Wall clock time and date at job start Tue Mar 31 2020 02:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47121 * 2 1 4 4 C 1.52993 * 109.47302 * 120.00493 * 2 1 3 5 5 N 1.46506 * 109.47335 * 175.45100 * 4 2 1 6 6 C 1.46499 * 120.00198 * 273.43131 * 5 4 2 7 7 C 1.50704 * 109.46907 * 265.11020 * 6 5 4 8 8 H 1.08001 * 119.99940 * 5.04897 * 7 6 5 9 9 C 1.37877 * 120.00090 * 185.05165 * 7 6 5 10 10 N 1.31513 * 119.99706 * 180.02562 * 9 7 6 11 11 Si 1.86796 * 119.99881 * 359.97438 * 9 7 6 12 12 H 1.48504 * 109.47018 * 90.00032 * 11 9 7 13 13 H 1.48500 * 109.47414 * 210.00055 * 11 9 7 14 14 H 1.48498 * 109.47269 * 330.00212 * 11 9 7 15 15 C 1.34779 * 119.99653 * 93.42004 * 5 4 2 16 16 O 1.21611 * 119.99595 * 180.02562 * 15 5 4 17 17 C 1.47098 * 120.00252 * 0.02562 * 15 5 4 18 18 C 1.32998 * 119.99585 * 186.72311 * 17 15 5 19 19 C 1.51260 * 120.85440 * 18.15330 * 18 17 15 20 20 C 1.53663 * 108.31170 * 128.61981 * 19 18 17 21 21 C 1.52954 * 109.32404 * 54.86058 * 20 19 18 22 22 C 1.52963 * 109.81899 * 296.27234 * 21 20 19 23 23 C 1.51275 * 120.84567 * 198.43696 * 18 17 15 24 24 H 1.09000 * 109.46969 * 299.99393 * 1 2 3 25 25 H 1.08999 * 109.47123 * 59.99650 * 1 2 3 26 26 H 1.08993 * 109.46978 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46969 * 240.00607 * 2 1 3 28 28 H 1.09010 * 109.46922 * 64.48914 * 3 2 1 29 29 H 1.08994 * 109.47210 * 184.48702 * 3 2 1 30 30 H 1.08998 * 109.47149 * 304.49118 * 3 2 1 31 31 H 1.08996 * 109.47428 * 55.45455 * 4 2 1 32 32 H 1.09005 * 109.47446 * 295.45230 * 4 2 1 33 33 H 1.09002 * 109.46836 * 25.10095 * 6 5 4 34 34 H 1.08999 * 109.47320 * 145.10660 * 6 5 4 35 35 H 0.97002 * 119.99748 * 180.02562 * 10 9 7 36 36 H 1.07997 * 120.00300 * 6.71210 * 17 15 5 37 37 H 1.09004 * 109.62446 * 248.39333 * 19 18 17 38 38 H 1.08999 * 109.62464 * 8.95868 * 19 18 17 39 39 H 1.09001 * 109.62587 * 294.84424 * 20 19 18 40 40 H 1.09005 * 109.42690 * 174.76034 * 20 19 18 41 41 H 1.09000 * 109.41527 * 176.16460 * 21 20 19 42 42 H 1.09007 * 109.41380 * 56.38134 * 21 20 19 43 43 H 1.08999 * 109.47936 * 303.61903 * 22 21 20 44 44 H 1.09002 * 109.48152 * 183.57707 * 22 21 20 45 45 H 1.09006 * 109.62131 * 351.03606 * 23 18 17 46 46 H 1.08995 * 109.62755 * 111.60607 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 3.5010 -0.8169 1.1956 6 6 4.1367 -1.9385 0.4998 7 6 4.4589 -3.0270 1.4910 8 1 4.1420 -2.9321 2.5191 9 6 5.1582 -4.1439 1.0855 10 7 5.4388 -5.0939 1.9504 11 14 5.7057 -4.3082 -0.6929 12 1 7.0558 -3.7105 -0.8524 13 1 5.7533 -5.7449 -1.0655 14 1 4.7435 -3.5998 -1.5746 15 6 4.2601 0.1272 1.7863 16 8 5.4729 0.0480 1.7415 17 6 3.6219 1.2532 2.4853 18 6 4.3644 2.2531 2.9519 19 6 5.7719 2.4762 2.4449 20 6 5.9039 3.9465 2.0180 21 6 5.5044 4.8503 3.1855 22 6 4.0295 4.6333 3.5283 23 6 3.8250 3.1925 4.0078 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5137 -0.8900 28 1 1.7438 1.9326 0.9276 29 1 3.1270 1.4435 -0.0804 30 1 1.6125 1.9790 -0.8470 31 1 1.6118 -1.7228 1.2907 32 1 1.7448 -0.1627 2.1374 33 1 3.4575 -2.3274 -0.2588 34 1 5.0559 -1.5968 0.0238 35 1 5.9312 -5.8795 1.6652 36 1 2.5503 1.2680 2.6194 37 1 6.4860 2.2570 3.2388 38 1 5.9603 1.8271 1.5898 39 1 5.2503 4.1409 1.1677 40 1 6.9370 4.1510 1.7368 41 1 5.6622 5.8924 2.9075 42 1 6.1173 4.6116 4.0548 43 1 3.4204 4.8115 2.6421 44 1 3.7342 5.3246 4.3177 45 1 2.7619 3.0037 4.1572 46 1 4.3621 3.0383 4.9437 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751375146.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:03 Heat of formation + Delta-G solvation = -41.099536 kcal Electronic energy + Delta-G solvation = -23053.429296 eV Core-core repulsion = 19942.550361 eV Total energy + Delta-G solvation = -3110.878935 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.64044 -37.92757 -36.28200 -33.76302 -32.43504 -32.17730 -30.89105 -28.59017 -27.13596 -26.47325 -25.37315 -22.90046 -22.67522 -20.94416 -20.26350 -19.10024 -17.54083 -16.83895 -16.66841 -15.54361 -14.93417 -14.72957 -14.46649 -14.26003 -14.03250 -13.84024 -13.53524 -13.30119 -12.80462 -12.67725 -12.48241 -12.39436 -12.25427 -11.98972 -11.71164 -11.68665 -11.57469 -11.09194 -11.02463 -10.93603 -10.85079 -10.71159 -10.56373 -10.46100 -10.34560 -10.10327 -10.06961 -9.45677 -8.81347 -8.53970 -8.46466 -7.56151 -6.03703 -4.01525 1.76528 3.32245 3.38359 3.40195 3.91752 4.02019 4.44120 4.73969 4.74775 4.89092 5.00190 5.07243 5.12207 5.20934 5.27167 5.29682 5.42827 5.45334 5.53238 5.61047 5.65621 5.71333 5.71893 5.83793 5.88878 5.93487 5.95477 6.00934 6.04561 6.07339 6.12541 6.17830 6.24491 6.35830 6.42807 6.48080 6.52938 6.75287 6.79970 6.90837 7.06301 7.47572 7.66665 8.38797 8.53031 8.99930 9.13182 9.57447 11.09973 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.016124 B = 0.005510 C = 0.004586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.122129 B = 5080.422464 C = 6103.981570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.117 4.117 3 C -0.144 4.144 4 C 0.116 3.884 5 N -0.588 5.588 6 C 0.219 3.781 7 C -0.524 4.524 8 H 0.074 0.926 9 C 0.072 3.928 10 N -0.899 5.899 11 Si 0.876 3.124 12 H -0.274 1.274 13 H -0.286 1.286 14 H -0.267 1.267 15 C 0.542 3.458 16 O -0.537 6.537 17 C -0.217 4.217 18 C -0.044 4.044 19 C -0.106 4.106 20 C -0.116 4.116 21 C -0.122 4.122 22 C -0.116 4.116 23 C -0.089 4.089 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.073 0.927 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.048 0.952 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.028 0.972 34 H 0.032 0.968 35 H 0.264 0.736 36 H 0.124 0.876 37 H 0.072 0.928 38 H 0.109 0.891 39 H 0.059 0.941 40 H 0.063 0.937 41 H 0.058 0.942 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.061 0.939 45 H 0.070 0.930 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.936 18.801 -0.490 20.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.137 4.137 3 C -0.201 4.201 4 C -0.009 4.009 5 N -0.318 5.318 6 C 0.098 3.902 7 C -0.563 4.563 8 H 0.092 0.908 9 C -0.130 4.130 10 N -0.538 5.538 11 Si 0.703 3.297 12 H -0.200 1.200 13 H -0.212 1.212 14 H -0.192 1.192 15 C 0.332 3.668 16 O -0.417 6.417 17 C -0.237 4.237 18 C -0.046 4.046 19 C -0.142 4.142 20 C -0.154 4.154 21 C -0.159 4.159 22 C -0.153 4.153 23 C -0.126 4.126 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.091 0.909 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.046 0.954 34 H 0.050 0.950 35 H 0.073 0.927 36 H 0.141 0.859 37 H 0.091 0.909 38 H 0.127 0.873 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.088 0.912 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.212 18.538 -0.516 19.898 hybrid contribution 0.150 -0.354 -0.790 0.878 sum -7.062 18.184 -1.306 19.551 Atomic orbital electron populations 1.21760 0.95012 1.01818 1.01423 1.21578 0.95429 0.96813 0.99871 1.21899 1.01468 0.95708 1.01038 1.21587 0.81335 1.01189 0.96760 1.47820 1.05364 1.24916 1.53698 1.19585 0.93366 0.84307 0.92896 1.21333 1.35976 1.01557 0.97392 0.90837 1.24853 0.95197 0.95594 0.97343 1.69902 1.40393 1.09122 1.34350 0.86851 0.79965 0.77255 0.85597 1.19956 1.21164 1.19171 1.18317 0.86791 0.82725 0.78918 1.90661 1.13836 1.76850 1.60385 1.22643 0.99639 0.96208 1.05253 1.22509 0.96114 0.93322 0.92637 1.21362 0.93192 0.96095 1.03573 1.21675 1.01110 0.94869 0.97718 1.21549 0.96232 0.99183 0.98969 1.21568 0.96914 0.95832 1.01019 1.20914 1.00951 0.93856 0.96864 0.92799 0.92868 0.92473 0.90858 0.92699 0.92504 0.93312 0.90202 0.91068 0.95426 0.94956 0.92659 0.85862 0.90926 0.87271 0.92218 0.91854 0.92331 0.91938 0.91896 0.91978 0.91159 0.90043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.19 37.16 0.34 -1.17 16 2 C -0.12 -1.58 3.13 -90.62 -0.28 -1.86 16 3 C -0.14 -1.82 7.69 37.16 0.29 -1.54 16 4 C 0.12 1.87 4.88 -4.04 -0.02 1.85 16 5 N -0.59 -12.31 2.30 -176.45 -0.41 -12.71 16 6 C 0.22 5.44 4.20 -5.19 -0.02 5.42 16 7 C -0.52 -15.35 9.90 -34.44 -0.34 -15.70 16 8 H 0.07 2.37 8.06 -52.49 -0.42 1.95 16 9 C 0.07 2.14 5.47 -17.82 -0.10 2.05 16 10 N -0.90 -28.23 13.96 55.43 0.77 -27.45 16 11 Si 0.88 22.04 27.37 -169.99 -4.65 17.38 16 12 H -0.27 -6.94 7.11 56.52 0.40 -6.54 16 13 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 14 H -0.27 -6.32 6.69 56.52 0.38 -5.94 16 15 C 0.54 11.37 6.21 -12.67 -0.08 11.29 16 16 O -0.54 -13.28 13.16 5.27 0.07 -13.21 16 17 C -0.22 -3.47 6.78 -37.81 -0.26 -3.72 16 18 C -0.04 -0.63 5.34 -100.61 -0.54 -1.17 16 19 C -0.11 -1.60 5.17 -27.26 -0.14 -1.74 16 20 C -0.12 -1.36 5.95 -26.41 -0.16 -1.52 16 21 C -0.12 -1.18 5.81 -26.77 -0.16 -1.34 16 22 C -0.12 -1.07 5.94 -26.63 -0.16 -1.23 16 23 C -0.09 -0.96 6.04 -27.48 -0.17 -1.13 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.05 0.63 6.56 -51.92 -0.34 0.29 16 29 H 0.06 0.85 6.58 -51.93 -0.34 0.51 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 1.34 8.10 -51.93 -0.42 0.92 16 32 H 0.07 1.01 5.84 -51.93 -0.30 0.70 16 33 H 0.03 0.65 7.44 -51.93 -0.39 0.27 16 34 H 0.03 0.85 6.72 -51.93 -0.35 0.51 16 35 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 36 H 0.12 1.67 4.94 -52.49 -0.26 1.41 16 37 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.11 2.02 5.25 -51.93 -0.27 1.74 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.07 0.68 7.95 -51.93 -0.41 0.27 16 46 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 350.99 15.07 5.29 5.29 Total: -1.00 -33.18 350.99 -8.88 -42.06 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -8.16 Total: 0.15 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: -1.79 Total: -11.51 kcal Atomic # 7 Polarization: -40.54 SS G_CDS: 0.37 Total: -40.17 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: 0.07 Total: -13.21 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.65 Total: 17.38 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.18 -8.88 -42.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751375146.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.957 kcal (2) G-P(sol) polarization free energy of solvation -33.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds