Wall clock time and date at job start Tue Mar 31 2020 01:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47047 * 2 1 4 4 C 1.52997 * 109.47047 * 239.99982 * 2 1 3 5 5 C 1.53000 * 109.47190 * 120.00129 * 2 1 3 6 6 N 1.46493 * 109.47156 * 59.99753 * 5 2 1 7 7 C 1.46506 * 119.99811 * 90.00429 * 6 5 2 8 8 C 1.50703 * 109.47289 * 89.99713 * 7 6 5 9 9 H 1.07994 * 119.99399 * 0.02562 * 8 7 6 10 10 C 1.37874 * 119.99789 * 179.97438 * 8 7 6 11 11 N 1.31512 * 119.99734 * 179.97438 * 10 8 7 12 12 Si 1.86799 * 120.00111 * 0.02562 * 10 8 7 13 13 H 1.48498 * 109.47123 * 89.99915 * 12 10 8 14 14 H 1.48498 * 109.47161 * 209.99603 * 12 10 8 15 15 H 1.48497 * 109.47329 * 329.99749 * 12 10 8 16 16 C 1.34778 * 120.00131 * 269.99999 * 6 5 2 17 17 O 1.21611 * 119.99841 * 180.02562 * 16 6 5 18 18 C 1.47096 * 119.99848 * 0.02562 * 16 6 5 19 19 C 1.32997 * 119.99690 * 179.97438 * 18 16 6 20 20 C 1.51451 * 126.34175 * 359.69583 * 19 18 16 21 21 C 1.54274 * 106.84806 * 180.23913 * 20 19 18 22 22 C 1.54983 * 103.66386 * 23.47968 * 21 20 19 23 23 C 1.51847 * 126.33736 * 179.97438 * 19 18 16 24 24 H 1.08996 * 109.47314 * 300.00175 * 1 2 3 25 25 H 1.08999 * 109.47577 * 59.99848 * 1 2 3 26 26 H 1.08998 * 109.47216 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47242 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.47319 * 299.99607 * 3 2 1 29 29 H 1.08997 * 109.47602 * 60.00122 * 3 2 1 30 30 H 1.09003 * 109.47432 * 299.99783 * 4 2 1 31 31 H 1.09005 * 109.47368 * 60.00363 * 4 2 1 32 32 H 1.09005 * 109.47063 * 179.97438 * 4 2 1 33 33 H 1.09006 * 109.46591 * 299.99508 * 5 2 1 34 34 H 1.09005 * 109.46719 * 180.02562 * 5 2 1 35 35 H 1.09001 * 109.47060 * 210.00163 * 7 6 5 36 36 H 1.09004 * 109.47073 * 329.99652 * 7 6 5 37 37 H 0.97007 * 120.00011 * 180.02562 * 11 10 8 38 38 H 1.07999 * 120.00478 * 359.97438 * 18 16 6 39 39 H 1.08996 * 109.97762 * 299.72115 * 20 19 18 40 40 H 1.08996 * 109.98187 * 61.02669 * 20 19 18 41 41 H 1.09002 * 110.79386 * 264.85541 * 21 20 19 42 42 H 1.09005 * 110.42957 * 141.93259 * 21 20 19 43 43 H 1.08997 * 110.83263 * 204.49075 * 22 21 20 44 44 H 1.08996 * 110.83538 * 80.91285 * 22 21 20 45 45 H 1.08996 * 110.44142 * 274.92861 * 23 19 18 46 46 H 1.08999 * 110.44386 * 37.33711 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 2.0400 -0.7213 1.2492 6 7 1.5516 -2.1024 1.2492 7 6 2.3435 -3.1593 0.6149 8 6 3.2847 -3.7585 1.6278 9 1 3.2921 -3.3892 2.6427 10 6 4.1357 -4.7787 1.2592 11 7 4.9575 -5.3012 2.1430 12 14 4.1224 -5.4178 -0.4961 13 1 5.0950 -4.6464 -1.3111 14 1 4.5000 -6.8539 -0.5029 15 1 2.7617 -5.2610 -1.0697 16 6 0.3740 -2.4008 1.8329 17 8 -0.0311 -3.5475 1.8333 18 6 -0.4212 -1.3395 2.4693 19 6 -1.5835 -1.6340 3.0448 20 6 -2.2249 -3.0037 3.1228 21 6 -3.5591 -2.8304 3.8777 22 6 -3.9074 -1.3350 3.6670 23 6 -2.5160 -0.6579 3.7402 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 3.1299 1.4426 -0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6767 -1.7489 -1.2492 31 1 1.6767 -0.2074 -2.1393 32 1 3.1300 -0.7208 -1.2495 33 1 1.6767 -0.2073 2.1392 34 1 3.1300 -0.7208 1.2494 35 1 1.6773 -3.9340 0.2350 36 1 2.9178 -2.7376 -0.2100 37 1 5.5565 -6.0188 1.8835 38 1 -0.0612 -0.3213 2.4694 39 1 -2.4094 -3.3862 2.1189 40 1 -1.5762 -3.6882 3.6693 41 1 -3.4348 -3.0489 4.9383 42 1 -4.3285 -3.4679 3.4419 43 1 -4.5571 -0.9723 4.4635 44 1 -4.3646 -1.1773 2.6903 45 1 -2.2148 -0.5175 4.7783 46 1 -2.5274 0.2974 3.2154 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000729448375.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:45:02 Heat of formation + Delta-G solvation = -58.125281 kcal Electronic energy + Delta-G solvation = -23240.859864 eV Core-core repulsion = 20129.242637 eV Total energy + Delta-G solvation = -3111.617227 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.20761 -39.03699 -38.13670 -35.67205 -34.34900 -32.87693 -30.37841 -29.68472 -28.24025 -28.09427 -27.04595 -26.26816 -24.10777 -21.71259 -20.95387 -20.09783 -19.16911 -18.51412 -17.99954 -17.04946 -16.71486 -16.41632 -15.92365 -15.53191 -15.19908 -14.82182 -14.71835 -14.63852 -14.23595 -14.08598 -13.69522 -13.48899 -13.41485 -13.02555 -12.88331 -12.77430 -12.56343 -12.47109 -12.40024 -12.20382 -12.17782 -11.96140 -11.88499 -11.81117 -11.70090 -11.56240 -11.46124 -11.37524 -10.83100 -10.45559 -10.02504 -9.23614 -8.36168 -6.40065 0.53709 1.26902 1.31614 1.42558 2.28103 2.36481 2.51505 2.97843 3.45908 3.77184 3.84854 3.90991 4.01652 4.11621 4.17897 4.33091 4.47567 4.52116 4.53250 4.60689 4.70532 4.75521 4.81387 4.85582 4.90105 4.94248 4.95223 4.98470 5.03882 5.10762 5.12515 5.13418 5.17460 5.22206 5.24991 5.37440 5.42136 5.45385 5.47635 5.53904 5.55318 5.66557 5.75496 6.25363 6.60714 6.80294 7.20818 7.51059 8.81198 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.014614 B = 0.006160 C = 0.004768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.454527 B = 4544.570812 C = 5870.663462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.082 4.082 3 C -0.130 4.130 4 C -0.145 4.145 5 C 0.115 3.885 6 N -0.591 5.591 7 C 0.230 3.770 8 C -0.534 4.534 9 H 0.026 0.974 10 C 0.013 3.987 11 N -0.945 5.945 12 Si 0.943 3.057 13 H -0.249 1.249 14 H -0.279 1.279 15 H -0.260 1.260 16 C 0.530 3.470 17 O -0.598 6.598 18 C -0.221 4.221 19 C -0.042 4.042 20 C -0.098 4.098 21 C -0.124 4.124 22 C -0.115 4.115 23 C -0.091 4.091 24 H 0.075 0.925 25 H 0.067 0.933 26 H 0.026 0.974 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.032 0.968 31 H 0.070 0.930 32 H 0.051 0.949 33 H 0.092 0.908 34 H 0.068 0.932 35 H 0.011 0.989 36 H 0.050 0.950 37 H 0.268 0.732 38 H 0.160 0.840 39 H 0.058 0.942 40 H 0.048 0.952 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.096 0.904 44 H 0.073 0.927 45 H 0.098 0.902 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.076 17.253 -2.291 23.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.083 4.083 3 C -0.188 4.188 4 C -0.203 4.203 5 C -0.008 4.008 6 N -0.320 5.320 7 C 0.107 3.893 8 C -0.573 4.573 9 H 0.044 0.956 10 C -0.185 4.185 11 N -0.586 5.586 12 Si 0.766 3.234 13 H -0.173 1.173 14 H -0.205 1.205 15 H -0.184 1.184 16 C 0.323 3.677 17 O -0.482 6.482 18 C -0.241 4.241 19 C -0.044 4.044 20 C -0.135 4.135 21 C -0.162 4.162 22 C -0.152 4.152 23 C -0.128 4.128 24 H 0.094 0.906 25 H 0.086 0.914 26 H 0.045 0.955 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.051 0.949 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.110 0.890 34 H 0.086 0.914 35 H 0.029 0.971 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.177 0.823 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.114 0.886 44 H 0.092 0.908 45 H 0.116 0.884 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -15.108 16.538 -2.284 22.516 hybrid contribution 0.894 -1.393 -0.458 1.717 sum -14.214 15.145 -2.742 20.950 Atomic orbital electron populations 1.21982 0.93923 1.00532 1.02838 1.20976 0.96523 0.96574 0.94243 1.21751 1.01115 0.92775 1.03146 1.21979 1.00779 0.99667 0.97835 1.21865 0.99549 0.80349 0.99039 1.47747 1.19621 1.09269 1.55329 1.19312 0.89937 0.87016 0.92991 1.21599 1.19647 1.19018 0.96994 0.95584 1.25806 0.94404 0.95974 1.02311 1.70052 1.24433 1.27315 1.36759 0.85778 0.79686 0.78328 0.79637 1.17255 1.20487 1.18421 1.19159 0.81380 0.88766 0.78399 1.90694 1.71945 1.24050 1.61484 1.22210 0.96781 0.99315 1.05836 1.23252 0.93005 0.97356 0.90816 1.21264 0.96891 0.94911 1.00428 1.22463 0.95161 0.98272 1.00283 1.22527 0.96003 0.93582 1.03110 1.21651 0.92949 0.97259 1.00941 0.90619 0.91403 0.95474 0.92604 0.91085 0.90998 0.94903 0.91076 0.92954 0.89007 0.91393 0.97092 0.93270 0.92282 0.82287 0.92308 0.93361 0.90817 0.90817 0.88557 0.90806 0.88353 0.88243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 6.88 71.98 0.50 -2.65 16 2 C -0.08 -2.04 0.84 -52.18 -0.04 -2.09 16 3 C -0.13 -2.31 8.47 71.98 0.61 -1.70 16 4 C -0.15 -4.08 7.22 71.98 0.52 -3.56 16 5 C 0.11 3.69 4.51 86.38 0.39 4.08 16 6 N -0.59 -25.51 1.98 -830.42 -1.65 -27.15 16 7 C 0.23 11.82 3.13 85.63 0.27 12.09 16 8 C -0.53 -32.82 9.94 25.60 0.25 -32.57 16 9 H 0.03 1.79 8.06 -2.91 -0.02 1.76 16 10 C 0.01 0.79 5.47 84.65 0.46 1.25 16 11 N -0.95 -61.40 13.96 21.45 0.30 -61.10 16 12 Si 0.94 46.15 27.47 68.60 1.88 48.03 16 13 H -0.25 -11.06 7.11 99.48 0.71 -10.36 16 14 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 15 H -0.26 -12.47 6.54 99.48 0.65 -11.82 16 16 C 0.53 23.24 6.22 86.57 0.54 23.78 16 17 O -0.60 -31.80 13.68 -4.07 -0.06 -31.85 16 18 C -0.22 -6.96 6.97 23.43 0.16 -6.80 16 19 C -0.04 -1.18 6.15 -17.01 -0.10 -1.29 16 20 C -0.10 -3.07 4.81 30.52 0.15 -2.93 16 21 C -0.12 -2.62 6.87 31.70 0.22 -2.41 16 22 C -0.11 -1.77 6.94 31.93 0.22 -1.55 16 23 C -0.09 -1.57 6.64 30.87 0.21 -1.37 16 24 H 0.08 1.43 6.20 -2.39 -0.01 1.42 16 25 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.03 0.81 6.01 -2.39 -0.01 0.79 16 27 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 29 H 0.07 1.04 8.14 -2.39 -0.02 1.03 16 30 H 0.03 1.11 5.99 -2.39 -0.01 1.10 16 31 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 32 H 0.05 1.48 8.08 -2.38 -0.02 1.46 16 33 H 0.09 2.50 6.10 -2.38 -0.01 2.49 16 34 H 0.07 2.37 8.07 -2.38 -0.02 2.35 16 35 H 0.01 0.62 6.48 -2.39 -0.02 0.61 16 36 H 0.05 2.33 5.48 -2.38 -0.01 2.32 16 37 H 0.27 16.15 8.31 -92.70 -0.77 15.38 16 38 H 0.16 3.85 4.62 -2.91 -0.01 3.83 16 39 H 0.06 2.11 7.67 -2.39 -0.02 2.09 16 40 H 0.05 1.85 7.68 -2.39 -0.02 1.83 16 41 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 43 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 46 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -79.27 347.24 5.71 -73.56 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: 0.88 Total: 16.21 kcal Atomic # 6 Polarization: -22.04 SS G_CDS: 4.35 Total: -17.70 kcal Atomic # 7 Polarization: -86.91 SS G_CDS: -1.35 Total: -88.26 kcal Atomic # 8 Polarization: -31.80 SS G_CDS: -0.06 Total: -31.85 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 1.88 Total: 48.03 kcal Total: -79.27 5.71 -73.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729448375.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.438 kcal (2) G-P(sol) polarization free energy of solvation -79.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds