Wall clock time and date at job start Tue Mar 31 2020 01:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47047 * 2 1 4 4 C 1.52997 * 109.47047 * 239.99982 * 2 1 3 5 5 C 1.53000 * 109.47190 * 120.00129 * 2 1 3 6 6 N 1.46493 * 109.47156 * 59.99753 * 5 2 1 7 7 C 1.46506 * 119.99811 * 90.00429 * 6 5 2 8 8 C 1.50703 * 109.47289 * 89.99713 * 7 6 5 9 9 H 1.07994 * 119.99399 * 0.02562 * 8 7 6 10 10 C 1.37874 * 119.99789 * 179.97438 * 8 7 6 11 11 N 1.31512 * 119.99734 * 179.97438 * 10 8 7 12 12 Si 1.86799 * 120.00111 * 0.02562 * 10 8 7 13 13 H 1.48498 * 109.47123 * 89.99915 * 12 10 8 14 14 H 1.48498 * 109.47161 * 209.99603 * 12 10 8 15 15 H 1.48497 * 109.47329 * 329.99749 * 12 10 8 16 16 C 1.34778 * 120.00131 * 269.99999 * 6 5 2 17 17 O 1.21611 * 119.99841 * 180.02562 * 16 6 5 18 18 C 1.47096 * 119.99848 * 0.02562 * 16 6 5 19 19 C 1.32997 * 119.99690 * 179.97438 * 18 16 6 20 20 C 1.51451 * 126.34175 * 359.69583 * 19 18 16 21 21 C 1.54274 * 106.84806 * 180.23913 * 20 19 18 22 22 C 1.54983 * 103.66386 * 23.47968 * 21 20 19 23 23 C 1.51847 * 126.33736 * 179.97438 * 19 18 16 24 24 H 1.08996 * 109.47314 * 300.00175 * 1 2 3 25 25 H 1.08999 * 109.47577 * 59.99848 * 1 2 3 26 26 H 1.08998 * 109.47216 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47242 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.47319 * 299.99607 * 3 2 1 29 29 H 1.08997 * 109.47602 * 60.00122 * 3 2 1 30 30 H 1.09003 * 109.47432 * 299.99783 * 4 2 1 31 31 H 1.09005 * 109.47368 * 60.00363 * 4 2 1 32 32 H 1.09005 * 109.47063 * 179.97438 * 4 2 1 33 33 H 1.09006 * 109.46591 * 299.99508 * 5 2 1 34 34 H 1.09005 * 109.46719 * 180.02562 * 5 2 1 35 35 H 1.09001 * 109.47060 * 210.00163 * 7 6 5 36 36 H 1.09004 * 109.47073 * 329.99652 * 7 6 5 37 37 H 0.97007 * 120.00011 * 180.02562 * 11 10 8 38 38 H 1.07999 * 120.00478 * 359.97438 * 18 16 6 39 39 H 1.08996 * 109.97762 * 299.72115 * 20 19 18 40 40 H 1.08996 * 109.98187 * 61.02669 * 20 19 18 41 41 H 1.09002 * 110.79386 * 264.85541 * 21 20 19 42 42 H 1.09005 * 110.42957 * 141.93259 * 21 20 19 43 43 H 1.08997 * 110.83263 * 204.49075 * 22 21 20 44 44 H 1.08996 * 110.83538 * 80.91285 * 22 21 20 45 45 H 1.08996 * 110.44142 * 274.92861 * 23 19 18 46 46 H 1.08999 * 110.44386 * 37.33711 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 2.0400 -0.7213 1.2492 6 7 1.5516 -2.1024 1.2492 7 6 2.3435 -3.1593 0.6149 8 6 3.2847 -3.7585 1.6278 9 1 3.2921 -3.3892 2.6427 10 6 4.1357 -4.7787 1.2592 11 7 4.9575 -5.3012 2.1430 12 14 4.1224 -5.4178 -0.4961 13 1 5.0950 -4.6464 -1.3111 14 1 4.5000 -6.8539 -0.5029 15 1 2.7617 -5.2610 -1.0697 16 6 0.3740 -2.4008 1.8329 17 8 -0.0311 -3.5475 1.8333 18 6 -0.4212 -1.3395 2.4693 19 6 -1.5835 -1.6340 3.0448 20 6 -2.2249 -3.0037 3.1228 21 6 -3.5591 -2.8304 3.8777 22 6 -3.9074 -1.3350 3.6670 23 6 -2.5160 -0.6579 3.7402 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 3.1299 1.4426 -0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6767 -1.7489 -1.2492 31 1 1.6767 -0.2074 -2.1393 32 1 3.1300 -0.7208 -1.2495 33 1 1.6767 -0.2073 2.1392 34 1 3.1300 -0.7208 1.2494 35 1 1.6773 -3.9340 0.2350 36 1 2.9178 -2.7376 -0.2100 37 1 5.5565 -6.0188 1.8835 38 1 -0.0612 -0.3213 2.4694 39 1 -2.4094 -3.3862 2.1189 40 1 -1.5762 -3.6882 3.6693 41 1 -3.4348 -3.0489 4.9383 42 1 -4.3285 -3.4679 3.4419 43 1 -4.5571 -0.9723 4.4635 44 1 -4.3646 -1.1773 2.6903 45 1 -2.2148 -0.5175 4.7783 46 1 -2.5274 0.2974 3.2154 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000729448375.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:45:03 Heat of formation + Delta-G solvation = -38.576086 kcal Electronic energy + Delta-G solvation = -23240.012147 eV Core-core repulsion = 20129.242637 eV Total energy + Delta-G solvation = -3110.769510 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -39.71923 -37.93707 -36.79146 -33.89832 -32.33624 -31.58255 -28.71314 -28.52929 -27.18314 -26.98055 -25.74057 -24.87937 -22.26387 -20.77762 -19.49389 -18.93007 -17.22588 -16.92408 -16.54763 -15.61078 -15.44674 -14.97391 -14.50609 -14.17724 -13.78431 -13.51395 -13.36368 -13.20280 -12.93231 -12.44881 -12.34416 -12.25094 -11.93964 -11.90435 -11.53130 -11.46728 -11.33090 -11.15507 -11.09062 -10.95579 -10.88448 -10.78212 -10.61224 -10.56242 -10.44123 -10.14506 -10.01071 -9.45741 -8.81514 -8.75178 -8.54317 -7.54376 -6.04291 -4.01837 1.83638 3.28995 3.37370 3.41843 3.91226 4.04037 4.43362 4.54095 4.71123 4.96866 4.99714 5.02444 5.10273 5.23211 5.29519 5.40178 5.48836 5.58552 5.62962 5.67873 5.69696 5.74777 5.77556 5.83740 5.90526 5.94802 5.99473 6.06825 6.08499 6.13986 6.19580 6.28454 6.36427 6.38208 6.41221 6.54765 6.58374 6.67954 6.76397 6.87574 7.08224 7.47606 7.68231 8.39524 8.53342 8.99635 9.12825 9.56915 11.09381 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.014614 B = 0.006160 C = 0.004768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.454527 B = 4544.570812 C = 5870.663462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.089 4.089 3 C -0.137 4.137 4 C -0.143 4.143 5 C 0.121 3.879 6 N -0.585 5.585 7 C 0.214 3.786 8 C -0.525 4.525 9 H 0.073 0.927 10 C 0.072 3.928 11 N -0.899 5.899 12 Si 0.872 3.128 13 H -0.275 1.275 14 H -0.284 1.284 15 H -0.264 1.264 16 C 0.542 3.458 17 O -0.543 6.543 18 C -0.207 4.207 19 C -0.054 4.054 20 C -0.090 4.090 21 C -0.129 4.129 22 C -0.123 4.123 23 C -0.097 4.097 24 H 0.055 0.945 25 H 0.048 0.952 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.046 0.954 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.038 0.962 36 H 0.030 0.970 37 H 0.263 0.737 38 H 0.128 0.872 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.068 0.932 45 H 0.082 0.918 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.278 13.953 -1.400 19.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.090 4.090 3 C -0.195 4.195 4 C -0.201 4.201 5 C -0.003 4.003 6 N -0.315 5.315 7 C 0.094 3.906 8 C -0.563 4.563 9 H 0.092 0.908 10 C -0.130 4.130 11 N -0.538 5.538 12 Si 0.699 3.301 13 H -0.201 1.201 14 H -0.210 1.210 15 H -0.188 1.188 16 C 0.332 3.668 17 O -0.423 6.423 18 C -0.227 4.227 19 C -0.056 4.056 20 C -0.127 4.127 21 C -0.167 4.167 22 C -0.160 4.160 23 C -0.134 4.134 24 H 0.074 0.926 25 H 0.067 0.933 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.101 0.899 35 H 0.056 0.944 36 H 0.048 0.952 37 H 0.073 0.927 38 H 0.146 0.854 39 H 0.101 0.899 40 H 0.104 0.896 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.087 0.913 45 H 0.100 0.900 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.317 13.177 -1.394 18.786 hybrid contribution 0.357 -0.312 -0.842 0.966 sum -12.959 12.865 -2.236 18.397 Atomic orbital electron populations 1.22033 0.94772 1.02088 1.00940 1.21016 0.95929 0.95274 0.96766 1.21797 1.01173 0.95108 1.01379 1.21971 1.01086 1.01039 0.95965 1.21554 1.00249 0.82367 0.96126 1.47697 1.19833 1.08242 1.55712 1.19731 0.90968 0.86306 0.93627 1.21372 1.18450 1.18437 0.98052 0.90847 1.24842 0.95062 0.95914 0.97183 1.69902 1.23355 1.26442 1.34123 0.86904 0.78973 0.78685 0.85562 1.20110 1.21011 1.18849 1.18246 0.81283 0.88164 0.79086 1.90731 1.70632 1.21510 1.59385 1.22338 0.96426 0.99632 1.04340 1.22768 0.93372 0.96640 0.92794 1.21238 0.94946 0.94843 1.01656 1.22478 0.97603 0.96091 1.00516 1.22504 0.96098 0.95760 1.01656 1.21536 0.94001 0.97429 1.00484 0.92582 0.93291 0.92233 0.92444 0.92809 0.92799 0.91703 0.93447 0.92459 0.91262 0.89921 0.94397 0.95209 0.92672 0.85446 0.89856 0.89642 0.91591 0.91581 0.91426 0.91348 0.89953 0.90917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 6.88 37.16 0.26 -1.56 16 2 C -0.09 -1.19 0.84 -154.51 -0.13 -1.32 16 3 C -0.14 -1.47 8.47 37.16 0.31 -1.15 16 4 C -0.14 -2.10 7.22 37.16 0.27 -1.83 16 5 C 0.12 1.98 4.51 -4.05 -0.02 1.96 16 6 N -0.59 -12.15 1.98 -176.45 -0.35 -12.50 16 7 C 0.21 5.26 3.13 -5.19 -0.02 5.25 16 8 C -0.52 -15.25 9.94 -34.44 -0.34 -15.59 16 9 H 0.07 2.35 8.06 -52.49 -0.42 1.93 16 10 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 11 N -0.90 -28.09 13.96 55.43 0.77 -27.32 16 12 Si 0.87 21.82 27.47 -169.99 -4.67 17.15 16 13 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 14 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 15 H -0.26 -6.46 6.54 56.52 0.37 -6.09 16 16 C 0.54 11.34 6.22 -12.67 -0.08 11.26 16 17 O -0.54 -13.38 13.68 5.27 0.07 -13.31 16 18 C -0.21 -3.31 6.97 -37.81 -0.26 -3.57 16 19 C -0.05 -0.78 6.15 -100.23 -0.62 -1.40 16 20 C -0.09 -1.36 4.81 -26.85 -0.13 -1.49 16 21 C -0.13 -1.46 6.87 -25.02 -0.17 -1.63 16 22 C -0.12 -1.18 6.94 -24.68 -0.17 -1.35 16 23 C -0.10 -1.03 6.64 -26.31 -0.17 -1.21 16 24 H 0.06 0.64 6.20 -51.93 -0.32 0.32 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.92 6.01 -51.93 -0.31 0.61 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 1.11 5.99 -51.93 -0.31 0.80 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.84 8.08 -51.93 -0.42 0.42 16 33 H 0.07 1.00 6.10 -51.93 -0.32 0.68 16 34 H 0.08 1.42 8.07 -51.93 -0.42 1.00 16 35 H 0.04 1.02 6.48 -51.93 -0.34 0.68 16 36 H 0.03 0.69 5.48 -51.93 -0.28 0.41 16 37 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 38 H 0.13 1.71 4.62 -52.49 -0.24 1.47 16 39 H 0.08 1.38 7.67 -51.93 -0.40 0.99 16 40 H 0.09 1.50 7.68 -51.93 -0.40 1.10 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 347.24 15.07 5.23 5.23 Total: -1.00 -33.06 347.24 -8.31 -41.37 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -8.00 Total: 0.97 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: -1.37 Total: -11.60 kcal Atomic # 7 Polarization: -40.24 SS G_CDS: 0.42 Total: -39.82 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: 0.07 Total: -13.31 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.67 Total: 17.15 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.06 -8.31 -41.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729448375.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.796 kcal (2) G-P(sol) polarization free energy of solvation -33.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds