Wall clock time and date at job start Tue Mar 31 2020 01:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.47098 * 2 1 4 4 C 1.52994 * 109.47216 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47438 * 179.97438 * 4 3 2 6 6 C 1.52994 * 109.47438 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.47111 * 180.02562 * 6 5 4 8 8 N 1.46904 * 109.46982 * 180.02562 * 7 6 5 9 9 C 1.46901 * 111.00097 * 190.00239 * 8 7 6 10 10 C 1.50702 * 109.47272 * 71.28018 * 9 8 7 11 11 H 1.07998 * 120.00098 * 4.67122 * 10 9 8 12 12 C 1.37879 * 119.99918 * 184.66550 * 10 9 8 13 13 N 1.31520 * 120.00047 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 119.99705 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47591 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.47236 * 120.00713 * 14 12 10 17 17 H 1.48510 * 109.46985 * 240.00007 * 14 12 10 18 18 C 1.46898 * 110.99984 * 66.04581 * 8 7 6 19 19 C 1.50705 * 109.46857 * 199.53158 * 18 8 7 20 20 C 1.34513 * 125.78802 * 90.00306 * 19 18 8 21 21 C 1.41385 * 106.83918 * 179.97438 * 20 19 18 22 22 C 1.34515 * 106.83866 * 0.02562 * 21 20 19 23 23 O 1.34298 * 108.42387 * 359.73144 * 22 21 20 24 24 H 1.08995 * 109.46889 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47073 * 300.00608 * 1 2 3 26 26 H 1.09005 * 109.46998 * 60.00434 * 1 2 3 27 27 H 1.08995 * 109.47323 * 240.00117 * 2 1 3 28 28 H 1.08995 * 109.47072 * 119.99463 * 2 1 3 29 29 H 1.09001 * 109.47147 * 59.99197 * 3 2 1 30 30 H 1.09005 * 109.46842 * 299.99662 * 3 2 1 31 31 H 1.09006 * 109.47160 * 59.99435 * 4 3 2 32 32 H 1.09003 * 109.46836 * 300.00165 * 4 3 2 33 33 H 1.09001 * 109.46728 * 59.99509 * 5 4 3 34 34 H 1.09005 * 109.47047 * 300.00668 * 5 4 3 35 35 H 1.08993 * 109.47258 * 60.00037 * 6 5 4 36 36 H 1.09005 * 109.47096 * 300.00075 * 6 5 4 37 37 H 1.09000 * 109.47211 * 60.00463 * 7 6 5 38 38 H 1.08993 * 109.47435 * 299.99924 * 7 6 5 39 39 H 1.08996 * 109.47649 * 191.28620 * 9 8 7 40 40 H 1.09000 * 109.46875 * 311.28384 * 9 8 7 41 41 H 0.96991 * 119.99837 * 179.97438 * 13 12 10 42 42 H 1.08997 * 109.47017 * 79.53089 * 18 8 7 43 43 H 1.08998 * 109.47140 * 319.53246 * 18 8 7 44 44 H 1.07997 * 126.57998 * 0.02978 * 20 19 18 45 45 H 1.07997 * 126.57946 * 179.97438 * 21 20 19 46 46 H 1.08000 * 125.78506 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0800 2.8851 0.0000 6 6 5.6100 2.8851 0.0013 7 6 6.1199 4.3276 0.0013 8 7 7.5890 4.3276 0.0019 9 6 8.1153 5.6782 0.2401 10 6 7.8691 6.0675 1.6750 11 1 7.4400 5.3534 2.3623 12 6 8.1916 7.3353 2.1104 13 7 8.7138 8.2051 1.2734 14 14 7.8870 7.8176 3.8892 15 1 7.2969 6.6674 4.6199 16 1 9.1730 8.2005 4.5254 17 1 6.9495 8.9684 3.9364 18 6 8.1159 3.7706 -1.2511 19 6 9.5460 3.3409 -1.0475 20 6 9.9518 2.1238 -0.6433 21 6 11.3641 2.1602 -0.5886 22 6 11.7368 3.3975 -0.9622 23 8 10.6318 4.1066 -1.2443 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 1.6766 1.9564 0.8899 30 1 1.6767 1.9564 -0.8901 31 1 3.9337 0.9285 -0.8891 32 1 3.9329 0.9289 0.8909 33 1 3.7162 3.3994 0.8895 34 1 3.7170 3.3984 -0.8904 35 1 5.9741 2.3706 -0.8879 36 1 5.9726 2.3719 0.8920 37 1 5.7559 4.8417 0.8909 38 1 5.7574 4.8411 -0.8891 39 1 9.1865 5.6915 0.0387 40 1 7.6128 6.3855 -0.4196 41 1 8.9403 9.0971 1.5796 42 1 8.0721 4.5291 -2.0326 43 1 7.5164 2.9096 -1.5464 44 1 9.3200 1.2805 -0.4068 45 1 12.0181 1.3502 -0.3012 46 1 12.7527 3.7579 -1.0289 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000747960769.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:16 Heat of formation + Delta-G solvation = -33.674214 kcal Electronic energy + Delta-G solvation = -21584.957056 eV Core-core repulsion = 18474.400107 eV Total energy + Delta-G solvation = -3110.556949 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.35831 -38.96284 -37.21022 -34.97936 -34.31828 -33.76981 -31.67390 -30.70746 -28.74158 -26.91562 -25.76790 -23.81914 -22.55376 -22.21801 -21.79997 -21.59547 -20.96145 -18.62375 -18.17707 -17.05930 -16.91575 -16.74814 -16.07986 -15.77003 -15.59411 -15.32973 -14.74766 -14.52978 -14.09103 -14.04961 -13.88665 -13.59715 -13.50808 -13.27375 -13.06703 -12.90568 -12.77873 -12.68765 -12.55964 -12.47354 -12.05667 -11.99237 -11.79732 -11.70477 -11.40786 -11.29444 -11.21179 -11.07411 -10.72408 -10.61208 -9.32696 -9.06769 -8.20866 -6.31325 0.90450 1.38305 1.39207 1.53083 1.81937 2.27637 2.39092 3.11108 3.31975 3.87201 3.90206 4.01887 4.13367 4.21521 4.23957 4.25408 4.34859 4.41741 4.44677 4.51854 4.55807 4.73461 4.79515 4.85882 4.92082 4.98839 5.02066 5.06413 5.10416 5.12629 5.15127 5.19958 5.24445 5.29462 5.30497 5.36938 5.41040 5.49794 5.58008 5.60760 5.64807 5.75959 6.05125 6.28699 6.39990 6.55110 6.85096 7.38029 8.90182 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.010212 B = 0.004378 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2741.314300 B = 6394.756084 C = 8637.787165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.120 4.120 4 C -0.112 4.112 5 C -0.114 4.114 6 C -0.103 4.103 7 C 0.065 3.935 8 N -0.537 5.537 9 C 0.210 3.790 10 C -0.518 4.518 11 H 0.061 0.939 12 C 0.000 4.000 13 N -0.935 5.935 14 Si 0.969 3.031 15 H -0.263 1.263 16 H -0.279 1.279 17 H -0.276 1.276 18 C 0.127 3.873 19 C -0.017 4.017 20 C -0.204 4.204 21 C -0.220 4.220 22 C -0.060 4.060 23 O -0.206 6.206 24 H 0.059 0.941 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.020 0.980 39 H 0.000 1.000 40 H -0.038 1.038 41 H 0.264 0.736 42 H 0.029 0.971 43 H 0.129 0.871 44 H 0.163 0.837 45 H 0.175 0.825 46 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.706 -16.598 -4.789 18.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.157 4.157 4 C -0.150 4.150 5 C -0.152 4.152 6 C -0.140 4.140 7 C -0.062 4.062 8 N -0.262 5.262 9 C 0.083 3.917 10 C -0.557 4.557 11 H 0.079 0.921 12 C -0.198 4.198 13 N -0.576 5.576 14 Si 0.793 3.207 15 H -0.187 1.187 16 H -0.205 1.205 17 H -0.202 1.202 18 C 0.000 4.000 19 C -0.068 4.068 20 C -0.223 4.223 21 C -0.238 4.238 22 C -0.127 4.127 23 O -0.103 6.103 24 H 0.078 0.922 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.038 0.962 39 H 0.018 0.982 40 H -0.020 1.020 41 H 0.072 0.928 42 H 0.047 0.953 43 H 0.146 0.854 44 H 0.181 0.819 45 H 0.192 0.808 46 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -7.515 -16.420 -4.517 18.615 hybrid contribution 0.096 1.365 0.183 1.381 sum -7.420 -15.055 -4.333 17.335 Atomic orbital electron populations 1.21788 0.95617 1.01888 1.01792 1.21536 0.96110 0.96491 1.02093 1.21620 0.95103 0.97129 1.01873 1.21539 0.95499 0.95701 1.02245 1.21523 0.94139 0.97701 1.01860 1.21557 0.95627 0.94440 1.02400 1.22040 0.86221 0.98040 0.99898 1.62054 1.08169 1.24085 1.31861 1.19378 0.93326 0.83468 0.95487 1.21450 1.40935 0.97442 0.95838 0.92057 1.25936 0.94956 0.96375 1.02519 1.70112 1.44389 1.06107 1.36986 0.85343 0.77944 0.78323 0.79078 1.18653 1.20499 1.20153 1.20645 0.87316 1.00599 0.91451 1.22629 0.88380 0.90661 1.05090 1.21773 0.95906 0.98139 1.06520 1.22143 0.95387 0.98856 1.07459 1.24732 0.91098 0.92080 1.04754 1.84057 1.15516 1.42341 1.68399 0.92223 0.92924 0.92706 0.91779 0.92118 0.92500 0.92044 0.91452 0.92119 0.92699 0.91957 0.91036 0.91936 0.92163 0.96187 0.98189 1.01981 0.92753 0.95317 0.85371 0.81910 0.80751 0.75561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.91 71.98 0.71 -1.34 16 2 C -0.12 -1.85 5.93 30.60 0.18 -1.66 16 3 C -0.12 -2.04 5.21 30.59 0.16 -1.88 16 4 C -0.11 -2.12 5.21 30.59 0.16 -1.96 16 5 C -0.11 -2.67 5.21 30.59 0.16 -2.51 16 6 C -0.10 -2.87 5.19 30.59 0.16 -2.71 16 7 C 0.07 2.49 4.81 86.30 0.41 2.91 16 8 N -0.54 -23.77 4.38 -905.37 -3.96 -27.74 16 9 C 0.21 11.72 4.55 85.56 0.39 12.11 16 10 C -0.52 -30.47 8.37 25.60 0.21 -30.26 16 11 H 0.06 3.55 7.68 -2.91 -0.02 3.53 16 12 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 13 N -0.94 -58.15 13.29 21.45 0.28 -57.87 16 14 Si 0.97 45.51 29.54 68.60 2.03 47.54 16 15 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16 16 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 17 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 18 C 0.13 4.77 5.38 85.56 0.46 5.23 16 19 C -0.02 -0.67 6.23 24.83 0.15 -0.52 16 20 C -0.20 -6.63 10.81 22.19 0.24 -6.39 16 21 C -0.22 -6.39 10.91 22.19 0.24 -6.15 16 22 C -0.06 -1.89 12.09 66.97 0.81 -1.08 16 23 O -0.21 -8.48 9.99 -2.46 -0.02 -8.51 16 24 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 27 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 31 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 32 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 35 H 0.07 1.76 6.25 -2.39 -0.01 1.74 16 36 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 37 H 0.06 2.59 7.15 -2.39 -0.02 2.57 16 38 H 0.02 0.75 8.12 -2.39 -0.02 0.73 16 39 H 0.00 0.00 6.81 -2.39 -0.02 -0.02 16 40 H -0.04 -2.29 8.06 -2.39 -0.02 -2.31 16 41 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 42 H 0.03 1.13 8.00 -2.39 -0.02 1.11 16 43 H 0.13 3.77 5.88 -2.39 -0.01 3.75 16 44 H 0.16 4.43 8.06 -2.91 -0.02 4.41 16 45 H 0.18 3.75 8.06 -2.91 -0.02 3.73 16 46 H 0.23 5.14 8.06 -2.91 -0.02 5.11 16 Total: -1.00 -69.89 371.93 4.15 -65.75 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: 0.90 Total: 16.58 kcal Atomic # 6 Polarization: -40.67 SS G_CDS: 4.92 Total: -35.75 kcal Atomic # 7 Polarization: -81.92 SS G_CDS: -3.68 Total: -85.60 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: -0.02 Total: -8.51 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -69.89 4.15 -65.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747960769.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.071 kcal (2) G-P(sol) polarization free energy of solvation -69.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds