46632 * 90.00476 * 12 10 8 14 14 H 1.48496 * 109.46690 * 210.00029 * 12 10 8 15 15 H 1.48498 * 109.47171 * 330.00226 * 12 10 8 16 16 C 1.34778 * 120.00131 * 269.99999 * 6 5 4 17 17 O 1.21613 * 120.00035 * 0.02562 * 16 6 5 18 18 C 1.47103 * 119.99672 * 180.02562 * 16 6 5 19 19 C 1.32993 * 119.99756 * 179.97438 * 18 16 6 20 20 C 1.51449 * 126.33952 * 359.69543 * 19 18 16 21 21 C 1.54273 * 106.85063 * 180.23844 * 20 19 18 22 22 C 1.54980 * 103.66504 * 23.47969 * 21 20 19 23 23 C 1.51843 * 126.34281 * 179.97438 * 19 18 16 24 24 H 1.09003 * 109.46795 * 60.00380 * 1 2 3 25 25 H 1.09006 * 109.46698 * 179.97438 * 1 2 3 26 26 H 1.08988 * 109.47634 * 299.99981 * 1 2 3 27 27 H 1.08998 * 109.47298 * 240.00441 * 2 1 3 28 28 H 1.09006 * 109.47254 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47152 * 299.99859 * 3 2 1 30 30 H 1.09003 * 109.47313 * 60.00040 * 3 2 1 31 31 H 1.09001 * 109.46881 * 305.00340 * 4 2 1 32 32 H 1.08997 * 109.46990 * 185.00529 * 4 2 1 33 33 H 1.09006 * 109.46591 * 59.99524 * 5 4 2 34 34 H 1.09005 * 109.46719 * 300.00285 * 5 4 2 35 35 H 1.09001 * 109.47060 * 210.00163 * 7 6 5 36 36 H 1.09004 * 109.47073 * 329.99652 * 7 6 5 37 37 H 0.96997 * 119.99752 * 179.97438 * 11 10 8 38 38 H 1.08002 * 120.00206 * 0.02562 * 18 16 6 39 39 H 1.09005 * 109.98575 * 299.72356 * 20 19 18 40 40 H 1.08997 * 109.98631 * 61.02446 * 20 19 18 41 41 H 1.08997 * 110.79699 * 264.85175 * 21 20 19 42 42 H 1.09000 * 110.43034 * 141.93034 * 21 20 19 43 43 H 1.08997 * 110.83764 * 204.49060 * 22 21 20 44 44 H 1.09007 * 110.83113 * 80.90844 * 22 21 20 45 45 H 1.09002 * 110.44115 * 274.93135 * 23 19 18 46 46 H 1.08996 * 110.44078 * 37.32690 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6353 -2.1954 1.1881 6 7 2.1241 -2.8861 2.3839 7 6 1.2846 -2.9589 3.5824 8 6 0.4305 -4.1991 3.5228 9 1 0.5059 -4.8665 2.6771 10 6 -0.4463 -4.4821 4.5485 11 7 -0.5377 -3.6696 5.5786 12 14 -1.5055 -6.0191 4.4744 13 1 -0.7834 -7.1490 5.1125 14 1 -2.7809 -5.7764 5.1952 15 1 -1.7940 -6.3535 3.0566 16 6 3.3461 -3.4546 2.3816 17 8 4.0432 -3.3938 1.3870 18 6 3.8367 -4.1486 3.5823 19 6 5.0423 -4.7100 3.5799 20 6 6.0220 -4.7271 2.4251 21 6 7.2678 -5.4989 2.9070 22 6 6.7264 -6.3877 4.0554 23 6 5.6891 -5.4575 4.7325 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8934 -0.5137 -0.8900 28 1 3.1300 1.4426 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6765 1.9564 0.8900 31 1 1.6053 -0.2616 2.1370 32 1 3.1263 -0.6442 1.2952 33 1 2.0700 -2.6549 0.3003 34 1 0.5489 -2.2723 1.1421 35 1 1.9185 -2.9964 4.4683 36 1 0.6438 -2.0784 3.6311 37 1 -1.1548 -3.8686 6.3000 38 1 3.2175 -4.2029 4.4656 39 1 5.5776 -5.2315 1.5670 40 1 6.2987 -3.7077 2.1562 41 1 8.0280 -4.8125 3.2799 42 1 7.6686 -6.1151 2.1022 43 1 7.5234 -6.6506 4.7509 44 1 6.2452 -7.2821 3.6594 45 1 6.1859 -4.7605 5.4074 46 1 4.9447 -6.0431 5.2719 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728871119.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:56 Heat of formation + Delta-G solvation = -70.618179 kcal Electronic energy + Delta-G solvation = -22395.672487 eV Core-core repulsion = 19283.513527 eV Total energy + Delta-G solvation = -3112.158960 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.91455 -38.90290 -37.70049 -36.34559 -34.48794 -32.78600 -30.63614 -29.68770 -28.83934 -28.00184 -26.50974 -24.99308 -24.10389 -21.68600 -20.94209 -20.68700 -18.98498 -18.47379 -17.96505 -17.08730 -16.59769 -16.39415 -15.98758 -15.76473 -15.48618 -14.83297 -14.64151 -14.34988 -14.26175 -14.05187 -13.72765 -13.48280 -13.36631 -13.13628 -12.94650 -12.85722 -12.70107 -12.58551 -12.32920 -12.21319 -12.03864 -11.97395 -11.90771 -11.78687 -11.62394 -11.56236 -11.45286 -11.41001 -10.70566 -10.44543 -10.06585 -9.34918 -8.21362 -6.36586 0.51121 1.39299 1.40655 1.50770 2.28821 2.45734 2.47967 3.07857 3.49504 3.78634 3.88666 3.94945 4.04703 4.08272 4.18700 4.29150 4.38647 4.51975 4.55495 4.60350 4.66856 4.73056 4.75904 4.82014 4.90012 4.91951 4.93646 5.02244 5.03079 5.10739 5.13067 5.13199 5.15609 5.21144 5.22536 5.30624 5.44016 5.46129 5.49981 5.55538 5.61541 5.68988 5.91779 6.05246 6.57507 6.81894 7.31274 7.43886 8.83924 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.008761 B = 0.006975 C = 0.004159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3195.347219 B = 4013.543543 C = 6730.653798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.090 4.090 3 C -0.141 4.141 4 C -0.115 4.115 5 C 0.120 3.880 6 N -0.599 5.599 7 C 0.256 3.744 8 C -0.545 4.545 9 H 0.047 0.953 10 C 0.022 3.978 11 N -0.920 5.920 12 Si 0.956 3.044 13 H -0.272 1.272 14 H -0.277 1.277 15 H -0.273 1.273 16 C 0.541 3.459 17 O -0.592 6.592 18 C -0.228 4.228 19 C -0.043 4.043 20 C -0.088 4.088 21 C -0.120 4.120 22 C -0.116 4.116 23 C -0.100 4.100 24 H 0.071 0.929 25 H 0.048 0.952 26 H 0.051 0.949 27 H 0.071 0.929 28 H 0.051 0.949 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.048 0.952 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.027 0.973 36 H 0.019 0.981 37 H 0.269 0.731 38 H 0.124 0.876 39 H 0.062 0.938 40 H 0.066 0.934 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.097 0.903 44 H 0.067 0.933 45 H 0.100 0.900 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.847 1.642 -4.788 11.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.109 4.109 3 C -0.198 4.198 4 C -0.153 4.153 5 C -0.003 4.003 6 N -0.327 5.327 7 C 0.135 3.865 8 C -0.584 4.584 9 H 0.066 0.934 10 C -0.178 4.178 11 N -0.559 5.559 12 Si 0.781 3.219 13 H -0.198 1.198 14 H -0.203 1.203 15 H -0.198 1.198 16 C 0.334 3.666 17 O -0.477 6.477 18 C -0.248 4.248 19 C -0.045 4.045 20 C -0.125 4.125 21 C -0.157 4.157 22 C -0.153 4.153 23 C -0.137 4.137 24 H 0.090 0.910 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.089 0.911 28 H 0.070 0.930 29 H 0.090 0.910 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.045 0.955 36 H 0.037 0.963 37 H 0.078 0.922 38 H 0.141 0.859 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.100 0.900 42 H 0.098 0.902 43 H 0.116 0.884 44 H 0.086 0.914 45 H 0.118 0.882 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 10.056 1.726 -5.121 11.416 hybrid contribution -1.179 -0.601 0.284 1.354 sum 8.877 1.125 -4.837 10.172 Atomic orbital electron populations 1.21882 0.94651 1.01708 1.02207 1.21036 0.96339 0.96744 0.96754 1.21788 1.00771 0.94880 1.02345 1.21872 1.00079 0.94442 0.98940 1.21440 0.99175 0.92386 0.87312 1.48124 1.15921 1.53054 1.15635 1.19048 0.89124 0.96104 0.82208 1.21651 1.22628 1.08405 1.05717 0.93423 1.25643 0.97856 0.99621 0.94671 1.70013 1.37986 1.38313 1.09562 0.85580 0.78342 0.79704 0.78231 1.19798 1.20255 1.19773 1.18742 0.81208 0.78453 0.88222 1.90614 1.57512 1.63312 1.36231 1.22101 0.97922 1.05976 0.98850 1.23253 0.92505 0.90789 0.97931 1.21236 0.94564 1.00977 0.95730 1.22455 0.96078 0.98483 0.98701 1.22526 0.98011 0.97207 0.97562 1.21684 0.98555 0.98223 0.95252 0.90989 0.93341 0.93017 0.91084 0.92970 0.91034 0.92798 0.92760 0.93345 0.91801 0.90767 0.95482 0.96278 0.92235 0.85863 0.91934 0.91537 0.90031 0.90171 0.88415 0.91407 0.88155 0.90581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.72 8.95 71.98 0.64 -3.07 16 2 C -0.09 -2.39 2.92 -10.79 -0.03 -2.42 16 3 C -0.14 -3.14 9.19 71.98 0.66 -2.47 16 4 C -0.11 -3.90 5.01 30.59 0.15 -3.74 16 5 C 0.12 4.76 5.16 86.38 0.45 5.21 16 6 N -0.60 -27.43 2.46 -830.41 -2.04 -29.47 16 7 C 0.26 13.00 4.88 85.63 0.42 13.41 16 8 C -0.55 -29.71 9.39 25.60 0.24 -29.47 16 9 H 0.05 2.67 7.81 -2.91 -0.02 2.64 16 10 C 0.02 1.21 5.46 84.65 0.46 1.67 16 11 N -0.92 -51.61 13.29 21.45 0.28 -51.32 16 12 Si 0.96 42.74 29.54 68.60 2.03 44.77 16 13 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 14 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 15 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 16 C 0.54 24.74 7.62 86.57 0.66 25.40 16 17 O -0.59 -27.77 13.68 -4.07 -0.06 -27.82 16 18 C -0.23 -9.50 9.13 23.43 0.21 -9.28 16 19 C -0.04 -1.46 6.15 -17.01 -0.10 -1.56 16 20 C -0.09 -2.74 4.81 30.52 0.15 -2.60 16 21 C -0.12 -2.57 6.87 31.70 0.22 -2.35 16 22 C -0.12 -2.32 6.95 31.93 0.22 -2.10 16 23 C -0.10 -2.55 6.64 30.87 0.21 -2.34 16 24 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.05 1.33 6.57 -2.38 -0.02 1.31 16 26 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 29 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.06 2.58 7.42 -2.38 -0.02 2.56 16 34 H 0.07 2.96 6.50 -2.38 -0.02 2.94 16 35 H 0.03 1.44 6.10 -2.39 -0.01 1.42 16 36 H 0.02 1.02 8.07 -2.38 -0.02 1.00 16 37 H 0.27 14.20 8.31 -92.71 -0.77 13.43 16 38 H 0.12 5.48 6.23 -2.91 -0.02 5.47 16 39 H 0.06 2.19 7.67 -2.38 -0.02 2.17 16 40 H 0.07 2.24 7.68 -2.39 -0.02 2.23 16 41 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 45 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 46 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -62.13 365.75 5.69 -56.45 By element: Atomic # 1 Polarization: 22.21 SS G_CDS: 0.92 Total: 23.13 kcal Atomic # 6 Polarization: -20.29 SS G_CDS: 4.55 Total: -15.73 kcal Atomic # 7 Polarization: -79.04 SS G_CDS: -1.75 Total: -80.79 kcal Atomic # 8 Polarization: -27.77 SS G_CDS: -0.06 Total: -27.82 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -62.13 5.69 -56.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728871119.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.171 kcal (2) G-P(sol) polarization free energy of solvation -62.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds