Wall clock time and date at job start Tue Mar 31 2020 01:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.47098 * 2 1 4 4 C 1.52994 * 109.47216 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47438 * 179.97438 * 4 3 2 6 6 C 1.52994 * 109.47438 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.47111 * 180.02562 * 6 5 4 8 8 N 1.46904 * 109.46982 * 180.02562 * 7 6 5 9 9 C 1.46901 * 111.00097 * 190.00239 * 8 7 6 10 10 C 1.50702 * 109.47272 * 71.28018 * 9 8 7 11 11 H 1.07998 * 120.00098 * 4.67122 * 10 9 8 12 12 C 1.37879 * 119.99918 * 184.66550 * 10 9 8 13 13 N 1.31520 * 120.00047 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 119.99705 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47591 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.47236 * 120.00713 * 14 12 10 17 17 H 1.48510 * 109.46985 * 240.00007 * 14 12 10 18 18 C 1.46898 * 110.99984 * 66.04581 * 8 7 6 19 19 C 1.50705 * 109.46857 * 199.53158 * 18 8 7 20 20 C 1.34513 * 125.78802 * 90.00306 * 19 18 8 21 21 C 1.41385 * 106.83918 * 179.97438 * 20 19 18 22 22 C 1.34515 * 106.83866 * 0.02562 * 21 20 19 23 23 O 1.34298 * 108.42387 * 359.73144 * 22 21 20 24 24 H 1.08995 * 109.46889 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47073 * 300.00608 * 1 2 3 26 26 H 1.09005 * 109.46998 * 60.00434 * 1 2 3 27 27 H 1.08995 * 109.47323 * 240.00117 * 2 1 3 28 28 H 1.08995 * 109.47072 * 119.99463 * 2 1 3 29 29 H 1.09001 * 109.47147 * 59.99197 * 3 2 1 30 30 H 1.09005 * 109.46842 * 299.99662 * 3 2 1 31 31 H 1.09006 * 109.47160 * 59.99435 * 4 3 2 32 32 H 1.09003 * 109.46836 * 300.00165 * 4 3 2 33 33 H 1.09001 * 109.46728 * 59.99509 * 5 4 3 34 34 H 1.09005 * 109.47047 * 300.00668 * 5 4 3 35 35 H 1.08993 * 109.47258 * 60.00037 * 6 5 4 36 36 H 1.09005 * 109.47096 * 300.00075 * 6 5 4 37 37 H 1.09000 * 109.47211 * 60.00463 * 7 6 5 38 38 H 1.08993 * 109.47435 * 299.99924 * 7 6 5 39 39 H 1.08996 * 109.47649 * 191.28620 * 9 8 7 40 40 H 1.09000 * 109.46875 * 311.28384 * 9 8 7 41 41 H 0.96991 * 119.99837 * 179.97438 * 13 12 10 42 42 H 1.08997 * 109.47017 * 79.53089 * 18 8 7 43 43 H 1.08998 * 109.47140 * 319.53246 * 18 8 7 44 44 H 1.07997 * 126.57998 * 0.02978 * 20 19 18 45 45 H 1.07997 * 126.57946 * 179.97438 * 21 20 19 46 46 H 1.08000 * 125.78506 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0800 2.8851 0.0000 6 6 5.6100 2.8851 0.0013 7 6 6.1199 4.3276 0.0013 8 7 7.5890 4.3276 0.0019 9 6 8.1153 5.6782 0.2401 10 6 7.8691 6.0675 1.6750 11 1 7.4400 5.3534 2.3623 12 6 8.1916 7.3353 2.1104 13 7 8.7138 8.2051 1.2734 14 14 7.8870 7.8176 3.8892 15 1 7.2969 6.6674 4.6199 16 1 9.1730 8.2005 4.5254 17 1 6.9495 8.9684 3.9364 18 6 8.1159 3.7706 -1.2511 19 6 9.5460 3.3409 -1.0475 20 6 9.9518 2.1238 -0.6433 21 6 11.3641 2.1602 -0.5886 22 6 11.7368 3.3975 -0.9622 23 8 10.6318 4.1066 -1.2443 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 1.6766 1.9564 0.8899 30 1 1.6767 1.9564 -0.8901 31 1 3.9337 0.9285 -0.8891 32 1 3.9329 0.9289 0.8909 33 1 3.7162 3.3994 0.8895 34 1 3.7170 3.3984 -0.8904 35 1 5.9741 2.3706 -0.8879 36 1 5.9726 2.3719 0.8920 37 1 5.7559 4.8417 0.8909 38 1 5.7574 4.8411 -0.8891 39 1 9.1865 5.6915 0.0387 40 1 7.6128 6.3855 -0.4196 41 1 8.9403 9.0971 1.5796 42 1 8.0721 4.5291 -2.0326 43 1 7.5164 2.9096 -1.5464 44 1 9.3200 1.2805 -0.4068 45 1 12.0181 1.3502 -0.3012 46 1 12.7527 3.7579 -1.0289 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000747960769.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:17 Heat of formation + Delta-G solvation = -16.695812 kcal Electronic energy + Delta-G solvation = -21584.220817 eV Core-core repulsion = 18474.400107 eV Total energy + Delta-G solvation = -3109.820710 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -42.00181 -37.45635 -36.22729 -33.55374 -32.66530 -32.32587 -30.38809 -29.34311 -26.98844 -25.75215 -24.13106 -22.40852 -21.26733 -21.07754 -20.72283 -20.42222 -19.49501 -16.92286 -16.36555 -16.00258 -15.56754 -15.02720 -14.68769 -14.33426 -14.18093 -14.10932 -13.66277 -13.31905 -13.06350 -12.58753 -12.31503 -12.27468 -12.20616 -11.94751 -11.84140 -11.62569 -11.45574 -11.25708 -11.09770 -10.92188 -10.78040 -10.68571 -10.64325 -10.51090 -10.15433 -10.05924 -9.71962 -9.42607 -9.16720 -8.40120 -7.96078 -7.29792 -5.98910 -4.00014 2.26309 3.10257 3.32569 3.39960 3.45183 3.55361 4.45125 4.59970 4.79679 4.94711 5.00670 5.13003 5.21812 5.32692 5.35915 5.41154 5.43431 5.48494 5.49017 5.63093 5.66972 5.73424 5.80328 5.86488 5.88056 5.90035 6.03356 6.07080 6.12918 6.18333 6.25093 6.25597 6.33376 6.39412 6.46418 6.60033 6.70865 6.79622 6.99227 7.29602 7.35229 7.69536 7.83733 8.11891 8.18294 8.53791 9.08144 9.63697 11.11790 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.010212 B = 0.004378 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2741.314300 B = 6394.756084 C = 8637.787165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.118 4.118 5 C -0.119 4.119 6 C -0.117 4.117 7 C 0.065 3.935 8 N -0.532 5.532 9 C 0.190 3.810 10 C -0.503 4.503 11 H 0.064 0.936 12 C 0.054 3.946 13 N -0.898 5.898 14 Si 0.896 3.104 15 H -0.272 1.272 16 H -0.285 1.285 17 H -0.285 1.285 18 C 0.125 3.875 19 C 0.024 3.976 20 C -0.211 4.211 21 C -0.219 4.219 22 C -0.050 4.050 23 O -0.170 6.170 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.068 0.932 37 H 0.087 0.913 38 H 0.020 0.980 39 H 0.032 0.968 40 H -0.004 1.004 41 H 0.260 0.740 42 H 0.041 0.959 43 H 0.093 0.907 44 H 0.141 0.859 45 H 0.141 0.859 46 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.260 -14.503 -5.499 17.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.159 4.159 4 C -0.156 4.156 5 C -0.157 4.157 6 C -0.155 4.155 7 C -0.063 4.063 8 N -0.257 5.257 9 C 0.065 3.935 10 C -0.542 4.542 11 H 0.082 0.918 12 C -0.147 4.147 13 N -0.538 5.538 14 Si 0.724 3.276 15 H -0.196 1.196 16 H -0.211 1.211 17 H -0.211 1.211 18 C -0.003 4.003 19 C -0.027 4.027 20 C -0.231 4.231 21 C -0.238 4.238 22 C -0.118 4.118 23 O -0.065 6.065 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.087 0.913 37 H 0.105 0.895 38 H 0.038 0.962 39 H 0.050 0.950 40 H 0.014 0.986 41 H 0.069 0.931 42 H 0.059 0.941 43 H 0.111 0.889 44 H 0.159 0.841 45 H 0.158 0.842 46 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -7.053 -14.297 -5.219 16.774 hybrid contribution -0.102 0.740 0.458 0.877 sum -7.156 -13.556 -4.760 16.051 Atomic orbital electron populations 1.21786 0.96179 1.01323 1.01765 1.21548 0.95590 0.97322 1.01870 1.21643 0.95914 0.96322 1.01994 1.21599 0.94797 0.97336 1.01850 1.21564 0.95961 0.96143 1.01999 1.21677 0.94128 0.97768 1.01923 1.21996 0.87857 0.95195 1.01223 1.62125 1.06555 1.27439 1.29580 1.19818 0.95494 0.81307 0.96853 1.21174 1.40910 0.97072 0.95002 0.91810 1.24992 0.95485 0.96483 0.97713 1.69979 1.43528 1.05621 1.34663 0.86473 0.77828 0.78372 0.84953 1.19636 1.21072 1.21127 1.20546 0.86451 0.99955 0.93390 1.22428 0.88351 0.89607 1.02316 1.21383 0.94730 0.98529 1.08458 1.21707 0.95595 0.98223 1.08274 1.23875 0.90591 0.91713 1.05636 1.84086 1.14240 1.40758 1.67413 0.93027 0.92790 0.92855 0.92213 0.92131 0.92052 0.92187 0.92327 0.92068 0.91871 0.92385 0.92779 0.91342 0.89496 0.96168 0.94971 0.98639 0.93055 0.94069 0.88882 0.84088 0.84160 0.78851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.91 37.16 0.37 -0.79 16 2 C -0.13 -1.05 5.93 -26.73 -0.16 -1.21 16 3 C -0.12 -1.14 5.21 -26.73 -0.14 -1.28 16 4 C -0.12 -1.24 5.21 -26.74 -0.14 -1.38 16 5 C -0.12 -1.46 5.21 -26.74 -0.14 -1.60 16 6 C -0.12 -1.71 5.19 -26.73 -0.14 -1.85 16 7 C 0.07 1.22 4.81 -3.82 -0.02 1.20 16 8 N -0.53 -11.47 4.38 -237.52 -1.04 -12.51 16 9 C 0.19 5.05 4.55 -4.97 -0.02 5.03 16 10 C -0.50 -14.35 8.37 -34.44 -0.29 -14.63 16 11 H 0.06 1.81 7.68 -52.49 -0.40 1.41 16 12 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 13 N -0.90 -27.16 13.29 55.43 0.74 -26.42 16 14 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 15 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 16 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 17 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 18 C 0.12 2.31 5.38 -4.97 -0.03 2.28 16 19 C 0.02 0.46 6.23 -35.62 -0.22 0.24 16 20 C -0.21 -3.61 10.81 -39.70 -0.43 -4.04 16 21 C -0.22 -3.43 10.91 -39.70 -0.43 -3.86 16 22 C -0.05 -0.81 12.09 29.42 0.36 -0.46 16 23 O -0.17 -3.41 9.99 5.72 0.06 -3.35 16 24 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.05 0.73 6.25 -51.93 -0.32 0.41 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.09 1.80 7.15 -51.93 -0.37 1.43 16 38 H 0.02 0.37 8.12 -51.93 -0.42 -0.05 16 39 H 0.03 0.94 6.81 -51.93 -0.35 0.58 16 40 H 0.00 -0.12 8.06 -51.93 -0.42 -0.54 16 41 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 42 H 0.04 0.78 8.00 -51.93 -0.42 0.36 16 43 H 0.09 1.43 5.88 -51.93 -0.31 1.13 16 44 H 0.14 2.12 8.06 -52.49 -0.42 1.70 16 45 H 0.14 1.77 8.06 -52.49 -0.42 1.34 16 46 H 0.19 2.36 8.06 -52.49 -0.42 1.93 16 LS Contribution 371.93 15.07 5.60 5.60 Total: -1.00 -31.31 371.93 -9.68 -41.00 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -8.49 Total: -0.39 kcal Atomic # 6 Polarization: -19.35 SS G_CDS: -1.53 Total: -20.88 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: -0.30 Total: -38.93 kcal Atomic # 8 Polarization: -3.41 SS G_CDS: 0.06 Total: -3.35 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.31 -9.68 -41.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747960769.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.299 kcal (2) G-P(sol) polarization free energy of solvation -31.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds