Wall clock time and date at job start Tue Mar 31 2020 02:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47121 * 2 1 4 4 C 1.52993 * 109.47302 * 120.00493 * 2 1 3 5 5 N 1.46506 * 109.47335 * 175.45100 * 4 2 1 6 6 C 1.46499 * 120.00198 * 273.43131 * 5 4 2 7 7 C 1.50704 * 109.46907 * 265.11020 * 6 5 4 8 8 H 1.08001 * 119.99940 * 5.04897 * 7 6 5 9 9 C 1.37877 * 120.00090 * 185.05165 * 7 6 5 10 10 N 1.31513 * 119.99706 * 180.02562 * 9 7 6 11 11 Si 1.86796 * 119.99881 * 359.97438 * 9 7 6 12 12 H 1.48504 * 109.47018 * 90.00032 * 11 9 7 13 13 H 1.48500 * 109.47414 * 210.00055 * 11 9 7 14 14 H 1.48498 * 109.47269 * 330.00212 * 11 9 7 15 15 C 1.34779 * 119.99653 * 93.42004 * 5 4 2 16 16 O 1.21611 * 119.99595 * 180.02562 * 15 5 4 17 17 C 1.47098 * 120.00252 * 0.02562 * 15 5 4 18 18 C 1.32998 * 119.99585 * 186.72311 * 17 15 5 19 19 C 1.51260 * 120.85440 * 18.15330 * 18 17 15 20 20 C 1.53663 * 108.31170 * 128.61981 * 19 18 17 21 21 C 1.52954 * 109.32404 * 54.86058 * 20 19 18 22 22 C 1.52963 * 109.81899 * 296.27234 * 21 20 19 23 23 C 1.51275 * 120.84567 * 198.43696 * 18 17 15 24 24 H 1.09000 * 109.46969 * 299.99393 * 1 2 3 25 25 H 1.08999 * 109.47123 * 59.99650 * 1 2 3 26 26 H 1.08993 * 109.46978 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46969 * 240.00607 * 2 1 3 28 28 H 1.09010 * 109.46922 * 64.48914 * 3 2 1 29 29 H 1.08994 * 109.47210 * 184.48702 * 3 2 1 30 30 H 1.08998 * 109.47149 * 304.49118 * 3 2 1 31 31 H 1.08996 * 109.47428 * 55.45455 * 4 2 1 32 32 H 1.09005 * 109.47446 * 295.45230 * 4 2 1 33 33 H 1.09002 * 109.46836 * 25.10095 * 6 5 4 34 34 H 1.08999 * 109.47320 * 145.10660 * 6 5 4 35 35 H 0.97002 * 119.99748 * 180.02562 * 10 9 7 36 36 H 1.07997 * 120.00300 * 6.71210 * 17 15 5 37 37 H 1.09004 * 109.62446 * 248.39333 * 19 18 17 38 38 H 1.08999 * 109.62464 * 8.95868 * 19 18 17 39 39 H 1.09001 * 109.62587 * 294.84424 * 20 19 18 40 40 H 1.09005 * 109.42690 * 174.76034 * 20 19 18 41 41 H 1.09000 * 109.41527 * 176.16460 * 21 20 19 42 42 H 1.09007 * 109.41380 * 56.38134 * 21 20 19 43 43 H 1.08999 * 109.47936 * 303.61903 * 22 21 20 44 44 H 1.09002 * 109.48152 * 183.57707 * 22 21 20 45 45 H 1.09006 * 109.62131 * 351.03606 * 23 18 17 46 46 H 1.08995 * 109.62755 * 111.60607 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 3.5010 -0.8169 1.1956 6 6 4.1367 -1.9385 0.4998 7 6 4.4589 -3.0270 1.4910 8 1 4.1420 -2.9321 2.5191 9 6 5.1582 -4.1439 1.0855 10 7 5.4388 -5.0939 1.9504 11 14 5.7057 -4.3082 -0.6929 12 1 7.0558 -3.7105 -0.8524 13 1 5.7533 -5.7449 -1.0655 14 1 4.7435 -3.5998 -1.5746 15 6 4.2601 0.1272 1.7863 16 8 5.4729 0.0480 1.7415 17 6 3.6219 1.2532 2.4853 18 6 4.3644 2.2531 2.9519 19 6 5.7719 2.4762 2.4449 20 6 5.9039 3.9465 2.0180 21 6 5.5044 4.8503 3.1855 22 6 4.0295 4.6333 3.5283 23 6 3.8250 3.1925 4.0078 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5137 -0.8900 28 1 1.7438 1.9326 0.9276 29 1 3.1270 1.4435 -0.0804 30 1 1.6125 1.9790 -0.8470 31 1 1.6118 -1.7228 1.2907 32 1 1.7448 -0.1627 2.1374 33 1 3.4575 -2.3274 -0.2588 34 1 5.0559 -1.5968 0.0238 35 1 5.9312 -5.8795 1.6652 36 1 2.5503 1.2680 2.6194 37 1 6.4860 2.2570 3.2388 38 1 5.9603 1.8271 1.5898 39 1 5.2503 4.1409 1.1677 40 1 6.9370 4.1510 1.7368 41 1 5.6622 5.8924 2.9075 42 1 6.1173 4.6116 4.0548 43 1 3.4204 4.8115 2.6421 44 1 3.7342 5.3246 4.3177 45 1 2.7619 3.0037 4.1572 46 1 4.3621 3.0383 4.9437 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751375146.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:02 Heat of formation + Delta-G solvation = -60.448267 kcal Electronic energy + Delta-G solvation = -23054.268320 eV Core-core repulsion = 19942.550361 eV Total energy + Delta-G solvation = -3111.717959 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.12469 -39.02548 -37.66289 -35.49884 -34.17335 -33.56234 -31.84468 -30.45214 -28.26341 -27.56212 -26.78247 -24.58709 -23.78304 -22.09796 -21.41159 -20.37991 -19.14511 -18.81923 -18.11268 -17.03865 -16.44431 -16.18739 -15.61850 -15.51419 -15.22568 -15.11288 -14.69725 -14.55095 -14.41981 -14.04054 -13.92301 -13.59920 -13.47956 -13.27896 -12.98794 -12.92420 -12.71716 -12.65253 -12.49151 -12.27955 -12.00216 -11.91121 -11.79157 -11.74202 -11.70552 -11.55857 -11.34901 -11.10616 -10.84534 -10.34107 -9.77067 -9.25300 -8.35649 -6.39829 0.48331 1.28728 1.33228 1.41813 2.28721 2.35553 2.50908 2.98899 3.68930 3.79062 3.90645 4.01878 4.08083 4.09528 4.18497 4.30499 4.36368 4.46120 4.52979 4.56166 4.66359 4.69805 4.74950 4.82199 4.85159 4.89038 4.96037 5.04168 5.05452 5.10338 5.11279 5.17396 5.21647 5.22429 5.28475 5.36266 5.44315 5.46591 5.47929 5.51364 5.63173 5.72585 5.77851 6.24987 6.60554 6.80115 7.21496 7.52465 8.81735 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.016124 B = 0.005510 C = 0.004586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.122129 B = 5080.422464 C = 6103.981570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.111 4.111 3 C -0.138 4.138 4 C 0.110 3.890 5 N -0.597 5.597 6 C 0.230 3.770 7 C -0.532 4.532 8 H 0.026 0.974 9 C 0.012 3.988 10 N -0.946 5.946 11 Si 0.948 3.052 12 H -0.277 1.277 13 H -0.272 1.272 14 H -0.241 1.241 15 C 0.531 3.469 16 O -0.591 6.591 17 C -0.234 4.234 18 C -0.025 4.025 19 C -0.112 4.112 20 C -0.110 4.110 21 C -0.120 4.120 22 C -0.111 4.111 23 C -0.087 4.087 24 H 0.070 0.930 25 H 0.068 0.932 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.071 0.929 29 H 0.026 0.974 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.095 0.905 33 H 0.045 0.955 34 H 0.014 0.986 35 H 0.268 0.732 36 H 0.154 0.846 37 H 0.061 0.939 38 H 0.070 0.930 39 H 0.061 0.939 40 H 0.065 0.935 41 H 0.079 0.921 42 H 0.062 0.938 43 H 0.067 0.933 44 H 0.087 0.913 45 H 0.091 0.909 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.028 21.716 -1.123 23.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.130 4.130 3 C -0.195 4.195 4 C -0.013 4.013 5 N -0.326 5.326 6 C 0.108 3.892 7 C -0.571 4.571 8 H 0.044 0.956 9 C -0.186 4.186 10 N -0.586 5.586 11 Si 0.770 3.230 12 H -0.203 1.203 13 H -0.197 1.197 14 H -0.164 1.164 15 C 0.324 3.676 16 O -0.475 6.475 17 C -0.254 4.254 18 C -0.027 4.027 19 C -0.149 4.149 20 C -0.147 4.147 21 C -0.158 4.158 22 C -0.149 4.149 23 C -0.124 4.124 24 H 0.089 0.911 25 H 0.087 0.913 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.090 0.910 29 H 0.045 0.955 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.113 0.887 33 H 0.062 0.938 34 H 0.032 0.968 35 H 0.077 0.923 36 H 0.171 0.829 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.098 0.902 42 H 0.080 0.920 43 H 0.086 0.914 44 H 0.106 0.894 45 H 0.109 0.891 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -9.363 21.475 -1.147 23.455 hybrid contribution 0.860 -1.232 -0.481 1.577 sum -8.504 20.243 -1.629 22.017 Atomic orbital electron populations 1.21714 0.92236 1.02302 1.03069 1.21507 0.97541 0.96734 0.97267 1.21845 0.99503 0.95348 1.02787 1.21893 0.78384 1.01503 0.99508 1.47901 1.07462 1.23792 1.53398 1.19209 0.93355 0.84377 0.92277 1.21550 1.36017 1.03293 0.96217 0.95579 1.25836 0.95099 0.95015 1.02671 1.70052 1.41535 1.09992 1.37026 0.85718 0.79550 0.78072 0.79612 1.20310 1.19698 1.16441 1.19202 0.86385 0.83739 0.78257 1.90639 1.16189 1.78279 1.62370 1.22499 1.01006 0.95361 1.06566 1.22942 0.95163 0.92950 0.91655 1.21307 0.93864 0.98020 1.01719 1.21635 1.01584 0.92654 0.98872 1.21560 0.96815 0.99620 0.97768 1.21577 0.96377 0.94831 1.02084 1.21034 1.02071 0.93968 0.95357 0.91059 0.91298 0.92650 0.92755 0.90979 0.95515 0.91418 0.91397 0.88690 0.93750 0.96828 0.92287 0.82917 0.92068 0.91212 0.92015 0.91590 0.90242 0.91961 0.91382 0.89398 0.89082 0.89392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.19 71.98 0.66 -1.81 16 2 C -0.11 -2.81 3.13 -10.80 -0.03 -2.84 16 3 C -0.14 -3.19 7.69 71.98 0.55 -2.64 16 4 C 0.11 3.50 4.88 86.38 0.42 3.92 16 5 N -0.60 -25.77 2.30 -830.43 -1.91 -27.68 16 6 C 0.23 11.83 4.20 85.63 0.36 12.19 16 7 C -0.53 -32.75 9.90 25.60 0.25 -32.49 16 8 H 0.03 1.79 8.06 -2.91 -0.02 1.77 16 9 C 0.01 0.71 5.47 84.65 0.46 1.17 16 10 N -0.95 -61.68 13.96 21.45 0.30 -61.38 16 11 Si 0.95 46.40 27.37 68.60 1.88 48.28 16 12 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 13 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 14 H -0.24 -10.70 6.69 99.48 0.67 -10.04 16 15 C 0.53 23.18 6.21 86.57 0.54 23.72 16 16 O -0.59 -31.21 13.16 -4.06 -0.05 -31.26 16 17 C -0.23 -7.35 6.78 23.43 0.16 -7.20 16 18 C -0.03 -0.70 5.34 -17.25 -0.09 -0.79 16 19 C -0.11 -3.47 5.17 30.25 0.16 -3.32 16 20 C -0.11 -2.45 5.95 30.80 0.18 -2.27 16 21 C -0.12 -1.97 5.81 30.57 0.18 -1.79 16 22 C -0.11 -1.60 5.94 30.66 0.18 -1.42 16 23 C -0.09 -1.61 6.04 30.11 0.18 -1.43 16 24 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.07 1.41 6.56 -2.38 -0.02 1.39 16 29 H 0.03 0.77 6.58 -2.39 -0.02 0.76 16 30 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.07 2.30 8.10 -2.39 -0.02 2.28 16 32 H 0.10 2.54 5.84 -2.38 -0.01 2.52 16 33 H 0.04 2.11 7.44 -2.39 -0.02 2.10 16 34 H 0.01 0.75 6.72 -2.39 -0.02 0.73 16 35 H 0.27 16.21 8.31 -92.71 -0.77 15.44 16 36 H 0.15 3.76 4.94 -2.91 -0.01 3.74 16 37 H 0.06 1.99 8.14 -2.38 -0.02 1.98 16 38 H 0.07 2.77 5.25 -2.39 -0.01 2.75 16 39 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 41 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 43 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.09 1.36 7.95 -2.38 -0.02 1.34 16 46 H 0.09 1.58 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -78.33 350.99 5.27 -73.06 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: 0.89 Total: 15.96 kcal Atomic # 6 Polarization: -21.15 SS G_CDS: 4.16 Total: -16.99 kcal Atomic # 7 Polarization: -87.44 SS G_CDS: -1.61 Total: -89.05 kcal Atomic # 8 Polarization: -31.21 SS G_CDS: -0.05 Total: -31.26 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 1.88 Total: 48.28 kcal Total: -78.33 5.27 -73.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751375146.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.617 kcal (2) G-P(sol) polarization free energy of solvation -78.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds