Wall clock time and date at job start Tue Mar 31 2020 02:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.32993 * 120.00275 * 2 1 4 4 C 1.47103 * 119.99648 * 352.33680 * 3 2 1 5 5 O 1.21615 * 119.99958 * 353.57221 * 4 3 2 6 6 N 1.34774 * 120.00087 * 173.57173 * 4 3 2 7 7 C 1.46503 * 120.00213 * 180.02562 * 6 4 3 8 8 C 1.50695 * 109.47289 * 89.99613 * 7 6 4 9 9 H 1.07994 * 120.00087 * 0.02562 * 8 7 6 10 10 C 1.37876 * 119.99981 * 180.02562 * 8 7 6 11 11 N 1.31520 * 120.00057 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00116 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47202 * 59.99923 * 12 10 8 14 14 H 1.48505 * 109.47133 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.47261 * 299.99723 * 12 10 8 16 16 C 1.46502 * 119.99738 * 359.97438 * 6 4 3 17 17 C 1.53001 * 109.46653 * 90.00477 * 16 6 4 18 18 C 1.53002 * 117.49899 * 243.74479 * 17 16 6 19 19 C 1.53003 * 117.49706 * 175.08687 * 17 16 6 20 20 C 1.50703 * 120.00155 * 179.97438 * 2 1 3 21 21 C 1.53001 * 109.47250 * 179.97438 * 20 2 1 22 22 C 1.52999 * 109.47337 * 300.00381 * 20 2 1 23 23 C 1.53000 * 109.46740 * 60.00334 * 20 2 1 24 24 H 1.09001 * 109.47634 * 83.66126 * 1 2 3 25 25 H 1.09010 * 109.47391 * 203.65983 * 1 2 3 26 26 H 1.08997 * 109.47337 * 323.65965 * 1 2 3 27 27 H 1.07996 * 120.00507 * 172.34233 * 3 2 1 28 28 H 1.09006 * 109.46844 * 210.00011 * 7 6 4 29 29 H 1.08997 * 109.46773 * 329.99448 * 7 6 4 30 30 H 0.96996 * 120.00272 * 179.97438 * 11 10 8 31 31 H 1.09004 * 109.46882 * 209.99973 * 16 6 4 32 32 H 1.08996 * 109.47643 * 330.00385 * 16 6 4 33 33 H 1.08998 * 115.55183 * 29.41761 * 17 16 6 34 34 H 1.09002 * 117.49620 * 359.97438 * 18 17 16 35 35 H 1.08996 * 117.50115 * 145.02407 * 18 17 16 36 36 H 1.09006 * 117.49756 * 214.97673 * 19 17 16 37 37 H 1.08996 * 117.50025 * 359.97438 * 19 17 16 38 38 H 1.08997 * 109.46800 * 60.00463 * 21 20 2 39 39 H 1.08998 * 109.46806 * 180.02562 * 21 20 2 40 40 H 1.08997 * 109.46976 * 300.00486 * 21 20 2 41 41 H 1.09002 * 109.46842 * 59.99576 * 22 20 2 42 42 H 1.08998 * 109.47172 * 179.97438 * 22 20 2 43 43 H 1.08997 * 109.47195 * 299.99832 * 22 20 2 44 44 H 1.08993 * 109.47714 * 59.99875 * 23 20 2 45 45 H 1.08998 * 109.47349 * 180.02562 * 23 20 2 46 46 H 1.09003 * 109.47440 * 299.99789 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1719 1.1517 0.0000 4 6 1.4463 2.4200 -0.1699 5 8 0.2576 2.4107 -0.4267 6 7 2.0987 3.5922 -0.0409 7 6 1.3759 4.8553 -0.2095 8 6 0.8283 5.3023 1.1214 9 1 1.0017 4.7055 2.0046 10 6 0.1059 6.4732 1.2115 11 7 -0.1057 7.1997 0.1358 12 14 -0.5723 7.0277 2.8613 13 1 0.5478 7.2228 3.8166 14 1 -1.3061 8.3074 2.6901 15 1 -1.4982 5.9935 3.3888 16 6 3.5305 3.6033 0.2691 17 6 4.3341 3.5925 -1.0328 18 6 5.2225 2.3768 -1.3046 19 6 5.8552 3.7180 -0.9251 20 6 2.2605 -1.3051 0.0006 21 6 3.7647 -1.0255 -0.0002 22 6 1.8908 -2.1069 1.2501 23 6 1.8909 -2.1079 -1.2484 24 1 -0.3634 0.1135 -1.0214 25 1 -0.3634 -0.9414 0.4124 26 1 -0.3634 0.8278 0.6089 27 1 3.2447 1.1559 0.1246 28 1 2.0561 5.6143 -0.5961 29 1 0.5541 4.7127 -0.9112 30 1 -0.6142 8.0233 0.1990 31 1 3.7721 4.5013 0.8378 32 1 3.7816 2.7214 0.8584 33 1 3.8497 4.0631 -1.8883 34 1 5.2347 1.5849 -0.5557 35 1 5.3228 2.0479 -2.3389 36 1 6.3714 4.2708 -1.7100 37 1 6.2833 3.8087 0.0732 38 1 4.0283 -0.4534 0.8893 39 1 4.3097 -1.9695 -0.0002 40 1 4.0277 -0.4545 -0.8906 41 1 0.8192 -2.3061 1.2501 42 1 2.4355 -3.0511 1.2503 43 1 2.1541 -1.5351 2.1399 44 1 2.1542 -1.5367 -2.1386 45 1 2.4355 -3.0520 -1.2478 46 1 0.8192 -2.3071 -1.2484 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000742638734.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:38:13 Heat of formation + Delta-G solvation = -26.180977 kcal Electronic energy + Delta-G solvation = -22921.410556 eV Core-core repulsion = 19811.178538 eV Total energy + Delta-G solvation = -3110.232018 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.03109 -39.02375 -38.30452 -36.13021 -34.58812 -33.13289 -30.34860 -29.37313 -28.06696 -27.77012 -26.91285 -25.16446 -23.20964 -23.02426 -21.81409 -20.06320 -18.61130 -18.38352 -18.18319 -16.93192 -16.40086 -16.13576 -15.90595 -15.64082 -15.14919 -14.99094 -14.81796 -14.39689 -14.31150 -13.89248 -13.72238 -13.54973 -13.21501 -12.98801 -12.92246 -12.85339 -12.58814 -12.56223 -12.48530 -12.41281 -12.25231 -12.17920 -11.86390 -11.83677 -11.75160 -11.42565 -11.23934 -10.86326 -10.65089 -10.25604 -10.05174 -9.33019 -8.22335 -6.38045 0.54048 1.34610 1.39273 1.46782 2.29372 2.46743 2.52657 2.98435 3.06065 3.57348 3.79881 3.90797 4.04049 4.07925 4.12332 4.15544 4.26179 4.35048 4.47388 4.64903 4.73801 4.79936 4.81720 4.83045 4.84203 4.86206 4.95350 4.98602 5.05942 5.06970 5.08661 5.14796 5.20453 5.22447 5.27597 5.31346 5.33422 5.40922 5.48770 5.57066 5.68770 5.72243 5.90106 6.06681 6.69853 6.86628 7.28198 7.55584 8.84227 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.015387 B = 0.005439 C = 0.004421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.319606 B = 5146.312012 C = 6331.959080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.022 4.022 3 C -0.235 4.235 4 C 0.523 3.477 5 O -0.593 6.593 6 N -0.599 5.599 7 C 0.266 3.734 8 C -0.542 4.542 9 H 0.051 0.949 10 C 0.008 3.992 11 N -0.929 5.929 12 Si 0.968 3.032 13 H -0.260 1.260 14 H -0.276 1.276 15 H -0.278 1.278 16 C 0.145 3.855 17 C -0.194 4.194 18 C -0.162 4.162 19 C -0.160 4.160 20 C -0.035 4.035 21 C -0.148 4.148 22 C -0.139 4.139 23 C -0.136 4.136 24 H 0.060 0.940 25 H 0.078 0.922 26 H 0.050 0.950 27 H 0.156 0.844 28 H 0.017 0.983 29 H -0.006 1.006 30 H 0.267 0.733 31 H 0.070 0.930 32 H 0.094 0.906 33 H 0.077 0.923 34 H 0.111 0.889 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.109 0.891 38 H 0.059 0.941 39 H 0.081 0.919 40 H 0.060 0.940 41 H 0.057 0.943 42 H 0.082 0.918 43 H 0.052 0.948 44 H 0.049 0.951 45 H 0.083 0.917 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.008 -18.732 0.269 22.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.024 4.024 3 C -0.255 4.255 4 C 0.316 3.684 5 O -0.476 6.476 6 N -0.329 5.329 7 C 0.144 3.856 8 C -0.581 4.581 9 H 0.069 0.931 10 C -0.191 4.191 11 N -0.569 5.569 12 Si 0.792 3.208 13 H -0.184 1.184 14 H -0.201 1.201 15 H -0.203 1.203 16 C 0.022 3.978 17 C -0.214 4.214 18 C -0.198 4.198 19 C -0.197 4.197 20 C -0.035 4.035 21 C -0.205 4.205 22 C -0.196 4.196 23 C -0.193 4.193 24 H 0.079 0.921 25 H 0.097 0.903 26 H 0.069 0.931 27 H 0.173 0.827 28 H 0.035 0.965 29 H 0.013 0.987 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.112 0.888 33 H 0.095 0.905 34 H 0.129 0.871 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.127 0.873 38 H 0.078 0.922 39 H 0.099 0.901 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.101 0.899 43 H 0.071 0.929 44 H 0.068 0.932 45 H 0.102 0.898 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 12.336 -18.524 0.074 22.256 hybrid contribution -0.964 1.271 0.362 1.636 sum 11.372 -17.253 0.436 20.668 Atomic orbital electron populations 1.20955 0.92528 1.01650 1.02044 1.22743 0.95807 0.94811 0.89004 1.22712 1.01476 0.90338 1.10958 1.19337 0.86557 0.85510 0.76996 1.90685 1.17555 1.88109 1.51277 1.48052 1.10017 1.06287 1.68498 1.18645 0.90784 0.80486 0.95675 1.21653 1.34666 1.06964 0.94776 0.93088 1.25872 0.95968 0.96372 1.00876 1.70056 1.41066 1.15361 1.30371 0.85463 0.78760 0.77398 0.79155 1.18409 1.20140 1.20349 1.21174 0.78392 1.03007 0.95190 1.22644 0.93737 1.05938 0.99075 1.23164 1.02051 0.91362 1.03253 1.23038 0.92583 1.00222 1.03905 1.19770 0.95443 0.90672 0.97634 1.22035 0.93160 1.02991 1.02284 1.21886 1.02058 1.00078 0.95568 1.21831 1.02014 0.99960 0.95493 0.92117 0.90312 0.93106 0.82681 0.96481 0.98743 0.92398 0.91127 0.88769 0.90489 0.87097 0.88253 0.88103 0.87282 0.92177 0.90054 0.92095 0.92411 0.89936 0.92923 0.93199 0.89812 0.92566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.75 7.78 71.23 0.55 -3.20 16 2 C -0.02 -0.62 4.90 -17.62 -0.09 -0.70 16 3 C -0.23 -7.65 8.08 23.43 0.19 -7.46 16 4 C 0.52 23.84 7.46 86.57 0.65 24.49 16 5 O -0.59 -32.21 12.89 -4.08 -0.05 -32.27 16 6 N -0.60 -27.64 2.46 -830.43 -2.04 -29.67 16 7 C 0.27 15.22 5.16 85.63 0.44 15.66 16 8 C -0.54 -32.66 9.39 25.60 0.24 -32.42 16 9 H 0.05 3.05 7.81 -2.91 -0.02 3.02 16 10 C 0.01 0.47 5.46 84.65 0.46 0.94 16 11 N -0.93 -57.97 13.29 21.45 0.28 -57.68 16 12 Si 0.97 46.21 29.54 68.60 2.03 48.23 16 13 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 14 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 15 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 16 C 0.15 5.01 5.37 86.38 0.46 5.47 16 17 C -0.19 -5.67 6.01 -10.79 -0.06 -5.73 16 18 C -0.16 -3.29 9.71 30.62 0.30 -3.00 16 19 C -0.16 -3.36 10.25 30.62 0.31 -3.04 16 20 C -0.04 -0.66 0.87 -52.93 -0.05 -0.71 16 21 C -0.15 -2.25 7.14 71.98 0.51 -1.74 16 22 C -0.14 -2.23 8.31 71.98 0.60 -1.63 16 23 C -0.14 -2.25 8.31 71.98 0.60 -1.65 16 24 H 0.06 2.12 7.99 -2.39 -0.02 2.10 16 25 H 0.08 1.99 6.65 -2.38 -0.02 1.97 16 26 H 0.05 2.08 6.25 -2.39 -0.01 2.07 16 27 H 0.16 4.03 2.77 -2.91 -0.01 4.02 16 28 H 0.02 1.00 8.07 -2.38 -0.02 0.98 16 29 H -0.01 -0.37 7.42 -2.39 -0.02 -0.38 16 30 H 0.27 15.61 8.31 -92.71 -0.77 14.83 16 31 H 0.07 2.58 8.07 -2.39 -0.02 2.56 16 32 H 0.09 2.67 5.92 -2.39 -0.01 2.66 16 33 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 34 H 0.11 1.85 7.21 -2.39 -0.02 1.83 16 35 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.10 1.94 8.14 -2.38 -0.02 1.92 16 37 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.06 0.92 7.38 -2.39 -0.02 0.90 16 39 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.06 0.97 7.60 -2.39 -0.02 0.95 16 41 H 0.06 0.95 6.81 -2.39 -0.02 0.94 16 42 H 0.08 0.94 8.14 -2.39 -0.02 0.93 16 43 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.06 0.97 7.76 -2.39 -0.02 0.95 16 Total: -1.00 -75.43 362.99 6.28 -69.15 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: 0.94 Total: 16.96 kcal Atomic # 6 Polarization: -19.84 SS G_CDS: 5.12 Total: -14.72 kcal Atomic # 7 Polarization: -85.60 SS G_CDS: -1.75 Total: -87.36 kcal Atomic # 8 Polarization: -32.21 SS G_CDS: -0.05 Total: -32.27 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.23 kcal Total: -75.43 6.28 -69.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000742638734.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.970 kcal (2) G-P(sol) polarization free energy of solvation -75.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds