Wall clock time and date at job start Tue Mar 31 2020 02:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47099 * 2 1 4 4 C 1.53007 * 109.47041 * 120.00028 * 2 1 3 5 5 N 1.46504 * 109.47024 * 174.99748 * 4 2 1 6 6 C 1.46497 * 119.99500 * 90.00175 * 5 4 2 7 7 C 1.50697 * 109.47257 * 90.00043 * 6 5 4 8 8 H 1.07997 * 120.00036 * 359.97438 * 7 6 5 9 9 C 1.37881 * 120.00098 * 179.97438 * 7 6 5 10 10 N 1.31507 * 119.99899 * 179.97438 * 9 7 6 11 11 Si 1.86796 * 120.00021 * 0.02562 * 9 7 6 12 12 H 1.48501 * 109.47270 * 89.99247 * 11 9 7 13 13 H 1.48498 * 109.47400 * 209.99459 * 11 9 7 14 14 H 1.48506 * 109.47088 * 329.99539 * 11 9 7 15 15 C 1.34775 * 120.00167 * 269.99885 * 5 4 2 16 16 O 1.21280 * 119.99874 * 179.97438 * 15 5 4 17 17 C 1.50697 * 119.99884 * 0.02562 * 15 5 4 18 18 H 1.09009 * 115.55781 * 27.13407 * 17 15 5 19 19 C 1.53084 * 117.50993 * 172.84325 * 17 15 5 20 20 C 1.52545 * 117.51303 * 241.34589 * 17 15 5 21 21 C 1.53875 * 120.82955 * 142.33839 * 20 17 15 22 22 C 1.54990 * 104.06199 * 192.35352 * 21 20 17 23 23 C 1.54919 * 102.82193 * 37.56977 * 22 21 20 24 24 C 1.53485 * 121.09096 * 2.96552 * 20 17 15 25 25 H 1.09001 * 109.47105 * 299.99797 * 1 2 3 26 26 H 1.08998 * 109.47304 * 60.00041 * 1 2 3 27 27 H 1.09002 * 109.47025 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46916 * 239.99689 * 2 1 3 29 29 H 1.08991 * 109.47199 * 299.99782 * 3 2 1 30 30 H 1.09001 * 109.46976 * 60.00123 * 3 2 1 31 31 H 1.09002 * 109.46578 * 179.97438 * 3 2 1 32 32 H 1.09004 * 109.47076 * 54.99669 * 4 2 1 33 33 H 1.08996 * 109.47317 * 294.99894 * 4 2 1 34 34 H 1.09004 * 109.46950 * 209.99787 * 6 5 4 35 35 H 1.08996 * 109.47395 * 329.99543 * 6 5 4 36 36 H 0.97009 * 119.99901 * 180.02562 * 10 9 7 37 37 H 1.08999 * 117.51293 * 214.91631 * 19 17 15 38 38 H 1.09000 * 117.50858 * 359.97105 * 19 17 15 39 39 H 1.08995 * 110.51032 * 310.99835 * 21 20 17 40 40 H 1.08993 * 110.51138 * 73.70977 * 21 20 17 41 41 H 1.09000 * 110.74553 * 279.23540 * 22 21 20 42 42 H 1.09001 * 110.74083 * 155.90259 * 22 21 20 43 43 H 1.09001 * 110.48567 * 203.59503 * 23 22 21 44 44 H 1.08998 * 110.59669 * 81.02094 * 23 22 21 45 45 H 1.09009 * 110.06957 * 263.32215 * 24 20 17 46 46 H 1.09001 * 110.06901 * 24.84789 * 24 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5001 -0.8265 1.1906 6 6 4.3343 0.2340 1.7613 7 6 4.6221 -0.0768 3.2075 8 1 4.2231 -0.9742 3.6568 9 6 5.3947 0.7846 3.9573 10 7 5.6454 0.5137 5.2195 11 14 6.0842 2.3372 3.1805 12 1 5.1162 3.4498 3.3546 13 1 7.3684 2.6910 3.8370 14 1 6.3162 2.1051 1.7321 15 6 4.0758 -1.8988 0.6116 16 8 5.2845 -1.9856 0.5626 17 6 3.2175 -2.9893 0.0241 18 1 2.2300 -2.6783 -0.3168 19 6 3.9221 -4.0955 -0.7655 20 6 3.3505 -4.3879 0.6185 21 6 2.1180 -5.2938 0.7864 22 6 2.6190 -6.4471 1.6925 23 6 3.5659 -5.7213 2.6808 24 6 4.2729 -4.6560 1.8156 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6053 -1.7198 1.2952 33 1 1.7517 -0.1584 2.1370 34 1 5.2722 0.2952 1.2093 35 1 3.8091 1.1865 1.6919 36 1 6.1887 1.1199 5.7470 37 1 3.3977 -4.5126 -1.6252 38 1 5.0062 -4.0341 -0.8603 39 1 1.3080 -4.7503 1.2726 40 1 1.7938 -5.6805 -0.1797 41 1 3.1649 -7.1879 1.1083 42 1 1.7872 -6.9096 2.2239 43 1 4.2928 -6.4198 3.0952 44 1 2.9959 -5.2469 3.4796 45 1 5.2350 -5.0336 1.4692 46 1 4.4148 -3.7410 2.3907 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000747369060.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:37 Heat of formation + Delta-G solvation = -53.038880 kcal Electronic energy + Delta-G solvation = -23309.529745 eV Core-core repulsion = 20198.133081 eV Total energy + Delta-G solvation = -3111.396664 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.43733 -39.36983 -37.77168 -35.46315 -34.91156 -34.18108 -30.60924 -29.65879 -27.99706 -27.05051 -26.62573 -25.56308 -23.19110 -21.70396 -21.39869 -20.24875 -19.24432 -19.11293 -17.93856 -17.28229 -16.70800 -16.35145 -15.94157 -15.73075 -15.53336 -14.99236 -14.72461 -14.44795 -14.18976 -13.92133 -13.69519 -13.64803 -13.36003 -13.11501 -13.05081 -12.98406 -12.61700 -12.53096 -12.26015 -12.02079 -11.99298 -11.91497 -11.85008 -11.81591 -11.62469 -11.56905 -11.44419 -11.15990 -10.84582 -10.79932 -10.48131 -9.35930 -8.37370 -6.41449 1.25859 1.30636 1.41383 1.62444 2.25938 2.27604 2.91236 2.96387 3.41256 3.65266 3.79373 3.89206 3.91522 3.98109 4.04087 4.23376 4.25268 4.31591 4.54249 4.60661 4.65694 4.67254 4.72252 4.77463 4.86158 4.88002 4.88729 4.91404 4.95438 5.02843 5.06674 5.07749 5.10185 5.14319 5.22317 5.27107 5.27505 5.38726 5.42414 5.43116 5.48218 5.51570 5.69261 6.22396 6.59130 6.72777 7.18961 7.44898 8.79845 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.013851 B = 0.006596 C = 0.005171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.976066 B = 4243.965468 C = 5413.578299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.106 4.106 3 C -0.153 4.153 4 C 0.112 3.888 5 N -0.593 5.593 6 C 0.227 3.773 7 C -0.534 4.534 8 H 0.025 0.975 9 C 0.013 3.987 10 N -0.944 5.944 11 Si 0.942 3.058 12 H -0.248 1.248 13 H -0.279 1.279 14 H -0.259 1.259 15 C 0.528 3.472 16 O -0.597 6.597 17 C -0.187 4.187 18 H 0.151 0.849 19 C -0.126 4.126 20 C -0.096 4.096 21 C -0.080 4.080 22 C -0.111 4.111 23 C -0.123 4.123 24 C -0.096 4.096 25 H 0.055 0.945 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.053 0.947 31 H 0.033 0.967 32 H 0.091 0.909 33 H 0.067 0.933 34 H 0.011 0.989 35 H 0.052 0.948 36 H 0.268 0.732 37 H 0.141 0.859 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.097 0.903 41 H 0.079 0.921 42 H 0.087 0.913 43 H 0.069 0.931 44 H 0.056 0.944 45 H 0.054 0.946 46 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.174 -8.544 -13.634 21.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.126 4.126 3 C -0.210 4.210 4 C -0.011 4.011 5 N -0.322 5.322 6 C 0.105 3.895 7 C -0.572 4.572 8 H 0.044 0.956 9 C -0.185 4.185 10 N -0.584 5.584 11 Si 0.765 3.235 12 H -0.172 1.172 13 H -0.205 1.205 14 H -0.183 1.183 15 C 0.318 3.682 16 O -0.479 6.479 17 C -0.207 4.207 18 H 0.168 0.832 19 C -0.163 4.163 20 C -0.096 4.096 21 C -0.117 4.117 22 C -0.148 4.148 23 C -0.160 4.160 24 C -0.134 4.134 25 H 0.074 0.926 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.072 0.928 31 H 0.052 0.948 32 H 0.109 0.891 33 H 0.085 0.915 34 H 0.030 0.970 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.159 0.841 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.116 0.884 41 H 0.097 0.903 42 H 0.106 0.894 43 H 0.088 0.912 44 H 0.075 0.925 45 H 0.073 0.927 46 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -13.476 -8.489 -13.474 20.862 hybrid contribution 1.293 1.136 0.730 1.870 sum -12.183 -7.352 -12.744 19.102 Atomic orbital electron populations 1.21732 0.92112 1.02973 1.02590 1.21545 0.97628 0.96153 0.97245 1.21956 1.00226 0.96590 1.02232 1.21844 0.78245 1.01997 0.98990 1.47853 1.07775 1.20801 1.55781 1.19355 0.90886 0.87652 0.91619 1.21563 1.32327 1.07682 0.95653 0.95629 1.25813 0.95742 1.01889 0.95091 1.70050 1.40052 1.39333 1.08995 0.85789 0.78872 0.79524 0.79322 1.17201 1.20486 1.18350 1.20335 0.87782 0.82700 0.77431 1.90603 1.17255 1.79014 1.61034 1.22433 1.01776 0.88887 1.07646 0.83181 1.23114 1.00202 0.98120 0.94905 1.21882 0.99617 0.93627 0.94509 1.21972 0.93736 0.94513 1.01472 1.22459 0.98801 0.96988 0.96572 1.22356 0.98969 0.96845 0.97859 1.21625 0.98162 0.98069 0.95508 0.92578 0.91118 0.91050 0.90815 0.90935 0.92797 0.94801 0.89095 0.91480 0.97048 0.93065 0.92280 0.84084 0.90382 0.90430 0.88417 0.90264 0.89420 0.91204 0.92546 0.92731 0.96358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.19 71.98 0.66 -1.67 16 2 C -0.11 -2.58 2.96 -10.79 -0.03 -2.61 16 3 C -0.15 -4.13 8.18 71.98 0.59 -3.54 16 4 C 0.11 3.56 4.52 86.38 0.39 3.95 16 5 N -0.59 -25.45 2.28 -826.15 -1.88 -27.34 16 6 C 0.23 11.64 3.30 85.63 0.28 11.93 16 7 C -0.53 -32.73 9.94 25.60 0.25 -32.48 16 8 H 0.03 1.76 8.06 -2.91 -0.02 1.73 16 9 C 0.01 0.77 5.47 84.66 0.46 1.23 16 10 N -0.94 -61.22 13.96 21.45 0.30 -60.92 16 11 Si 0.94 46.00 27.47 68.60 1.88 47.88 16 12 H -0.25 -11.00 7.11 99.48 0.71 -10.29 16 13 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 14 H -0.26 -12.38 6.54 99.48 0.65 -11.72 16 15 C 0.53 22.86 6.28 87.66 0.55 23.41 16 16 O -0.60 -31.92 15.61 -3.03 -0.05 -31.96 16 17 C -0.19 -5.63 4.87 -11.66 -0.06 -5.68 16 18 H 0.15 3.44 6.34 -2.38 -0.02 3.43 16 19 C -0.13 -3.30 9.75 30.48 0.30 -3.00 16 20 C -0.10 -2.62 2.44 -52.02 -0.13 -2.75 16 21 C -0.08 -1.48 6.58 31.57 0.21 -1.27 16 22 C -0.11 -2.03 6.91 31.93 0.22 -1.81 16 23 C -0.12 -3.25 6.84 31.72 0.22 -3.04 16 24 C -0.10 -3.32 6.02 31.23 0.19 -3.13 16 25 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.07 1.74 7.71 -2.39 -0.02 1.72 16 29 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.03 1.11 5.89 -2.39 -0.01 1.09 16 32 H 0.09 2.47 6.51 -2.38 -0.02 2.46 16 33 H 0.07 2.33 8.07 -2.39 -0.02 2.31 16 34 H 0.01 0.65 6.48 -2.39 -0.02 0.63 16 35 H 0.05 2.41 5.41 -2.39 -0.01 2.39 16 36 H 0.27 16.13 8.31 -92.70 -0.77 15.36 16 37 H 0.14 2.43 8.14 -2.39 -0.02 2.41 16 38 H 0.08 2.50 7.69 -2.39 -0.02 2.48 16 39 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.10 1.26 8.11 -2.39 -0.02 1.24 16 41 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 46 H 0.02 0.81 7.22 -2.39 -0.02 0.79 16 Total: -1.00 -79.64 356.81 5.23 -74.41 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: 0.87 Total: 18.39 kcal Atomic # 6 Polarization: -24.56 SS G_CDS: 4.11 Total: -20.46 kcal Atomic # 7 Polarization: -86.67 SS G_CDS: -1.59 Total: -88.26 kcal Atomic # 8 Polarization: -31.92 SS G_CDS: -0.05 Total: -31.96 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 1.88 Total: 47.88 kcal Total: -79.64 5.23 -74.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747369060.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.371 kcal (2) G-P(sol) polarization free energy of solvation -79.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds