Wall clock time and date at job start Tue Mar 31 2020 02:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.32996 * 119.99738 * 2 1 4 4 C 1.47101 * 119.99734 * 173.55904 * 3 2 1 5 5 O 1.21614 * 119.99949 * 356.77508 * 4 3 2 6 6 N 1.34781 * 120.00109 * 176.78194 * 4 3 2 7 7 C 1.46497 * 120.00027 * 179.97438 * 6 4 3 8 8 C 1.50697 * 109.47283 * 89.99844 * 7 6 4 9 9 H 1.08001 * 119.99861 * 359.97438 * 8 7 6 10 10 C 1.37875 * 120.00232 * 180.02562 * 8 7 6 11 11 N 1.31507 * 119.99894 * 359.97438 * 10 8 7 12 12 Si 1.86807 * 120.00012 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47219 * 89.99685 * 12 10 8 14 14 H 1.48506 * 109.46518 * 209.99756 * 12 10 8 15 15 H 1.48504 * 109.46876 * 329.99411 * 12 10 8 16 16 C 1.46500 * 119.99511 * 359.97438 * 6 4 3 17 17 C 1.52991 * 109.47388 * 90.00297 * 16 6 4 18 18 C 1.53001 * 117.50074 * 243.74442 * 17 16 6 19 19 C 1.52998 * 117.49984 * 175.08015 * 17 16 6 20 20 C 1.50698 * 119.99778 * 179.97438 * 2 1 3 21 21 C 1.53003 * 109.46627 * 249.01675 * 20 2 1 22 22 C 1.52994 * 109.47233 * 9.01483 * 20 2 1 23 23 C 1.53000 * 109.46812 * 129.01861 * 20 2 1 24 24 H 1.09007 * 109.46930 * 90.00078 * 1 2 3 25 25 H 1.08990 * 109.47337 * 210.00214 * 1 2 3 26 26 H 1.09000 * 109.47272 * 330.00558 * 1 2 3 27 27 H 1.07998 * 120.00102 * 353.27546 * 3 2 1 28 28 H 1.09000 * 109.47028 * 209.99756 * 7 6 4 29 29 H 1.09000 * 109.47009 * 329.99892 * 7 6 4 30 30 H 0.97003 * 119.99979 * 180.02562 * 11 10 8 31 31 H 1.09008 * 109.46361 * 210.00129 * 16 6 4 32 32 H 1.08994 * 109.47280 * 329.99337 * 16 6 4 33 33 H 1.09001 * 115.55100 * 29.41066 * 17 16 6 34 34 H 1.09001 * 117.49588 * 359.97438 * 18 17 16 35 35 H 1.08995 * 117.49904 * 145.01846 * 18 17 16 36 36 H 1.09000 * 117.50294 * 214.97652 * 19 17 16 37 37 H 1.09000 * 117.50174 * 0.02562 * 19 17 16 38 38 H 1.08996 * 109.47494 * 93.57332 * 21 20 2 39 39 H 1.08998 * 109.47122 * 213.57140 * 21 20 2 40 40 H 1.09000 * 109.47425 * 333.56853 * 21 20 2 41 41 H 1.09004 * 109.47193 * 60.00313 * 22 20 2 42 42 H 1.09000 * 109.46602 * 180.02562 * 22 20 2 43 43 H 1.08997 * 109.47330 * 300.00056 * 22 20 2 44 44 H 1.08996 * 109.47202 * 21.96277 * 23 20 2 45 45 H 1.09009 * 109.46522 * 141.95984 * 23 20 2 46 46 H 1.08992 * 109.46967 * 261.95155 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6360 1.1558 0.1429 5 8 4.2326 0.1109 0.3198 6 7 4.3163 2.3175 0.0779 7 6 5.7743 2.3216 0.2208 8 6 6.4124 2.1634 -1.1352 9 1 5.7937 2.0689 -2.0154 10 6 7.7859 2.1384 -1.2521 11 7 8.5392 2.2530 -0.1803 12 14 8.5769 1.9430 -2.9331 13 1 8.7985 3.2825 -3.5346 14 1 9.8789 1.2434 -2.7892 15 1 7.6820 1.1477 -3.8118 16 6 3.5976 3.5762 -0.1356 17 6 3.2072 4.1763 1.2164 18 6 1.7148 4.3096 1.5258 19 6 2.5462 5.5561 1.2125 20 6 2.2605 -1.3051 0.0006 21 6 2.9628 -1.4878 1.3476 22 6 1.2817 -2.4592 -0.2249 23 6 3.3019 -1.2932 -1.1202 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3634 0.8900 0.5137 27 1 1.6375 2.0839 -0.1095 28 1 6.0932 3.2646 0.6647 29 1 6.0786 1.4959 0.8641 30 1 9.5056 2.2357 -0.2625 31 1 4.2402 4.2749 -0.6715 32 1 2.6988 3.3863 -0.7221 33 1 3.8739 3.9400 2.0458 34 1 1.0110 3.9700 0.7658 35 1 1.3997 4.1614 2.5586 36 1 2.7776 6.2275 2.0394 37 1 2.3890 6.0362 0.2466 38 1 2.3238 -2.0659 2.0151 39 1 3.9042 -2.0164 1.1977 40 1 3.1608 -0.5113 1.7896 41 1 0.7813 -2.3290 -1.1845 42 1 1.8267 -3.4031 -0.2240 43 1 0.5398 -2.4676 0.5735 44 1 3.5318 -0.2629 -1.3916 45 1 4.2098 -1.7899 -0.7777 46 1 2.9063 -1.8184 -1.9894 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000742638733.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:38:10 Heat of formation + Delta-G solvation = 7.367836 kcal Electronic energy + Delta-G solvation = -23403.287760 eV Core-core repulsion = 20294.510528 eV Total energy + Delta-G solvation = -3108.777232 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.47723 -39.02357 -37.79756 -35.90903 -34.61907 -33.33154 -30.33806 -29.17451 -28.12616 -27.82241 -26.82645 -24.95494 -23.19992 -22.68767 -21.85230 -20.42702 -18.61926 -18.39914 -17.94420 -16.99430 -16.36222 -16.29692 -16.04352 -15.28210 -15.14551 -14.97724 -14.94217 -14.41285 -14.15687 -13.84781 -13.55835 -13.38422 -13.36582 -13.14054 -12.92709 -12.67587 -12.64506 -12.52802 -12.41399 -12.27704 -12.18603 -11.95934 -11.71816 -11.58090 -11.49479 -11.33782 -11.22248 -10.83727 -10.64298 -10.03964 -9.85105 -9.16788 -8.20806 -6.36309 0.60686 1.33661 1.36509 1.46968 2.31609 2.52937 2.63140 3.00417 3.07082 3.68242 3.79192 3.93521 4.05781 4.06105 4.24447 4.25634 4.32400 4.48467 4.55878 4.68938 4.76960 4.80550 4.83595 4.85584 4.88250 4.92322 4.93454 4.96559 5.07649 5.08090 5.18115 5.23004 5.26566 5.29763 5.31773 5.33500 5.34530 5.56191 5.59779 5.60962 5.66209 5.87543 5.98734 6.09846 6.72692 6.96589 7.30713 7.68135 8.84956 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.012570 B = 0.006885 C = 0.004914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2227.048519 B = 4065.983004 C = 5696.282271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.022 4.022 3 C -0.236 4.236 4 C 0.515 3.485 5 O -0.557 6.557 6 N -0.603 5.603 7 C 0.270 3.730 8 C -0.535 4.535 9 H 0.050 0.950 10 C 0.008 3.992 11 N -0.930 5.930 12 Si 0.965 3.035 13 H -0.263 1.263 14 H -0.281 1.281 15 H -0.273 1.273 16 C 0.146 3.854 17 C -0.192 4.192 18 C -0.160 4.160 19 C -0.163 4.163 20 C -0.034 4.034 21 C -0.099 4.099 22 C -0.134 4.134 23 C -0.105 4.105 24 H 0.091 0.909 25 H 0.090 0.910 26 H 0.082 0.918 27 H 0.147 0.853 28 H 0.011 0.989 29 H -0.004 1.004 30 H 0.266 0.734 31 H 0.066 0.934 32 H 0.094 0.906 33 H 0.075 0.925 34 H 0.111 0.889 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.108 0.892 38 H 0.051 0.949 39 H 0.030 0.970 40 H 0.037 0.963 41 H 0.067 0.933 42 H 0.052 0.948 43 H 0.077 0.923 44 H 0.036 0.964 45 H 0.029 0.971 46 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.564 -0.050 0.588 20.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.024 4.024 3 C -0.256 4.256 4 C 0.308 3.692 5 O -0.439 6.439 6 N -0.333 5.333 7 C 0.148 3.852 8 C -0.574 4.574 9 H 0.068 0.932 10 C -0.191 4.191 11 N -0.570 5.570 12 Si 0.789 3.211 13 H -0.188 1.188 14 H -0.206 1.206 15 H -0.198 1.198 16 C 0.023 3.977 17 C -0.212 4.212 18 C -0.196 4.196 19 C -0.201 4.201 20 C -0.034 4.034 21 C -0.156 4.156 22 C -0.191 4.191 23 C -0.162 4.162 24 H 0.110 0.890 25 H 0.108 0.892 26 H 0.101 0.899 27 H 0.164 0.836 28 H 0.029 0.971 29 H 0.014 0.986 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.112 0.888 33 H 0.094 0.906 34 H 0.130 0.870 35 H 0.116 0.884 36 H 0.117 0.883 37 H 0.126 0.874 38 H 0.070 0.930 39 H 0.049 0.951 40 H 0.056 0.944 41 H 0.086 0.914 42 H 0.071 0.929 43 H 0.095 0.905 44 H 0.055 0.945 45 H 0.049 0.951 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -20.044 -0.559 0.740 20.066 hybrid contribution 1.716 0.107 -0.474 1.784 sum -18.328 -0.452 0.266 18.335 Atomic orbital electron populations 1.21110 0.87955 1.04599 1.04032 1.22892 0.97533 0.93195 0.88777 1.22516 0.91657 1.00127 1.11320 1.19080 0.89498 0.82891 0.77748 1.90866 1.72282 1.30887 1.49848 1.48034 1.07618 1.07058 1.70609 1.18564 0.76133 0.94984 0.95501 1.21679 0.91915 1.50036 0.93788 0.93195 1.25833 0.97724 0.94657 1.00869 1.70059 1.05343 1.51140 1.30414 0.85461 0.77590 0.78750 0.79293 1.18847 1.20595 1.19826 1.21123 0.96720 0.84781 0.95053 1.22643 0.97384 1.02480 0.98659 1.23129 0.91946 1.01313 1.03235 1.23033 1.02974 0.90084 1.03989 1.19617 0.94568 0.93420 0.95753 1.21752 0.98175 1.00220 0.95452 1.22021 0.98192 0.96310 1.02610 1.21986 0.97242 1.00665 0.96272 0.89024 0.89181 0.89878 0.83584 0.97054 0.98584 0.92521 0.91573 0.88764 0.90642 0.87038 0.88376 0.88259 0.87393 0.92988 0.95118 0.94395 0.91375 0.92892 0.90452 0.94482 0.95148 0.94144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.89 9.21 71.24 0.66 -1.23 16 2 C -0.02 -0.58 4.92 -17.61 -0.09 -0.67 16 3 C -0.24 -7.28 8.20 23.43 0.19 -7.09 16 4 C 0.51 22.06 5.72 86.57 0.49 22.56 16 5 O -0.56 -27.52 7.96 -4.08 -0.03 -27.55 16 6 N -0.60 -26.99 2.46 -830.46 -2.04 -29.03 16 7 C 0.27 15.18 5.16 85.63 0.44 15.62 16 8 C -0.54 -31.89 9.39 25.60 0.24 -31.65 16 9 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 10 C 0.01 0.46 5.46 84.66 0.46 0.92 16 11 N -0.93 -57.86 13.29 21.45 0.28 -57.58 16 12 Si 0.96 46.25 29.54 68.60 2.03 48.28 16 13 H -0.26 -11.85 7.11 99.48 0.71 -11.15 16 14 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 15 H -0.27 -12.97 7.11 99.48 0.71 -12.26 16 16 C 0.15 4.99 5.38 86.38 0.47 5.46 16 17 C -0.19 -5.59 6.01 -10.80 -0.06 -5.65 16 18 C -0.16 -3.26 9.80 30.62 0.30 -2.96 16 19 C -0.16 -3.48 10.25 30.62 0.31 -3.16 16 20 C -0.03 -1.00 0.75 -52.93 -0.04 -1.04 16 21 C -0.10 -3.40 7.59 71.98 0.55 -2.85 16 22 C -0.13 -2.84 7.01 71.98 0.50 -2.33 16 23 C -0.10 -3.92 7.58 71.98 0.55 -3.37 16 24 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 25 H 0.09 1.16 6.10 -2.39 -0.01 1.14 16 26 H 0.08 1.07 8.07 -2.39 -0.02 1.05 16 27 H 0.15 3.60 5.12 -2.91 -0.01 3.58 16 28 H 0.01 0.67 8.07 -2.39 -0.02 0.65 16 29 H 0.00 -0.25 7.42 -2.39 -0.02 -0.27 16 30 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 31 H 0.07 2.42 8.07 -2.38 -0.02 2.40 16 32 H 0.09 2.64 5.87 -2.39 -0.01 2.62 16 33 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 34 H 0.11 1.84 7.29 -2.39 -0.02 1.83 16 35 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.05 1.44 7.77 -2.39 -0.02 1.42 16 39 H 0.03 1.19 7.01 -2.39 -0.02 1.17 16 40 H 0.04 1.49 5.65 -2.39 -0.01 1.48 16 41 H 0.07 1.24 8.02 -2.39 -0.02 1.22 16 42 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.08 1.28 6.64 -2.39 -0.02 1.26 16 44 H 0.04 1.60 4.85 -2.39 -0.01 1.58 16 45 H 0.03 1.29 6.73 -2.38 -0.02 1.28 16 46 H 0.04 1.29 7.72 -2.39 -0.02 1.28 16 Total: -1.00 -73.27 352.36 6.16 -67.12 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: 0.94 Total: 16.21 kcal Atomic # 6 Polarization: -22.41 SS G_CDS: 4.97 Total: -17.44 kcal Atomic # 7 Polarization: -84.85 SS G_CDS: -1.75 Total: -86.61 kcal Atomic # 8 Polarization: -27.52 SS G_CDS: -0.03 Total: -27.55 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Total: -73.27 6.16 -67.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000742638733.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.487 kcal (2) G-P(sol) polarization free energy of solvation -73.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds